mRNA_L-elsbetiae_contig125.2029.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig125.2029.1
Unique NamemRNA_L-elsbetiae_contig125.2029.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig125.2029.1 vs. uniprot
Match: A0A6H5KEY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEY2_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 1.720e-22
Identity = 45/51 (88.24%), Postives = 49/51 (96.08%), Query Frame = 1 
Query:    1 KMADVMSSLMKHKHAGLFLSPVDPRTAPDYDKIVQTPMDLGTIDRKLRTGG 153
            +MADVMSSLMKHKHAGLFL+PVDPRTAP Y+K VQTPMDLGTI+RKLRTGG
Sbjct:   62 RMADVMSSLMKHKHAGLFLAPVDPRTAPGYEKYVQTPMDLGTINRKLRTGG 112
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BLAST of mRNA_L-elsbetiae_contig125.2029.1 vs. uniprot
Match: D8LBK0_ECTSI (Bromodomain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK0_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 4.380e-22
Identity = 44/51 (86.27%), Postives = 48/51 (94.12%), Query Frame = 1 
Query:    1 KMADVMSSLMKHKHAGLFLSPVDPRTAPDYDKIVQTPMDLGTIDRKLRTGG 153
            +MADVMSSLMKHKHAGLFL+PVDPRTAP Y+K VQTPMDLGTIDRKL+ GG
Sbjct:   47 RMADVMSSLMKHKHAGLFLAPVDPRTAPSYEKYVQTPMDLGTIDRKLQAGG 97
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BLAST of mRNA_L-elsbetiae_contig125.2029.1 vs. uniprot
Match: UPI00199EE4E6 (cat eye syndrome critical region protein 2 n=1 Tax=Silurus meridionalis TaxID=175797 RepID=UPI00199EE4E6)

HSP 1 Score: 57.8 bits (138), Expect = 2.140e-8
Identity = 27/46 (58.70%), Postives = 32/46 (69.57%), Query Frame = 1 
Query:   13 VMSSLMKHKHAGLFLSPVDPRTAPDYDKIVQTPMDLGTIDRKLRTG 150
            V+ SL  HK A  FL PVD   AP+Y +I+QTPMDL TI+RKL  G
Sbjct:  409 VLESLKAHKDAWPFLEPVDESYAPNYHEIIQTPMDLSTIERKLNEG 454
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BLAST of mRNA_L-elsbetiae_contig125.2029.1 vs. uniprot
Match: UPI001885C999 (cat eye syndrome critical region protein 2 isoform X1 n=5 Tax=Syngnathus acus TaxID=161584 RepID=UPI001885C999)

HSP 1 Score: 57.4 bits (137), Expect = 2.920e-8
Identity = 27/46 (58.70%), Postives = 31/46 (67.39%), Query Frame = 1 
Query:   13 VMSSLMKHKHAGLFLSPVDPRTAPDYDKIVQTPMDLGTIDRKLRTG 150
            V+ +L  HK A  FL PVD   AP+Y  I+QTPMDL TIDRKL  G
Sbjct:  414 VLEALKAHKDAWPFLEPVDDSYAPNYHDIIQTPMDLSTIDRKLNDG 459
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BLAST of mRNA_L-elsbetiae_contig125.2029.1 vs. uniprot
Match: UPI001B3AB84F (cat eye syndrome critical region protein 2 homolog n=1 Tax=Toxotes jaculatrix TaxID=941984 RepID=UPI001B3AB84F)

HSP 1 Score: 57.0 bits (136), Expect = 4.000e-8
Identity = 26/46 (56.52%), Postives = 32/46 (69.57%), Query Frame = 1 
Query:   13 VMSSLMKHKHAGLFLSPVDPRTAPDYDKIVQTPMDLGTIDRKLRTG 150
            V+ +L  HK A  FL PVD   AP+Y +I+QTPMDL TI+RKL  G
Sbjct:  418 VLEALKSHKDAWPFLEPVDDSYAPNYHEIIQTPMDLSTIERKLNDG 463
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BLAST of mRNA_L-elsbetiae_contig125.2029.1 vs. uniprot
Match: A0A4W6C0Y5_LATCA (Bromo domain-containing protein n=1 Tax=Lates calcarifer TaxID=8187 RepID=A0A4W6C0Y5_LATCA)

HSP 1 Score: 56.6 bits (135), Expect = 5.450e-8
Identity = 26/46 (56.52%), Postives = 32/46 (69.57%), Query Frame = 1 
Query:   13 VMSSLMKHKHAGLFLSPVDPRTAPDYDKIVQTPMDLGTIDRKLRTG 150
            V+ +L  HK A  FL PVD   AP+Y +I+QTPMDL TI+RKL  G
Sbjct:  363 VLEALKAHKDAWPFLEPVDDSYAPNYHEIIQTPMDLSTIERKLNDG 408
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BLAST of mRNA_L-elsbetiae_contig125.2029.1 vs. uniprot
Match: A0A4W6C0Y0_LATCA (Bromo domain-containing protein n=2 Tax=Lates calcarifer TaxID=8187 RepID=A0A4W6C0Y0_LATCA)

HSP 1 Score: 56.6 bits (135), Expect = 5.450e-8
Identity = 26/46 (56.52%), Postives = 32/46 (69.57%), Query Frame = 1 
Query:   13 VMSSLMKHKHAGLFLSPVDPRTAPDYDKIVQTPMDLGTIDRKLRTG 150
            V+ +L  HK A  FL PVD   AP+Y +I+QTPMDL TI+RKL  G
Sbjct:  418 VLEALKAHKDAWPFLEPVDDSYAPNYHEIIQTPMDLSTIERKLNDG 463
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BLAST of mRNA_L-elsbetiae_contig125.2029.1 vs. uniprot
Match: A0A672ZNM4_9TELE (Bromo domain-containing protein n=1 Tax=Sphaeramia orbicularis TaxID=375764 RepID=A0A672ZNM4_9TELE)

HSP 1 Score: 56.6 bits (135), Expect = 5.460e-8
Identity = 26/46 (56.52%), Postives = 32/46 (69.57%), Query Frame = 1 
Query:   13 VMSSLMKHKHAGLFLSPVDPRTAPDYDKIVQTPMDLGTIDRKLRTG 150
            V+ +L  HK A  FL PVD   AP+Y +I+QTPMDL TI+RKL  G
Sbjct:  384 VLEALKAHKDAWPFLEPVDDSYAPNYHEIIQTPMDLSTIERKLNDG 429
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BLAST of mRNA_L-elsbetiae_contig125.2029.1 vs. uniprot
Match: A0A3S2PPG4_ORYJA (Bromo domain-containing protein n=1 Tax=Oryzias javanicus TaxID=123683 RepID=A0A3S2PPG4_ORYJA)

HSP 1 Score: 56.6 bits (135), Expect = 5.460e-8
Identity = 26/46 (56.52%), Postives = 32/46 (69.57%), Query Frame = 1 
Query:   13 VMSSLMKHKHAGLFLSPVDPRTAPDYDKIVQTPMDLGTIDRKLRTG 150
            V+ +L  HK A  FL PVD   AP+Y +I+QTPMDL TI+RKL  G
Sbjct:  414 VLEALKAHKDAWPFLEPVDDSYAPNYHEIIQTPMDLSTIERKLNDG 459
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BLAST of mRNA_L-elsbetiae_contig125.2029.1 vs. uniprot
Match: W5L0Y7_ASTMX (Cat eye syndrome critical region protein 2 n=3 Tax=Astyanax mexicanus TaxID=7994 RepID=W5L0Y7_ASTMX)

HSP 1 Score: 56.6 bits (135), Expect = 5.460e-8
Identity = 25/46 (54.35%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:   13 VMSSLMKHKHAGLFLSPVDPRTAPDYDKIVQTPMDLGTIDRKLRTG 150
            V+ +L  HK A  FL PVD   AP+Y++I+QTPMDL TI++KL  G
Sbjct:  409 VLEALKSHKDAWPFLEPVDESYAPNYNEIIQTPMDLSTIEKKLNEG 454
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig125.2029.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KEY2_9PHAE1.720e-2288.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LBK0_ECTSI4.380e-2286.27Bromodomain-containing protein n=1 Tax=Ectocarpus ... [more]
UPI00199EE4E62.140e-858.70cat eye syndrome critical region protein 2 n=1 Tax... [more]
UPI001885C9992.920e-858.70cat eye syndrome critical region protein 2 isoform... [more]
UPI001B3AB84F4.000e-856.52cat eye syndrome critical region protein 2 homolog... [more]
A0A4W6C0Y5_LATCA5.450e-856.52Bromo domain-containing protein n=1 Tax=Lates calc... [more]
A0A4W6C0Y0_LATCA5.450e-856.52Bromo domain-containing protein n=2 Tax=Lates calc... [more]
A0A672ZNM4_9TELE5.460e-856.52Bromo domain-containing protein n=1 Tax=Sphaeramia... [more]
A0A3S2PPG4_ORYJA5.460e-856.52Bromo domain-containing protein n=1 Tax=Oryzias ja... [more]
W5L0Y7_ASTMX5.460e-854.35Cat eye syndrome critical region protein 2 n=3 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig125contigL-elsbetiae_contig125:145..300 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.9
Seed ortholog evalue5.8e-18
Seed eggNOG ortholog2880.D8LBK0
KEGG koko:K10608,ko:K11658,ko:K11756,ko:K12035
KEGG Pathwayko04120,ko05206,map04120,map05206
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.chromatin remodeling
EggNOG OGsCOG5076@1,KOG1245@2759,KOG1474@2759,KOG2177@1,KOG2177@2759
Ec32 ortholog descriptionBromodomain
Ec32 orthologEc-27_003670.2
EC2.3.2.27
COG Functional cat.BK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03019,ko03021,ko03036,ko04121
Exons1
Model size156
Cds size153
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815444.0459394-CDS-L-elsbetiae_contig125:144..2971622815444.0459394-CDS-L-elsbetiae_contig125:144..297Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig125 145..297 -
1691682900.730808-CDS-L-elsbetiae_contig125:144..2971691682900.730808-CDS-L-elsbetiae_contig125:144..297Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig125 145..297 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815444.0583398-UTR-L-elsbetiae_contig125:297..3001622815444.0583398-UTR-L-elsbetiae_contig125:297..300Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig125 298..300 -
1691682900.7412999-UTR-L-elsbetiae_contig125:297..3001691682900.7412999-UTR-L-elsbetiae_contig125:297..300Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig125 298..300 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig125.2029.1prot_L-elsbetiae_contig125.2029.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig125 145..297 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig125.2029.1

>prot_L-elsbetiae_contig125.2029.1 ID=prot_L-elsbetiae_contig125.2029.1|Name=mRNA_L-elsbetiae_contig125.2029.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=51bp
MADVMSSLMKHKHAGLFLSPVDPRTAPDYDKIVQTPMDLGTIDRKLRTGG
*
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mRNA from alignment at L-elsbetiae_contig125:145..300-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig125.2029.1 ID=mRNA_L-elsbetiae_contig125.2029.1|Name=mRNA_L-elsbetiae_contig125.2029.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=156bp|location=Sequence derived from alignment at L-elsbetiae_contig125:145..300- (Laminarionema elsbetiae ELsaHSoW15)
AAGATGGCCGACGTGATGTCCTCGCTAATGAAGCACAAGCACGCCGGCCT
CTTCCTCTCCCCCGTCGACCCCCGCACGGCCCCGGACTACGATAAAATCG
TGCAGACCCCGATGGACCTCGGGACGATCGACAGGAAGCTTAGGACGGGC
GGGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig125:145..300-

>mRNA_L-elsbetiae_contig125.2029.1 ID=mRNA_L-elsbetiae_contig125.2029.1|Name=mRNA_L-elsbetiae_contig125.2029.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=306bp|location=Sequence derived from alignment at L-elsbetiae_contig125:145..300- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCGACGTGATGTCCTCGCTAATGAAGCACAAGCACGCCGGCCTCTT
CCTCTCCCCCGTCGACCCCCGCACGGCCCCGGACTACGATAAAATCGTGC
AGACCCCGATGGACCTCGGGACGATCGACAGGAAGCTTAGGACGGGCGGG
TGAATGGCCGACGTGATGTCCTCGCTAATGAAGCACAAGCACGCCGGCCT
CTTCCTCTCCCCCGTCGACCCCCGCACGGCCCCGGACTACGATAAAATCG
TGCAGACCCCGATGGACCTCGGGACGATCGACAGGAAGCTTAGGACGGGC
GGGTGA
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