mRNA_L-elsbetiae_contig12494.2027.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12494.2027.1
Unique NamemRNA_L-elsbetiae_contig12494.2027.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig12494.2027.1 vs. uniprot
Match: D7FZ11_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ11_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 5.820e-17
Identity = 50/85 (58.82%), Postives = 62/85 (72.94%), Query Frame = 1 
Query:   22 EDEDALGGGRTVEMEEIQEERVQAVIRYRDGLVEVLRAMLAMHLNPRRDEDDDEQRDEAREGRGAG-----LSQDGIEGVPRVLT 261
            EDE+   G RT+E+EEI EE+VQ V+RYRD LVEVLRAMLAMHL PRR++++         GRGA      +++DGIEGVPRVLT
Sbjct:  370 EDEENTLGDRTLEVEEITEEKVQEVVRYRDDLVEVLRAMLAMHLYPRRNDEEXXXXXXXXXGRGAARGGGAVTEDGIEGVPRVLT 454
[Close]
BLAST of mRNA_L-elsbetiae_contig12494.2027.1 vs. uniprot
Match: A0A6H5J7R4_9PHAE (SCD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7R4_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 6.760e-13
Identity = 48/87 (55.17%), Postives = 57/87 (65.52%), Query Frame = 1 
Query:   19 EEDEDALGGGRTVEMEEIQEERVQAVIRYRDGLVEVLRAMLAMHLNPRRDEDDDEQRDEAREGRGA------GLSQDGIEGVPRVLT 261
            E++ED LG G T+E+EEI EE+VQ V+RYRD LVEVLRAMLAMHL PRRD                       +++DGIEGVPRVLT
Sbjct:  800 EDEEDTLGDG-TLEVEEITEEKVQEVVRYRDDLVEVLRAMLAMHLYPRRDXXXXXXXXXXXXXXXXXXXXXXAVAEDGIEGVPRVLT 885
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12494.2027.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FZ11_ECTSI5.820e-1758.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J7R4_9PHAE6.760e-1355.17SCD domain-containing protein n=1 Tax=Ectocarpus s... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12494contigL-elsbetiae_contig12494:3675..4692 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.5
Seed ortholog evalue1.4e-14
Seed eggNOG ortholog2880.D7FZ11
Preferred nameIRR1
KEGG koko:K06671
KEGG Pathwayko04110,ko04111,ko04113,map04110,map04111,map04113
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000070,GO:0000228,GO:0000278,GO:0000280,GO:0000785,GO:0000790,GO:0000793,GO:0000794,GO:0000798,GO:0000819,GO:0003674,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005829,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0007127,GO:0007129,GO:0007135,GO:0008150,GO:0008278,GO:0008608,GO:0009987,GO:0010789,GO:0016043,GO:0022402,GO:0022414,GO:0022607,GO:0030892,GO:0030893,GO:0030999,GO:0031619,GO:0031974,GO:0031981,GO:0032991,GO:0034990,GO:0034991,GO:0043060,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0045132,GO:0045143,GO:0045144,GO:0048285,GO:0050000,GO:0051177,GO:0051179,GO:0051234,GO:0051276,GO:0051303,GO:0051310,GO:0051311,GO:0051316,GO:0051321,GO:0051455,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0061982,GO:0061983,GO:0070013,GO:0070192,GO:0071840,GO:0098813,GO:0140013,GO:0140014,GO:1903046,GO:1903047
EggNOG free text desc.chromosome segregation
EggNOG OGsCOG5537@1,KOG2011@2759
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Exons3
Model size266
Cds size264
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12494.2027.1prot_L-elsbetiae_contig12494.2027.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12494 3675..4692 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815443.8757849-CDS-L-elsbetiae_contig12494:3674..37141622815443.8757849-CDS-L-elsbetiae_contig12494:3674..3714Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12494 3675..3714 +
1691682900.632369-CDS-L-elsbetiae_contig12494:3674..37141691682900.632369-CDS-L-elsbetiae_contig12494:3674..3714Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12494 3675..3714 +
1622815443.8856983-CDS-L-elsbetiae_contig12494:4216..42831622815443.8856983-CDS-L-elsbetiae_contig12494:4216..4283Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12494 4217..4283 +
1691682900.6427848-CDS-L-elsbetiae_contig12494:4216..42831691682900.6427848-CDS-L-elsbetiae_contig12494:4216..4283Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12494 4217..4283 +
1622815443.896286-CDS-L-elsbetiae_contig12494:4535..46921622815443.896286-CDS-L-elsbetiae_contig12494:4535..4692Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12494 4536..4692 +
1691682900.651018-CDS-L-elsbetiae_contig12494:4535..46921691682900.651018-CDS-L-elsbetiae_contig12494:4535..4692Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12494 4536..4692 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12494.2027.1

>prot_L-elsbetiae_contig12494.2027.1 ID=prot_L-elsbetiae_contig12494.2027.1|Name=mRNA_L-elsbetiae_contig12494.2027.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=88bp
SNEAGEEEDEDALGGGRTVEMEEIQEERVQAVIRYRDGLVEVLRAMLAMH
LNPRRDEDDDEQRDEAREGRGAGLSQDGIEGVPRVLTT
back to top

mRNA from alignment at L-elsbetiae_contig12494:3675..4692+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12494.2027.1 ID=mRNA_L-elsbetiae_contig12494.2027.1|Name=mRNA_L-elsbetiae_contig12494.2027.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1018bp|location=Sequence derived from alignment at L-elsbetiae_contig12494:3675..4692+ (Laminarionema elsbetiae ELsaHSoW15)
AGCAACGAGGCGGGCGAGGAGGAGGACGAGGATGCCCTCGGTGCGTCCCA
TCGTCGTCGTCGTCGTTGTCTTGGCTGGCTGCTCGTCTTTGAGTGGCGTC
ACGTGTCCCCGTCTCGATTGGCCTTTTGTCGTGGCATGTGGTGCCGCGTG
CACGAGTCCGAGTCAAATCGTGCGGGGGTCGTTTTTCGTTCTCCGGTTTC
GTCCGTGCTCTGTTGTTTTCGTGGAATTTAGCTGGCTTTTGACGCATGGA
CTCGGCCGGAAAACGCTTGGAAAACAGCTCTCTGTTGATTGCCGATTATT
TTCCTCTGAGACAGACGACCCCCTCTTCGGCGAGCACGTCGCGTTGACTT
CGTTCGTTTGATTGCTTGCACCCTTTTCCCGCATGCTGGAATTTTTGGTG
TGAGCGTTCGACACGCACTCGAGGAAGGCAACGAACGCAGCATCATCTCC
ATTCACTTAAGTCCATGTGTATCGAACACAAGCATTAAATGTTGGTTTTC
TCGTGTGTTGTGTTGTTTTCCCGTCGTGTCTCTTCCGTGCAGGCGGCGGG
CGTACCGTGGAAATGGAAGAGATCCAGGAGGAGAGGGTCCAAGCCGTCAT
CCGCTACCGGTAACGCTTTTCTCGAGGCCGCTCTCCAGTTGTTTCCATAT
GCTTGTTGCTGTTGTTGCGGTGCGGTGCTGTGCTGTTGGTGCTTACTGTT
TGTCATGCTGGCTAACCTGATCAATATGGCCCCCCTACTGGAGATCCCCT
GATGGAACCCCTGATGGACTCCTTGTCTCGTGTGCGGAACCACGTGGAAA
TTCGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCATGTGTTTT
TGTGCGAGCAGCGACGGTCTCGTGGAGGTCCTGCGCGCCATGCTGGCCAT
GCACCTCAACCCCAGGCGGGACGAGGACGATGACGAGCAACGGGATGAGG
CGAGAGAGGGAAGGGGCGCAGGGCTTTCGCAGGATGGCATCGAGGGTGTT
CCCAGGGTCCTGACAACG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig12494:3675..4692+

>mRNA_L-elsbetiae_contig12494.2027.1 ID=mRNA_L-elsbetiae_contig12494.2027.1|Name=mRNA_L-elsbetiae_contig12494.2027.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=528bp|location=Sequence derived from alignment at L-elsbetiae_contig12494:3675..4692+ (Laminarionema elsbetiae ELsaHSoW15)
AGCAACGAGGCGGGCGAGGAGGAGGACGAGGATGCCCTCGAGCAACGAGG
CGGGCGAGGAGGAGGACGAGGATGCCCTCGGCGGCGGGCGTACCGTGGAA
ATGGAAGAGATCCAGGAGGAGAGGGTCCAAGCCGTCATCCGCTACCGGCG
GCGGGCGTACCGTGGAAATGGAAGAGATCCAGGAGGAGAGGGTCCAAGCC
GTCATCCGCTACCGCGACGGTCTCGTGGAGGTCCTGCGCGCCATGCTGGC
CATGCACCTCAACCCCAGGCGGGACGAGGACGATGACGAGCAACGGGATG
AGGCGAGAGAGGGAAGGGGCGCAGGGCTTTCGCAGGATGGCATCGAGGGT
GTTCCCAGGGTCCTGACAACGCGACGGTCTCGTGGAGGTCCTGCGCGCCA
TGCTGGCCATGCACCTCAACCCCAGGCGGGACGAGGACGATGACGAGCAA
CGGGATGAGGCGAGAGAGGGAAGGGGCGCAGGGCTTTCGCAGGATGGCAT
CGAGGGTGTTCCCAGGGTCCTGACAACG
back to top