mRNA_L-elsbetiae_contig12481.2022.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12481.2022.1
Unique NamemRNA_L-elsbetiae_contig12481.2022.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig12481.2022.1 vs. uniprot
Match: D7G3Y0_ECTSI (Lysine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3Y0_ECTSI)

HSP 1 Score: 53.1 bits (126), Expect = 2.470e-5
Identity = 43/76 (56.58%), Postives = 49/76 (64.47%), Query Frame = 3 
Query:  207 MVVSSLPASYAFGLVAGGTA-------GRTATAHIARC-SSRLLAPSTRSGGGGGRSALVAFDRSRR-TAFGIVPA 407
            MVVSSLPASYAFGLVA G+        GR   A++ARC SSRL A  T    G G+S+   FDRSRR +AFGI  A
Sbjct:    1 MVVSSLPASYAFGLVAAGSGAVAAAVGGRAGAANLARCCSSRLSALPTH---GVGQSSPGGFDRSRRLSAFGIFAA 73
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12481.2022.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G3Y0_ECTSI2.470e-556.58Lysine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12481contigL-elsbetiae_contig12481:3737..4173 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size439
Cds size432
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815442.3825128-UTR-L-elsbetiae_contig12481:3736..37411622815442.3825128-UTR-L-elsbetiae_contig12481:3736..3741Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12481 3737..3741 +
1691682900.2722623-UTR-L-elsbetiae_contig12481:3736..37411691682900.2722623-UTR-L-elsbetiae_contig12481:3736..3741Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12481 3737..3741 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815442.3934717-CDS-L-elsbetiae_contig12481:3741..41731622815442.3934717-CDS-L-elsbetiae_contig12481:3741..4173Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12481 3742..4173 +
1691682900.2806942-CDS-L-elsbetiae_contig12481:3741..41731691682900.2806942-CDS-L-elsbetiae_contig12481:3741..4173Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12481 3742..4173 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12481.2022.1prot_L-elsbetiae_contig12481.2022.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12481 3742..4173 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12481.2022.1

>prot_L-elsbetiae_contig12481.2022.1 ID=prot_L-elsbetiae_contig12481.2022.1|Name=mRNA_L-elsbetiae_contig12481.2022.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=144bp
MHSRTQCHRTHSSSSRPSQPHRADTTTLRAVGTAAAIPGRCAPTASLASR
SRGGGAGGGIFRLGAAAMVVSSLPASYAFGLVAGGTAGRTATAHIARCSS
RLLAPSTRSGGGGGRSALVAFDRSRRTAFGIVPAAATAGGELWG
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mRNA from alignment at L-elsbetiae_contig12481:3737..4173+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12481.2022.1 ID=mRNA_L-elsbetiae_contig12481.2022.1|Name=mRNA_L-elsbetiae_contig12481.2022.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=437bp|location=Sequence derived from alignment at L-elsbetiae_contig12481:3737..4173+ (Laminarionema elsbetiae ELsaHSoW15)
AGGAAATGCACTCTCGCACGCAGTGCCACCGCACCCACAGCAGTAGCAGC
AGGCCATCGCAACCACACCGAGCGGACACCACCACCCTCCGTGCCGTGGG
TACCGCTGCGGCTATACCCGGGCGTTGTGCCCCTACCGCTTCCCTCGCTT
CTCGAAGTCGTGGGGGAGGAGCAGGAGGAGGGATTTTCCGTCTCGGGGCA
GCGGCGATGGTAGTGTCCTCGCTGCCGGCCTCCTACGCCTTCGGGCTGGT
CGCCGGCGGAACGGCTGGCCGCACCGCGACCGCACACATCGCGCGGTGCT
CCTCCAGGCTCTTGGCGCCGTCCACACGTAGCGGCGGTGGGGGCGGACGA
TCAGCCCTGGTGGCCTTCGACCGATCGCGAAGAACCGCGTTCGGCATCGT
GCCCGCTGCTGCGACCGCGGGCGGCGAGCTGTGGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12481:3737..4173+

>mRNA_L-elsbetiae_contig12481.2022.1 ID=mRNA_L-elsbetiae_contig12481.2022.1|Name=mRNA_L-elsbetiae_contig12481.2022.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=864bp|location=Sequence derived from alignment at L-elsbetiae_contig12481:3737..4173+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCACTCTCGCACGCAGTGCCACCGCACCCACAGCAGTAGCAGCAGGCC
ATCGCAACCACACCGAGCGGACACCACCACCCTCCGTGCCGTGGGTACCG
CTGCGGCTATACCCGGGCGTTGTGCCCCTACCGCTTCCCTCGCTTCTCGA
AGTCGTGGGGGAGGAGCAGGAGGAGGGATTTTCCGTCTCGGGGCAGCGGC
GATGGTAGTGTCCTCGCTGCCGGCCTCCTACGCCTTCGGGCTGGTCGCCG
GCGGAACGGCTGGCCGCACCGCGACCGCACACATCGCGCGGTGCTCCTCC
AGGCTCTTGGCGCCGTCCACACGTAGCGGCGGTGGGGGCGGACGATCAGC
CCTGGTGGCCTTCGACCGATCGCGAAGAACCGCGTTCGGCATCGTGCCCG
CTGCTGCGACCGCGGGCGGCGAGCTGTGGGGGATGCACTCTCGCACGCAG
TGCCACCGCACCCACAGCAGTAGCAGCAGGCCATCGCAACCACACCGAGC
GGACACCACCACCCTCCGTGCCGTGGGTACCGCTGCGGCTATACCCGGGC
GTTGTGCCCCTACCGCTTCCCTCGCTTCTCGAAGTCGTGGGGGAGGAGCA
GGAGGAGGGATTTTCCGTCTCGGGGCAGCGGCGATGGTAGTGTCCTCGCT
GCCGGCCTCCTACGCCTTCGGGCTGGTCGCCGGCGGAACGGCTGGCCGCA
CCGCGACCGCACACATCGCGCGGTGCTCCTCCAGGCTCTTGGCGCCGTCC
ACACGTAGCGGCGGTGGGGGCGGACGATCAGCCCTGGTGGCCTTCGACCG
ATCGCGAAGAACCGCGTTCGGCATCGTGCCCGCTGCTGCGACCGCGGGCG
GCGAGCTGTGGGGG
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