mRNA_L-elsbetiae_contig12475.2016.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12475.2016.1
Unique NamemRNA_L-elsbetiae_contig12475.2016.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig12475.2016.1 vs. uniprot
Match: A0A6H5JEL9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEL9_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 7.890e-8
Identity = 27/34 (79.41%), Postives = 31/34 (91.18%), Query Frame = 1 
Query:  163 MLSDYDTLTLGGGGRPLTPVGQESQTTYQVPVAA 264
            MLSD+DTLTLGG  RP+TPVG+ESQT YQ+PVAA
Sbjct: 1247 MLSDFDTLTLGGSERPVTPVGEESQTAYQIPVAA 1280
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BLAST of mRNA_L-elsbetiae_contig12475.2016.1 vs. uniprot
Match: D8LLR2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLR2_ECTSI)

HSP 1 Score: 57.8 bits (138), Expect = 1.230e-6
Identity = 25/32 (78.12%), Postives = 29/32 (90.62%), Query Frame = 1 
Query:  163 MLSDYDTLTLGGGGRPLTPVGQESQTTYQVPV 258
            MLSD+DTLTLGG  RP+TPVG+ESQTTYQ+P 
Sbjct: 1115 MLSDFDTLTLGGSERPVTPVGEESQTTYQLPA 1146
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12475.2016.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JEL9_9PHAE7.890e-879.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLR2_ECTSI1.230e-678.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12475contigL-elsbetiae_contig12475:3611..4111 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size501
Cds size474
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815441.896836-UTR-L-elsbetiae_contig12475:3610..36371622815441.896836-UTR-L-elsbetiae_contig12475:3610..3637Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12475 3611..3637 +
1691682899.9758835-UTR-L-elsbetiae_contig12475:3610..36371691682899.9758835-UTR-L-elsbetiae_contig12475:3610..3637Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12475 3611..3637 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815441.9090133-CDS-L-elsbetiae_contig12475:3637..41111622815441.9090133-CDS-L-elsbetiae_contig12475:3637..4111Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12475 3638..4111 +
1691682899.9842758-CDS-L-elsbetiae_contig12475:3637..41111691682899.9842758-CDS-L-elsbetiae_contig12475:3637..4111Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12475 3638..4111 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12475.2016.1prot_L-elsbetiae_contig12475.2016.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12475 3638..4111 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12475.2016.1

>prot_L-elsbetiae_contig12475.2016.1 ID=prot_L-elsbetiae_contig12475.2016.1|Name=mRNA_L-elsbetiae_contig12475.2016.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=158bp
MPPEKGRSAGGGGGSGGGGRRKDEAPAKRPSLNDGDDKGKGQGQVMLSDY
DTLTLGGGGRPLTPVGQESQTTYQVPVAAGGGKNAPASLRRERTDPPPLP
PRRDNEGSPTYAGAVDGEDLQQQQQQQEPPVSGGAVAAGGGVAPPPLPPR
LSGRDVSG
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mRNA from alignment at L-elsbetiae_contig12475:3611..4111+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12475.2016.1 ID=mRNA_L-elsbetiae_contig12475.2016.1|Name=mRNA_L-elsbetiae_contig12475.2016.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=501bp|location=Sequence derived from alignment at L-elsbetiae_contig12475:3611..4111+ (Laminarionema elsbetiae ELsaHSoW15)
GGGGACCATACGTTGCCCCCTCCGAAAATGCCGCCAGAGAAGGGCAGGAG
TGCCGGTGGCGGCGGCGGCAGTGGCGGGGGGGGCAGGAGGAAGGACGAAG
CTCCGGCGAAGCGTCCGAGCTTGAACGACGGAGACGACAAGGGCAAGGGT
CAGGGGCAGGTCATGCTCAGCGACTACGACACCCTCACGCTCGGAGGCGG
CGGCCGCCCCCTGACCCCCGTCGGACAAGAGAGCCAGACCACCTACCAGG
TTCCGGTTGCGGCCGGAGGAGGCAAGAATGCTCCTGCTTCGCTTCGCAGG
GAGAGGACGGACCCGCCGCCGCTTCCGCCGCGCCGCGACAACGAGGGCAG
CCCGACTTACGCCGGCGCCGTCGACGGCGAAGACTTGCAGCAGCAGCAGC
AGCAGCAGGAGCCGCCTGTGTCCGGTGGCGCGGTCGCAGCTGGGGGAGGG
GTCGCTCCCCCCCCGCTCCCCCCCAGGCTTAGTGGGCGTGATGTGTCCGG
G
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12475:3611..4111+

>mRNA_L-elsbetiae_contig12475.2016.1 ID=mRNA_L-elsbetiae_contig12475.2016.1|Name=mRNA_L-elsbetiae_contig12475.2016.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=948bp|location=Sequence derived from alignment at L-elsbetiae_contig12475:3611..4111+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCGCCAGAGAAGGGCAGGAGTGCCGGTGGCGGCGGCGGCAGTGGCGG
GGGGGGCAGGAGGAAGGACGAAGCTCCGGCGAAGCGTCCGAGCTTGAACG
ACGGAGACGACAAGGGCAAGGGTCAGGGGCAGGTCATGCTCAGCGACTAC
GACACCCTCACGCTCGGAGGCGGCGGCCGCCCCCTGACCCCCGTCGGACA
AGAGAGCCAGACCACCTACCAGGTTCCGGTTGCGGCCGGAGGAGGCAAGA
ATGCTCCTGCTTCGCTTCGCAGGGAGAGGACGGACCCGCCGCCGCTTCCG
CCGCGCCGCGACAACGAGGGCAGCCCGACTTACGCCGGCGCCGTCGACGG
CGAAGACTTGCAGCAGCAGCAGCAGCAGCAGGAGCCGCCTGTGTCCGGTG
GCGCGGTCGCAGCTGGGGGAGGGGTCGCTCCCCCCCCGCTCCCCCCCAGG
CTTAGTGGGCGTGATGTGTCCGGGATGCCGCCAGAGAAGGGCAGGAGTGC
CGGTGGCGGCGGCGGCAGTGGCGGGGGGGGCAGGAGGAAGGACGAAGCTC
CGGCGAAGCGTCCGAGCTTGAACGACGGAGACGACAAGGGCAAGGGTCAG
GGGCAGGTCATGCTCAGCGACTACGACACCCTCACGCTCGGAGGCGGCGG
CCGCCCCCTGACCCCCGTCGGACAAGAGAGCCAGACCACCTACCAGGTTC
CGGTTGCGGCCGGAGGAGGCAAGAATGCTCCTGCTTCGCTTCGCAGGGAG
AGGACGGACCCGCCGCCGCTTCCGCCGCGCCGCGACAACGAGGGCAGCCC
GACTTACGCCGGCGCCGTCGACGGCGAAGACTTGCAGCAGCAGCAGCAGC
AGCAGGAGCCGCCTGTGTCCGGTGGCGCGGTCGCAGCTGGGGGAGGGGTC
GCTCCCCCCCCGCTCCCCCCCAGGCTTAGTGGGCGTGATGTGTCCGGG
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