mRNA_L-elsbetiae_contig12475.2015.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12475.2015.1
Unique NamemRNA_L-elsbetiae_contig12475.2015.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig12475.2015.1 vs. uniprot
Match: D8LLR2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLR2_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 4.980e-13
Identity = 54/96 (56.25%), Postives = 65/96 (67.71%), Query Frame = 1 
Query:   10 KDLRLEVKED-----------FSTWQGPNSRAPSSGQARDGSFGVRRRRRQSDGESKG----WTSDSTSADVGXXXXXXXXXXVTSFPSHPSPLSG 252
            K+LRLEVK D           + +WQGP+SRAPSSGQA+DG+FGVRR+  QS+GE       W +DS+ A     XXXXXXXX  SFPSHPSPL+G
Sbjct:  911 KNLRLEVKGDGDGDDGSEWGNYYSWQGPDSRAPSSGQAKDGTFGVRRQSNQSEGEGGRNLGPWATDSSGAPX---XXXXXXXXQASFPSHPSPLAG 1003
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BLAST of mRNA_L-elsbetiae_contig12475.2015.1 vs. uniprot
Match: A0A6H5JEL9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEL9_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 8.250e-12
Identity = 44/95 (46.32%), Postives = 56/95 (58.95%), Query Frame = 1 
Query:   13 DLRLEVKE-----------DFSTWQGPNSRAPSSGQARDGSFGVRRRRRQSDGESK----GWTSDSTSADVGXXXXXXXXXXVTSFPSHPSPLSG 252
            +LRLEVK            ++ +WQGP+SRAPSSGQA+DG+FGVRR+  QS+ E       W +DS+ A  G            SFPSHPSPL+G
Sbjct: 1047 NLRLEVKGHGDGDDGSEWGNYYSWQGPDSRAPSSGQAKDGTFGVRRQSNQSEEEGGKHLGAWATDSSGAPTGGGGAGGQ----ASFPSHPSPLAG 1137
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12475.2015.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LLR2_ECTSI4.980e-1356.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JEL9_9PHAE8.250e-1246.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12475contigL-elsbetiae_contig12475:2486..3515 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score74.3
Seed ortholog evalue3.1e-11
Seed eggNOG ortholog2880.D8LLR2
Preferred nameATMRK1
KEGG koko:K04424,ko:K16799
KEGG Pathwayko04010,ko04341,map04010,map04341
KEGG ModuleM00678
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0004485,GO:0004672,GO:0004674,GO:0004712,GO:0004713,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005886,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0007275,GO:0008150,GO:0008152,GO:0009791,GO:0009987,GO:0010154,GO:0010344,GO:0016020,GO:0016301,GO:0016310,GO:0016421,GO:0016740,GO:0016772,GO:0016773,GO:0016874,GO:0016885,GO:0018108,GO:0018193,GO:0018212,GO:0019538,GO:0022414,GO:0023052,GO:0031974,GO:0032501,GO:0032502,GO:0035556,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0061458,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0071944,GO:0140096,GO:1901564
EggNOG free text desc.clathrin-coated pit assembly
EggNOG OGsCOG0515@1,KOG0192@2759,KOG1989@1,KOG1989@2759
EC2.7.11.25
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko03000
Exons2
Model size265
Cds size264
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815441.9477208-CDS-L-elsbetiae_contig12475:2485..25121622815441.9477208-CDS-L-elsbetiae_contig12475:2485..2512Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12475 2486..2512 +
1691682899.9932346-CDS-L-elsbetiae_contig12475:2485..25121691682899.9932346-CDS-L-elsbetiae_contig12475:2485..2512Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12475 2486..2512 +
1622815441.959625-CDS-L-elsbetiae_contig12475:3277..35141622815441.959625-CDS-L-elsbetiae_contig12475:3277..3514Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12475 3278..3514 +
1691682900.0042539-CDS-L-elsbetiae_contig12475:3277..35141691682900.0042539-CDS-L-elsbetiae_contig12475:3277..3514Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12475 3278..3514 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12475.2015.1prot_L-elsbetiae_contig12475.2015.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12475 2486..3514 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12475.2015.1

>prot_L-elsbetiae_contig12475.2015.1 ID=prot_L-elsbetiae_contig12475.2015.1|Name=mRNA_L-elsbetiae_contig12475.2015.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=88bp
GSTKDLRLEVKEDFSTWQGPNSRAPSSGQARDGSFGVRRRRRQSDGESKG
WTSDSTSADVGGGGGGGGGGGVTSFPSHPSPLSGGEGG
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mRNA from alignment at L-elsbetiae_contig12475:2486..3515+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12475.2015.1 ID=mRNA_L-elsbetiae_contig12475.2015.1|Name=mRNA_L-elsbetiae_contig12475.2015.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1030bp|location=Sequence derived from alignment at L-elsbetiae_contig12475:2486..3515+ (Laminarionema elsbetiae ELsaHSoW15)
GGGAGCACCAAGGACCTGCGCCTCGAGGTTAGTGTGTCCCTGTTTCCCCC
CGTGTCTTGTGTTTACGGCAGGGGGGGGGGGGGGGGGGGGTTCTAACCAT
CCTACCAACCTTAATCTTCCCACATACATGCCACCGCGGAACTCGAGATG
ATACTGACAAGGAAGAGATACTTTCCAGTGGAGGGGGGGGTTCTAACCAT
CCTACCAACCTTAATCTTCCCACATACATGCCACCGCGGAACTCGAGATG
ATACTGACAAGGAAGAGATACTTTCCAGTGGAGGGGGGGGGGGGGCAGTT
TGCAGGCATCCGGGTTGCCGAGACTGCTGTCGCTGCTGCTTGCTGCTGCT
GCGTCGGCTGCTTGGGCGACTGTGTATGCCTAAACACCTTTGACAACAGT
GGTGGTGGAACCCCTGCCCCCTCGCCGGAGATTTGCTTCACGCGTTCCCG
TGGTTGAATTACGGTGTCAGATGTCTGTCAGATGCCCCCGAGTTTCGTGG
ACGATCTTGCTGAACCGACATGTTGGGCCCGGCCCGTCCCGGCGTTCGAA
GAGACGCGGGGGGTATTTTTCATGTATTTTACGGCTACACACAGGTGGCC
ATACTGACGGCTACACACAGGTGGCCGTGTGCAGTACTGATTGCCTGCTT
GCGTTCTCACCTGTATCGTGATATCTCGGCCGTCCCACGATGTCGGCTCA
CAGCAGTAGTGGTGCCTTTGTGCTGTCATGTTCCGTGTACCTCATCCATC
CTGTAAACAACTGAACTGCCGAACGGAACTAAAATAATAAAGGTGAAAGA
GGACTTCTCCACGTGGCAGGGACCCAACAGCCGCGCCCCATCCTCGGGGC
AGGCACGAGACGGCTCCTTCGGGGTGCGGCGACGGCGGCGCCAGTCCGAC
GGGGAGAGCAAAGGGTGGACATCCGACTCCACCAGCGCCGATGTCGGCGG
CGGTGGCGGCGGCGGCGGAGGTGGCGGGGTGACCTCCTTCCCAAGCCATC
CTAGCCCCTTGTCTGGCGGCGAGGGCGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12475:2486..3515+

>mRNA_L-elsbetiae_contig12475.2015.1 ID=mRNA_L-elsbetiae_contig12475.2015.1|Name=mRNA_L-elsbetiae_contig12475.2015.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=528bp|location=Sequence derived from alignment at L-elsbetiae_contig12475:2486..3515+ (Laminarionema elsbetiae ELsaHSoW15)
GGGAGCACCAAGGACCTGCGCCTCGAGGGGAGCACCAAGGACCTGCGCCT
CGAGGTGAAAGAGGACTTCTCCACGTGGCAGGGACCCAACAGCCGCGCCC
CATCCTCGGGGCAGGCACGAGACGGCTCCTTCGGGGTGCGGCGACGGCGG
CGCCAGTCCGACGGGGAGAGCAAAGGGTGGACATCCGACTCCACCAGCGC
CGATGTCGGCGGCGGTGGCGGCGGCGGCGGAGGTGGCGGGGTGACCTCCT
TCCCAAGCCATCCTAGCCCCTTGTCTGGCGGCGAGGGCGGGGTGAAAGAG
GACTTCTCCACGTGGCAGGGACCCAACAGCCGCGCCCCATCCTCGGGGCA
GGCACGAGACGGCTCCTTCGGGGTGCGGCGACGGCGGCGCCAGTCCGACG
GGGAGAGCAAAGGGTGGACATCCGACTCCACCAGCGCCGATGTCGGCGGC
GGTGGCGGCGGCGGCGGAGGTGGCGGGGTGACCTCCTTCCCAAGCCATCC
TAGCCCCTTGTCTGGCGGCGAGGGCGGG
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