mRNA_L-elsbetiae_contig12442.1991.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12442.1991.1
Unique NamemRNA_L-elsbetiae_contig12442.1991.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12442.1991.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12442contigL-elsbetiae_contig12442:1423..2824 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1404
Cds size852
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815439.7726984-CDS-L-elsbetiae_contig12442:1422..22741622815439.7726984-CDS-L-elsbetiae_contig12442:1422..2274Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12442 1423..2274 +
1691682898.7571585-CDS-L-elsbetiae_contig12442:1422..22741691682898.7571585-CDS-L-elsbetiae_contig12442:1422..2274Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12442 1423..2274 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815439.7824805-UTR-L-elsbetiae_contig12442:2274..28241622815439.7824805-UTR-L-elsbetiae_contig12442:2274..2824Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12442 2275..2824 +
1691682898.7670228-UTR-L-elsbetiae_contig12442:2274..28241691682898.7670228-UTR-L-elsbetiae_contig12442:2274..2824Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12442 2275..2824 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12442.1991.1prot_L-elsbetiae_contig12442.1991.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12442 1423..2274 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12442.1991.1

>prot_L-elsbetiae_contig12442.1991.1 ID=prot_L-elsbetiae_contig12442.1991.1|Name=mRNA_L-elsbetiae_contig12442.1991.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=284bp
QQEQQLQASPHPARESPSPRPSFSGASSPRLPLGGAARARTSSDGGGGGG
GGGGRSKGGADSVESFESGRGGLSPRRASSSSLSRVRDGGGGAQAGRENL
RTTIGGSGSAARLAKAAAAAAAAVDSAAAAVEQATSGASGSRLPRKPSSG
IPRKLSGTAAAAGASRLTAPASSASSASSRFADRSASIGSSSGGGGGSGG
GGTGGRSISSAGAALRTVQVAADLDAGEDNNSGTGSAGSLPAGTPNKSSG
EGAAAGAGGRRGFIPRPSPKTGRSLIPRRSGRA*
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mRNA from alignment at L-elsbetiae_contig12442:1423..2824+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12442.1991.1 ID=mRNA_L-elsbetiae_contig12442.1991.1|Name=mRNA_L-elsbetiae_contig12442.1991.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1402bp|location=Sequence derived from alignment at L-elsbetiae_contig12442:1423..2824+ (Laminarionema elsbetiae ELsaHSoW15)
CAGCAGGAGCAGCAGCTGCAGGCGTCGCCGCACCCCGCCAGAGAGTCGCC
GTCCCCGCGGCCTTCTTTTTCGGGCGCAAGCTCTCCTCGACTTCCTCTCG
GCGGCGCCGCGCGAGCCCGAACGTCGAGCGATGGCGGCGGCGGCGGCGGC
GGCGGCGGCGGTCGAAGCAAAGGTGGAGCAGACAGCGTTGAAAGCTTCGA
GAGCGGGAGAGGCGGCCTGTCCCCGCGGAGGGCCTCGTCGTCTAGCCTCT
CCCGCGTTCGCGACGGGGGCGGGGGGGCGCAAGCGGGGCGGGAGAACCTG
CGCACCACGATCGGCGGCAGCGGGTCTGCCGCGAGGCTTGCGAAGGCCGC
AGCTGCTGCGGCGGCGGCGGTGGACTCCGCGGCTGCGGCTGTGGAACAGG
CCACATCGGGTGCGTCGGGGAGCCGGCTGCCGCGGAAGCCGTCGTCTGGA
ATCCCCCGGAAGCTGTCCGGCACCGCCGCGGCGGCCGGTGCTTCGCGCCT
GACGGCGCCGGCGTCCTCGGCGTCCTCGGCGTCCTCGAGGTTTGCGGACA
GAAGCGCTTCCATCGGCAGCAGCAGCGGCGGCGGCGGCGGCAGCGGCGGC
GGCGGCACCGGAGGCAGGTCGATCTCTAGCGCGGGCGCTGCGCTGAGGAC
CGTGCAAGTGGCGGCGGACTTGGACGCAGGAGAGGACAACAATAGTGGAA
CGGGCTCGGCGGGATCCTTGCCTGCCGGCACGCCGAACAAGTCATCGGGA
GAAGGGGCGGCGGCCGGGGCCGGCGGCAGGCGAGGCTTCATCCCTCGCCC
GTCTCCGAAGACAGGAAGGAGCTTGATACCTCGCCGCAGCGGGCGGGCGT
GATTGCTTTTAGAGAGCTTGTCCGCGTATACGCGCACAGACTAGCGCGAA
GCATAACTAGGGCCGCGAGGGGCTCTAACGAACTCTAGAAAGAGGGGCAG
GCGGGCGAACACGGCTCCCGGCAGAGACTCGTCCAAGTGCAGTATACCAT
GGCGGTACTGCTGTGTGCTTCTTGGCATTTTTGTACACAAGCGTGTATGT
GTGTGTGTCGCATGTTCCGCTTGCAGTATACCATAGCTAAAGCGCCTTTT
TTATTTGTCCGAAGGATCGGATGACCCCCGTTGTGATTCCGCTTGGTAGG
GAGGTGATTGTAATATATACTGAACACTAATCTATGTATGTAGTCTAGAT
ATGTAGACTTCACATTAGAGAAAGACGAAGAGATCAATGCCGATCAACCG
GACGGCGGTCGAAGTGGCCGGGCCTACAAGCTCGTTCGTTTTCTCCGATC
CTGCTCATCGCGTGGACGGCAAGCACGTCCTCCGGGTTGGCACCCGCAAG
TTTCTCGCCTGTTTCTTCGACGTTCAAATATATAGATGTGCAGTCCGTGG
AG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12442:1423..2824+

>mRNA_L-elsbetiae_contig12442.1991.1 ID=mRNA_L-elsbetiae_contig12442.1991.1|Name=mRNA_L-elsbetiae_contig12442.1991.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1704bp|location=Sequence derived from alignment at L-elsbetiae_contig12442:1423..2824+ (Laminarionema elsbetiae ELsaHSoW15)
CAGCAGGAGCAGCAGCTGCAGGCGTCGCCGCACCCCGCCAGAGAGTCGCC
GTCCCCGCGGCCTTCTTTTTCGGGCGCAAGCTCTCCTCGACTTCCTCTCG
GCGGCGCCGCGCGAGCCCGAACGTCGAGCGATGGCGGCGGCGGCGGCGGC
GGCGGCGGCGGTCGAAGCAAAGGTGGAGCAGACAGCGTTGAAAGCTTCGA
GAGCGGGAGAGGCGGCCTGTCCCCGCGGAGGGCCTCGTCGTCTAGCCTCT
CCCGCGTTCGCGACGGGGGCGGGGGGGCGCAAGCGGGGCGGGAGAACCTG
CGCACCACGATCGGCGGCAGCGGGTCTGCCGCGAGGCTTGCGAAGGCCGC
AGCTGCTGCGGCGGCGGCGGTGGACTCCGCGGCTGCGGCTGTGGAACAGG
CCACATCGGGTGCGTCGGGGAGCCGGCTGCCGCGGAAGCCGTCGTCTGGA
ATCCCCCGGAAGCTGTCCGGCACCGCCGCGGCGGCCGGTGCTTCGCGCCT
GACGGCGCCGGCGTCCTCGGCGTCCTCGGCGTCCTCGAGGTTTGCGGACA
GAAGCGCTTCCATCGGCAGCAGCAGCGGCGGCGGCGGCGGCAGCGGCGGC
GGCGGCACCGGAGGCAGGTCGATCTCTAGCGCGGGCGCTGCGCTGAGGAC
CGTGCAAGTGGCGGCGGACTTGGACGCAGGAGAGGACAACAATAGTGGAA
CGGGCTCGGCGGGATCCTTGCCTGCCGGCACGCCGAACAAGTCATCGGGA
GAAGGGGCGGCGGCCGGGGCCGGCGGCAGGCGAGGCTTCATCCCTCGCCC
GTCTCCGAAGACAGGAAGGAGCTTGATACCTCGCCGCAGCGGGCGGGCGT
GACAGCAGGAGCAGCAGCTGCAGGCGTCGCCGCACCCCGCCAGAGAGTCG
CCGTCCCCGCGGCCTTCTTTTTCGGGCGCAAGCTCTCCTCGACTTCCTCT
CGGCGGCGCCGCGCGAGCCCGAACGTCGAGCGATGGCGGCGGCGGCGGCG
GCGGCGGCGGCGGTCGAAGCAAAGGTGGAGCAGACAGCGTTGAAAGCTTC
GAGAGCGGGAGAGGCGGCCTGTCCCCGCGGAGGGCCTCGTCGTCTAGCCT
CTCCCGCGTTCGCGACGGGGGCGGGGGGGCGCAAGCGGGGCGGGAGAACC
TGCGCACCACGATCGGCGGCAGCGGGTCTGCCGCGAGGCTTGCGAAGGCC
GCAGCTGCTGCGGCGGCGGCGGTGGACTCCGCGGCTGCGGCTGTGGAACA
GGCCACATCGGGTGCGTCGGGGAGCCGGCTGCCGCGGAAGCCGTCGTCTG
GAATCCCCCGGAAGCTGTCCGGCACCGCCGCGGCGGCCGGTGCTTCGCGC
CTGACGGCGCCGGCGTCCTCGGCGTCCTCGGCGTCCTCGAGGTTTGCGGA
CAGAAGCGCTTCCATCGGCAGCAGCAGCGGCGGCGGCGGCGGCAGCGGCG
GCGGCGGCACCGGAGGCAGGTCGATCTCTAGCGCGGGCGCTGCGCTGAGG
ACCGTGCAAGTGGCGGCGGACTTGGACGCAGGAGAGGACAACAATAGTGG
AACGGGCTCGGCGGGATCCTTGCCTGCCGGCACGCCGAACAAGTCATCGG
GAGAAGGGGCGGCGGCCGGGGCCGGCGGCAGGCGAGGCTTCATCCCTCGC
CCGTCTCCGAAGACAGGAAGGAGCTTGATACCTCGCCGCAGCGGGCGGGC
GTGA
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