mRNA_L-elsbetiae_contig1243.1982.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1243.1982.1
Unique NamemRNA_L-elsbetiae_contig1243.1982.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1243.1982.1 vs. uniprot
Match: D7FWS8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWS8_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 1.060e-11
Identity = 43/84 (51.19%), Postives = 55/84 (65.48%), Query Frame = 3 
Query:  261 KFINADKRRRAARKKIALEANKRARAEKGRPKRAAKMATLVRLLDAAVQAEPWNVLLHDR--KKGEACGRTAGSRIPEGRRRHP 506
            + I ADKRRRAARK   LEA+++ARAE  RP+R  KMA L+RLLDA ++ EPWN+  H +  +  E CGR     + EG R  P
Sbjct:   16 RVIEADKRRRAARKAKGLEASRKARAEMRRPRRDEKMALLLRLLDAVLEVEPWNLARHTKVSEAWEECGRRVPGYLKEGARTEP 99
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1243.1982.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FWS8_ECTSI1.060e-1151.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1243contigL-elsbetiae_contig1243:16..2193 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1317
Cds size318
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1243.1982.1prot_L-elsbetiae_contig1243.1982.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1243 794..1972 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815437.3370795-UTR-L-elsbetiae_contig1243:15..7931622815437.3370795-UTR-L-elsbetiae_contig1243:15..793Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1243 16..793 -
1691682898.0223796-UTR-L-elsbetiae_contig1243:15..7931691682898.0223796-UTR-L-elsbetiae_contig1243:15..793Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1243 16..793 -
1622815437.3664346-UTR-L-elsbetiae_contig1243:1972..21931622815437.3664346-UTR-L-elsbetiae_contig1243:1972..2193Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1243 1973..2193 -
1691682898.0581763-UTR-L-elsbetiae_contig1243:1972..21931691682898.0581763-UTR-L-elsbetiae_contig1243:1972..2193Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1243 1973..2193 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815437.3475745-CDS-L-elsbetiae_contig1243:793..9341622815437.3475745-CDS-L-elsbetiae_contig1243:793..934Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1243 794..934 -
1691682898.033211-CDS-L-elsbetiae_contig1243:793..9341691682898.033211-CDS-L-elsbetiae_contig1243:793..934Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1243 794..934 -
1622815437.3571112-CDS-L-elsbetiae_contig1243:1795..19721622815437.3571112-CDS-L-elsbetiae_contig1243:1795..1972Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1243 1796..1972 -
1691682898.0460465-CDS-L-elsbetiae_contig1243:1795..19721691682898.0460465-CDS-L-elsbetiae_contig1243:1795..1972Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1243 1796..1972 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1243.1982.1

>prot_L-elsbetiae_contig1243.1982.1 ID=prot_L-elsbetiae_contig1243.1982.1|Name=mRNA_L-elsbetiae_contig1243.1982.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=106bp
MLDVQCKRYLDKAKFINADKRRRAARKKIALEANKRARAEKGRPKRAAKM
ATLVRLLDAAVQAEPWNVLLHDRKKGEACGRTAGSRIPEGRRRHPARWCG
GWPFV*
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mRNA from alignment at L-elsbetiae_contig1243:16..2193-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1243.1982.1 ID=mRNA_L-elsbetiae_contig1243.1982.1|Name=mRNA_L-elsbetiae_contig1243.1982.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2178bp|location=Sequence derived from alignment at L-elsbetiae_contig1243:16..2193- (Laminarionema elsbetiae ELsaHSoW15)
GATTGTCTCGGACCTATAGGTATGACTATAATATTCCTTTCAGTCATAAC
CATAGCCTCGGACAGGCCACACCGCGGACTCACACAACTCGCCGCTCCCA
GTCTCTCTCCGCGATTGCTCGAGTATCCCTCTACGCGTCTGGCGCATCGA
CTTCTCTCATGAGGATCAAATGAGGATGCGGAGGTGTGGAGTACAACTGC
CGTGACCATGCCGAGGACGGGATGCTGGACGTGCAGTGCAAGAGGTATCT
CGATAAAGCAAAGTTCATCAATGCCGATAAGAGGCGCCGCGCTGCTAGGA
AGAAGATTGCCTTAGAAGCCAACAAGCGAGCCCGGGCCGAGAAAGGCCGC
CCGAAGCGTGCTGCGAAGATGGCTACACTTGTGAGGCTTCTCGATGCGGT
GAGTTTAGATAGATGAAGTACAACTTAGATACAGCCCTGAGCACGCGCCC
CCGCTGCACACACCATAGACATTTTATGAATAGTCTCAGGGCAACAGAGG
AAGGAAGACGAGACGAGCCACCACACTCGTTCACAGGGGCATGGCTTCTC
GGCTTTGGTGGGTCGGGAGGCCGTGGCGGTACCAACGATGTCACAACAGC
AGTTGCCACCGGTGTGTGGCTCACCCCATTGCATAGTTTCAGAGACGCGC
AAAACGGCGCGAAGGCAAAGAAATATACCAGAGGACAACATATGTAGATA
TGTGACGAAGCAAGATCAGTGTCCAGGTCCGAAGGCAAAGAAATATACCA
GAGAACAACATATGTAGATATATGTTACAAAGCAAGAGCAGTGTCCCAGG
TCCGAGCAACACGCAGACAAGCTGATTGTATCTCGCTGCAGGACCAAGTG
GTTATATGTACTCTACATACCATGTTGCTGCAGTCGTTATGTACAGAAGA
AGCCAGCAGATCGTCAATCGAAGAGGAGGGTCATTTTTGACGGTCGAATT
CAAGTTTGGAGGGGTGCTGGTACGCGATCGGAGGAGCATTTGGCCGATAT
TTAGAGCCTTTCCCCCCCCTCCTGGGATGAAGGGAAAACATGATCGCGGC
TTCGACGCTCTGCGGTTCATGATGAGAGGGGCATGGTGAATGAATGCATG
AGGCGGTAAATGCAAGGAAGGACTAGATAAACCAGCCGGTGGCCGGTGGT
TCGGTGTAGCCCCGAGAGGGGGGACTCCGATGCTCTGACACATAAATCCC
TTCAAGTCGACCGAAGATTTTAAACTCCCACGTCACTCGCATACCCCCTG
CCCAAGCAGGCAGTGCAAGCCGAACCATGGAACGTGTTACTCCACGACAG
GAAAAAGGGCGAGGCATGCGGGCGGACGGCGGGTTCTCGAATACCTGAAG
GAAGGCGGAGGCACCCGGCTAGATGGTGCGGAGGGTGGCCGTTCGTGTGA
GGCACCAGCTTGACGACCCGACGGCTAGGGTCTTGCGGAAATCAAGCACA
TACGTCACGCGGAGGGTGGAGGAAGATATAACCAAGCTGGCTGCCACGCA
GATTTACAAGGACAAATTCAGGCTGGGCCAGCAGCAAGGGCCAGTGGAGC
CCAAGAACGTGGATGTCAGTCTCTTTCTTACCCGTGTTCTCTAGCGCAAG
CTTTTCCGAAAGGCTTAAGGAGTTGGGGGCGGGGGCAATGTGGGCAAGCG
CGTGGACCCGTTCCCAACTAATCAACGAAATTATTTGGGTATTCGATCAC
TCCCATCTGCCCGAGTGTCGAGGGTTCGATGTGTATGTTGTCCATCGTTG
ATATTTTTTATGCGAAATAGATTGCTTCTGTGTAGGCGATGATTTCACGC
CCTTGGCATGCCTTCACGCCCTTGGACTGATACGCTCAGCATGTGTCAAT
GCGCGAGTGTGCAACAACACAAGTAATCAAGTGTATTGTGGTTGCAGCGT
ATTTCGGAACACACTTAAGAGTACACGTAGCGGAAGCAAAGGGCGGCCAC
GGTCATCCATGCAGTTTCACATCTTGCAGCACGAGCGGTACGTGTTCAGC
CCTATTGTGCTGACCGCATGATAAGTTCAACCGTAAGAGCAAGAGGGGGC
GATGTCGTTCCTCCTTTGCTGCGAAACCATGTTTTTTTTTTTTCTTTTTG
TCTGCCCATTATTGGCTTTTTGTCGTCTGCCCTCTGGCCCCCATCCTCCA
CTTCTACTCTAGCTAGACGACCCAACCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1243:16..2193-

>mRNA_L-elsbetiae_contig1243.1982.1 ID=mRNA_L-elsbetiae_contig1243.1982.1|Name=mRNA_L-elsbetiae_contig1243.1982.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=636bp|location=Sequence derived from alignment at L-elsbetiae_contig1243:16..2193- (Laminarionema elsbetiae ELsaHSoW15)
ATGCTGGACGTGCAGTGCAAGAGGTATCTCGATAAAGCAAAGTTCATCAA
TGCCGATAAGAGGCGCCGCGCTGCTAGGAAGAAGATTGCCTTAGAAGCCA
ACAAGCGAGCCCGGGCCGAGAAAGGCCGCCCGAAGCGTGCTGCGAAGATG
GCTACACTTGTGAGGCTTCTCGATGCGATGCTGGACGTGCAGTGCAAGAG
GTATCTCGATAAAGCAAAGTTCATCAATGCCGATAAGAGGCGCCGCGCTG
CTAGGAAGAAGATTGCCTTAGAAGCCAACAAGCGAGCCCGGGCCGAGAAA
GGCCGCCCGAAGCGTGCTGCGAAGATGGCTACACTTGTGAGGCTTCTCGA
TGCGGCAGTGCAAGCCGAACCATGGAACGTGTTACTCCACGACAGGAAAA
AGGGCGAGGCATGCGGGCGGACGGCGGGTTCTCGAATACCTGAAGGAAGG
CGGAGGCACCCGGCTAGATGGTGCGGAGGGTGGCCGTTCGTGTGAGCAGT
GCAAGCCGAACCATGGAACGTGTTACTCCACGACAGGAAAAAGGGCGAGG
CATGCGGGCGGACGGCGGGTTCTCGAATACCTGAAGGAAGGCGGAGGCAC
CCGGCTAGATGGTGCGGAGGGTGGCCGTTCGTGTGA
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