mRNA_L-elsbetiae_contig12407.1968.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12407.1968.1
Unique NamemRNA_L-elsbetiae_contig12407.1968.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig12407.1968.1 vs. uniprot
Match: D7G059_ECTSI (Similar to Tetratricopeptide repeat protein 37 (TPR repeat protein 37) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G059_ECTSI)

HSP 1 Score: 196 bits (498), Expect = 3.820e-54
Identity = 131/218 (60.09%), Postives = 148/218 (67.89%), Query Frame = 1 
Query:    4 SLRCLVNDKLSNGNAGGSAAVGDPMASAALALDRVDAAIGAFDDSFRLRGAPAGGGAYADVLGHLGLARGSLLLKLG--RLEEARSAVEMVSAGALLVGCSGGGDVHQQHGGAGASLAATSEAELVTAGRPPSLYCRALCVASELDLSEGDTESAKAKLKEVLVVDSRSADALSRLGWLLLGFGSXXXXXXXXXXXXTRERDIEAARPLLERAVGEEP 651
            SLRCLV+++L +G        GDP A+AAL L RVDAA+ AFD+SFRLRG P G G YADVLG LGLAR SLLLKLG  RLEEARSAVEM SAGA+ V         Q   GA   +            RPPSL+CRALCVASE+DL+ G+ E AK KL+E L  ++   DALSRLGWLLLGFG XXXXXXXX        D+EAARPLLERAV EEP
Sbjct:  330 SLRCLVDERLGDGG-------GDPAAAAALGLGRVDAAMTAFDESFRLRGPPDGEGDYADVLGRLGLARASLLLKLGGGRLEEARSAVEMASAGAVHV-------ARQASAGADDGIC-----------RPPSLHCRALCVASEVDLAGGEREQAKGKLREALEAEAGFGDALSRLGWLLLGFGGXXXXXXXXRRAPCEREDVEAARPLLERAVAEEP 522
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BLAST of mRNA_L-elsbetiae_contig12407.1968.1 vs. uniprot
Match: A0A6H5JAD5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAD5_9PHAE)

HSP 1 Score: 190 bits (483), Expect = 2.350e-52
Identity = 126/218 (57.80%), Postives = 147/218 (67.43%), Query Frame = 1 
Query:    4 SLRCLVNDKLSNGNAGGSAAVGDPMASAALALDRVDAAIGAFDDSFRLRGAPAGGGAYADVLGHLGLARGSLLLKLG--RLEEARSAVEMVSAGALLVGCSGGGDVHQQHGGAGASLAATSEAELVTAGRPPSLYCRALCVASELDLSEGDTESAKAKLKEVLVVDSRSADALSRLGWLLLGFGSXXXXXXXXXXXXTRERDIEAARPLLERAVGEEP 651
            SLRCLV+++L +G        GDP A+AAL L RVDAA+ AFD+S RLRG P G G YADVLG LGLAR SLLLKLG  RLEEAR+AVEM SAGA+ V                   +A ++  +    RPPSLYCRALCVAS++DL+ G+ E AK KL+E L  ++   DALSRLGWLLLGFG XXXXXXX         D+EAARPLLERAV EEP
Sbjct:  505 SLRCLVDERLGDGG-------GDPAAAAALGLGRVDAAMAAFDESSRLRGKPDGEGDYADVLGRLGLARASLLLKLGGGRLEEARAAVEMASAGAVHVA---------------RQASAVADDGIC---RPPSLYCRALCVASDVDLAGGEREQAKGKLREALEAEAGFGDALSRLGWLLLGFGGXXXXXXXGKRAPCEREDVEAARPLLERAVAEEP 697
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12407.1968.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G059_ECTSI3.820e-5460.09Similar to Tetratricopeptide repeat protein 37 (TP... [more]
A0A6H5JAD5_9PHAE2.350e-5257.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12407contigL-elsbetiae_contig12407:4513..5165 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score198.4
Seed ortholog evalue3.5e-48
Seed eggNOG ortholog2880.D7G059
Preferred nameTTC37
KEGG koko:K12600
KEGG Pathwayko03018,map03018
KEGG ModuleM00392
Hectar predicted targeting categoryother localisation
GOsGO:0000184,GO:0000288,GO:0000291,GO:0000785,GO:0000956,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005829,GO:0006139,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010468,GO:0010605,GO:0010608,GO:0010629,GO:0016070,GO:0016071,GO:0016441,GO:0016458,GO:0019222,GO:0019439,GO:0031974,GO:0031981,GO:0032991,GO:0034427,GO:0034641,GO:0034655,GO:0035327,GO:0040029,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043928,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0055087,GO:0060255,GO:0065007,GO:0070013,GO:0070478,GO:0070481,GO:0071704,GO:0090304,GO:1901360,GO:1901361,GO:1901575
EggNOG free text desc.exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay
EggNOG OGsKOG1127@1,KOG1127@2759
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-28_003830.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019
Exons1
Model size654
Cds size651
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815436.0526958-CDS-L-elsbetiae_contig12407:4512..51631622815436.0526958-CDS-L-elsbetiae_contig12407:4512..5163Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12407 4513..5163 +
1691682897.1950934-CDS-L-elsbetiae_contig12407:4512..51631691682897.1950934-CDS-L-elsbetiae_contig12407:4512..5163Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12407 4513..5163 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12407.1968.1prot_L-elsbetiae_contig12407.1968.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12407 4513..5163 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12407.1968.1

>prot_L-elsbetiae_contig12407.1968.1 ID=prot_L-elsbetiae_contig12407.1968.1|Name=mRNA_L-elsbetiae_contig12407.1968.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=217bp
QSLRCLVNDKLSNGNAGGSAAVGDPMASAALALDRVDAAIGAFDDSFRLR
GAPAGGGAYADVLGHLGLARGSLLLKLGRLEEARSAVEMVSAGALLVGCS
GGGDVHQQHGGAGASLAATSEAELVTAGRPPSLYCRALCVASELDLSEGD
TESAKAKLKEVLVVDSRSADALSRLGWLLLGFGSGASASASGCGKGTRER
DIEAARPLLERAVGEEP
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mRNA from alignment at L-elsbetiae_contig12407:4513..5165+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12407.1968.1 ID=mRNA_L-elsbetiae_contig12407.1968.1|Name=mRNA_L-elsbetiae_contig12407.1968.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=653bp|location=Sequence derived from alignment at L-elsbetiae_contig12407:4513..5165+ (Laminarionema elsbetiae ELsaHSoW15)
CAGTCGCTGCGCTGCCTTGTGAACGACAAGCTTAGCAATGGAAACGCGGG
CGGCTCGGCGGCCGTGGGAGACCCCATGGCGTCGGCGGCGCTAGCCCTGG
ATCGCGTGGACGCCGCGATCGGGGCGTTCGACGATTCGTTTCGCCTCCGG
GGCGCGCCTGCTGGCGGCGGGGCTTACGCAGATGTTCTTGGGCATTTGGG
CCTTGCGCGGGGATCCCTGCTGCTCAAGCTCGGGCGCCTTGAGGAAGCGC
GGTCGGCGGTGGAAATGGTTTCGGCAGGAGCTTTGCTTGTCGGCTGCTCG
GGTGGGGGTGACGTGCATCAGCAGCACGGTGGGGCTGGTGCATCATTAGC
AGCGACATCGGAGGCAGAGCTTGTGACTGCTGGTCGACCGCCTTCCCTGT
ACTGCCGAGCGCTTTGCGTGGCATCGGAGCTGGACCTGTCGGAGGGTGAC
ACGGAAAGCGCCAAGGCGAAGCTTAAGGAGGTATTGGTGGTGGATTCGCG
CTCCGCGGATGCACTTAGCAGGCTTGGCTGGCTGTTGCTGGGGTTCGGCA
GTGGGGCGTCCGCATCGGCATCGGGGTGCGGGAAGGGCACACGGGAACGG
GACATCGAAGCTGCGAGGCCGCTTTTGGAGAGGGCTGTGGGAGAGGAGCC
AGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12407:4513..5165+

>mRNA_L-elsbetiae_contig12407.1968.1 ID=mRNA_L-elsbetiae_contig12407.1968.1|Name=mRNA_L-elsbetiae_contig12407.1968.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1302bp|location=Sequence derived from alignment at L-elsbetiae_contig12407:4513..5165+ (Laminarionema elsbetiae ELsaHSoW15)
CAGTCGCTGCGCTGCCTTGTGAACGACAAGCTTAGCAATGGAAACGCGGG
CGGCTCGGCGGCCGTGGGAGACCCCATGGCGTCGGCGGCGCTAGCCCTGG
ATCGCGTGGACGCCGCGATCGGGGCGTTCGACGATTCGTTTCGCCTCCGG
GGCGCGCCTGCTGGCGGCGGGGCTTACGCAGATGTTCTTGGGCATTTGGG
CCTTGCGCGGGGATCCCTGCTGCTCAAGCTCGGGCGCCTTGAGGAAGCGC
GGTCGGCGGTGGAAATGGTTTCGGCAGGAGCTTTGCTTGTCGGCTGCTCG
GGTGGGGGTGACGTGCATCAGCAGCACGGTGGGGCTGGTGCATCATTAGC
AGCGACATCGGAGGCAGAGCTTGTGACTGCTGGTCGACCGCCTTCCCTGT
ACTGCCGAGCGCTTTGCGTGGCATCGGAGCTGGACCTGTCGGAGGGTGAC
ACGGAAAGCGCCAAGGCGAAGCTTAAGGAGGTATTGGTGGTGGATTCGCG
CTCCGCGGATGCACTTAGCAGGCTTGGCTGGCTGTTGCTGGGGTTCGGCA
GTGGGGCGTCCGCATCGGCATCGGGGTGCGGGAAGGGCACACGGGAACGG
GACATCGAAGCTGCGAGGCCGCTTTTGGAGAGGGCTGTGGGAGAGGAGCC
ACAGTCGCTGCGCTGCCTTGTGAACGACAAGCTTAGCAATGGAAACGCGG
GCGGCTCGGCGGCCGTGGGAGACCCCATGGCGTCGGCGGCGCTAGCCCTG
GATCGCGTGGACGCCGCGATCGGGGCGTTCGACGATTCGTTTCGCCTCCG
GGGCGCGCCTGCTGGCGGCGGGGCTTACGCAGATGTTCTTGGGCATTTGG
GCCTTGCGCGGGGATCCCTGCTGCTCAAGCTCGGGCGCCTTGAGGAAGCG
CGGTCGGCGGTGGAAATGGTTTCGGCAGGAGCTTTGCTTGTCGGCTGCTC
GGGTGGGGGTGACGTGCATCAGCAGCACGGTGGGGCTGGTGCATCATTAG
CAGCGACATCGGAGGCAGAGCTTGTGACTGCTGGTCGACCGCCTTCCCTG
TACTGCCGAGCGCTTTGCGTGGCATCGGAGCTGGACCTGTCGGAGGGTGA
CACGGAAAGCGCCAAGGCGAAGCTTAAGGAGGTATTGGTGGTGGATTCGC
GCTCCGCGGATGCACTTAGCAGGCTTGGCTGGCTGTTGCTGGGGTTCGGC
AGTGGGGCGTCCGCATCGGCATCGGGGTGCGGGAAGGGCACACGGGAACG
GGACATCGAAGCTGCGAGGCCGCTTTTGGAGAGGGCTGTGGGAGAGGAGC
CA
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