mRNA_L-elsbetiae_contig12373.1945.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12373.1945.1
Unique NamemRNA_L-elsbetiae_contig12373.1945.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig12373.1945.1 vs. uniprot
Match: D8LN24_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN24_ECTSI)

HSP 1 Score: 167 bits (424), Expect = 1.470e-49
Identity = 98/118 (83.05%), Postives = 103/118 (87.29%), Query Frame = 1 
Query:    1 RFYDDDGDEGTSDWGGTDLTGAAMGGSILGPEFPLRKGMVGGVGGSSRFSAGPRSQASFAANSVAASGRSVQSSVARGGAPSIASSRSNFPPRGGVSPPYSLGGGGDGGGASPLAGMV 354
            ++Y+DDG   TSDWGGTDLTGAAMGGSILGPEFPLRKGMVGG G SSRFSAGPRSQASFAANSVAASGRSVQSSV  GGA    SSRSNFPPRGG+SPPYSLGG G GGGASPL G+ 
Sbjct:  151 KYYEDDG---TSDWGGTDLTGAAMGGSILGPEFPLRKGMVGGGGPSSRFSAGPRSQASFAANSVAASGRSVQSSVTIGGA----SSRSNFPPRGGISPPYSLGGAG-GGGASPLRGLA 260
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BLAST of mRNA_L-elsbetiae_contig12373.1945.1 vs. uniprot
Match: A0A6H5KYX6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYX6_9PHAE)

HSP 1 Score: 155 bits (392), Expect = 3.010e-44
Identity = 93/116 (80.17%), Postives = 96/116 (82.76%), Query Frame = 1 
Query:    7 YDDDGDEGTSDWGGTDLTGAAMGGSILGPEFPLRKGMVGGVGGSSRFSAGPRSQASFAANSVAASGRSVQSSVARGGAPSIASSRSNFPPRGGVSPPYSLGGGGDGGGASPLAGMV 354
            Y +DGD   SDWGGTDLTGAAMGGSILGPEFPLRKGMVGG G SSRFSAGPRSQASFAANSVAASGRS+QSSV  GGA    SSRSNFPPRGG SPPYSLGGG     ASPL G+ 
Sbjct:  186 YYEDGD--MSDWGGTDLTGAAMGGSILGPEFPLRKGMVGGGGPSSRFSAGPRSQASFAANSVAASGRSIQSSVTTGGA----SSRSNFPPRGGTSPPYSLGGG-----ASPLRGLA 290
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12373.1945.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LN24_ECTSI1.470e-4983.05Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KYX6_9PHAE3.010e-4480.17Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12373contigL-elsbetiae_contig12373:1210..4559 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-13_002190.1
Exons2
Model size366
Cds size366
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815432.1493278-CDS-L-elsbetiae_contig12373:1209..14071622815432.1493278-CDS-L-elsbetiae_contig12373:1209..1407Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12373 1210..1407 -
1691682895.427469-CDS-L-elsbetiae_contig12373:1209..14071691682895.427469-CDS-L-elsbetiae_contig12373:1209..1407Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12373 1210..1407 -
1622815432.1887145-CDS-L-elsbetiae_contig12373:4391..45591622815432.1887145-CDS-L-elsbetiae_contig12373:4391..4559Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12373 4392..4559 -
1691682895.4370267-CDS-L-elsbetiae_contig12373:4391..45591691682895.4370267-CDS-L-elsbetiae_contig12373:4391..4559Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12373 4392..4559 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12373.1945.1prot_L-elsbetiae_contig12373.1945.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12373 1210..4559 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12373.1945.1

>prot_L-elsbetiae_contig12373.1945.1 ID=prot_L-elsbetiae_contig12373.1945.1|Name=mRNA_L-elsbetiae_contig12373.1945.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=122bp
RFYDDDGDEGTSDWGGTDLTGAAMGGSILGPEFPLRKGMVGGVGGSSRFS
AGPRSQASFAANSVAASGRSVQSSVARGGAPSIASSRSNFPPRGGVSPPY
SLGGGGDGGGASPLAGMVGIEG
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mRNA from alignment at L-elsbetiae_contig12373:1210..4559-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12373.1945.1 ID=mRNA_L-elsbetiae_contig12373.1945.1|Name=mRNA_L-elsbetiae_contig12373.1945.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3350bp|location=Sequence derived from alignment at L-elsbetiae_contig12373:1210..4559- (Laminarionema elsbetiae ELsaHSoW15)
AGATTCTACGACGATGACGGCGATGAGGGGACCTCGGACTGGGGAGGCAC
GGACCTCACTGGGGCGGCCATGGGCGGAAGCATCCTGGGGCCGGAGTTTC
CTCTGCGAAAGGGCATGGTCGGTGGCGTGGGGGGGTCCTCTCGCTTCTCG
GCGGGGCCCCGCTCGCAGGTGAAAAATCGTCCTTTTCCGTGTATTTTTCG
AGCCGACTGCATTAAATACCCTCATCCAGCCTGTGAAAAGAAAAAATAGC
CTTTCGGGGACAGTTGTAGAGACACAAACCCTCCCCCCCCCTGCTAAATA
CAGTGGCATAAAATCAACAATCCGTATTTGGGTTTATGAACGGGGTATCT
ACGGGGTATCTCGCTACGTTGTGTTGGTGCTTGGTTTGCAGTGCAGGCGT
TCTTCCTTCCCAGCCAACTATCCAGTTGCAGCATAAATAACCCGGTCGTA
CACGGTAATGCATGATGGGTGTACTGTAGTCCATCTACAGACGAGGATTA
GTACATTGTTTCGTCTTATTTTTTTCTCCTTTTATTCATTCTGTTTTGTT
ACATCTCCTGTCTCTCCCCTTGGGCATTCTTTTGTTGGTAGATTAACTGT
ACTAGTTACCATTTTTCTTTTTGTTAAGGCTAAGGCTTTCTTCGCAGCCA
ACTCGGGCTGTATCAGTGCGGTAGGTAGCATTGCATGTCTACGGATCAAG
CTCAGCACATTATCTCGTTTCTCCTTTTGGTCTTGTTGCTGCCGCCGACA
TACATACCTACTTCGTTGAATCTGCCGTCTTCCCTTCGTGTGCGTCTCTC
CTAGGTACAGTTTAATTTTGATTAAGTTATAAGGGGGCACTTGTTTCGCT
TCTTTACTTCGAGTTCTCGCCGCAAAGTGCCGTGTTGGTGGTGAGGAAAA
AACAGGTCTTTAGCTTCTGTACTTCTCGAGGATGCAGCAAAAAGGACGAA
GCGACTTGATGCTCTAGCCGTGGCTTGGGGACGATTTACACCAATCACAA
GCTCATCGGGGACTCGCAGACAAAATACACGCACACAATACCCCGCACAT
AAATACCCCGCACAAAAGCCCCCGCCCCCTCCTTCCCGCCCTGGAACCAC
TGCACCAGCCCTAGGAGCTCACAAAACCCATCTCAGACCAAACAAACTAG
GGGGGGTGCGATATAGTGCTCATAGCTAGTGTCTATGCAGATTTTAAACT
CAAAATCGCTTTCCTGAGTGTCGAACTAGAGCTTTATTATAACACACGTT
AGTGCGCTCGGCTAGGCCAGCAGCAGTAGACGGCAGCAGCACGTCTAATT
GCAGTGCAGGAGTTAGCTAATTTTAGTGGTTGTTCTGCACTTCTTAAACC
CTCTTCTTGCCGACGTGCGCGGTCTTGCGATGGATCTCTTCAGTGATCAA
GAAGCTGCGTATTTTGTTGGAATCGTGCTCGTCTGTCTTGCAGCTGGCCC
TCTTTTTCCGACATCAAATTTGTGCGATGGCACCTCTAATTGCAGCGCAA
AAACTGCCTACTAGATTTTGGCCCGCTCTGTAGTCACACATCTCTACTAC
AGTTGGGGACCCTCTATAGTGCCGGCTGAGTAGTGCCGGTAAAATCTCTG
ACACAGACAGCGCCCTTAATAGTGCCGGACCGGCACTATTGAGGGCTGCC
CCGTTATAGTGCCGGTTTGGCACCACGGCGCCCCAGAATAGTGCCGGTTC
ACTACACACACACACACACACACACACATACAAGCCAGCGGACAGACGCC
ACACAGAAAAGTGGGTACACGTGCTGCTGCTGCAGACCCGATAAGCTCTA
CGCAGAGCGGCACCATGCCTTGTGCGGAAGATGACGATGATCGCAGGGTT
AGGGTTAAGATGACGTTCTACGTAACGAAAGCGAAGGTGGCGATTATCGC
AGCGCATTCCGCTAAGCGGGTGCGCCAGGCAGGCATGAGAGAGTGTGTCG
CGACGTAGCCAGGGCGGGGGGTACACAGTACATGGTTGTTCGTTTTTCTT
GCGGTGCGCTTCCTGTGGAGCTTGTTGTGGTTTGTTTGTGTTTGTTTTTT
TCTTGCAACATCAAAGCGGGTGCGCCAGGCAGACATGGGAGTTTGTCGCG
ACTTAGTGAGGGCAGGGAGTACAGTACAGATTGCTTGTTTTTTTTGCAGT
GCGCTTCTTGTCGTGTTTCTTTTTCATTTTTTTTGTATCTTGCAACATTG
AAGGAGGGCAACGAGGACTGAGATTTAGCTTCGTTCACTATCAATACCCC
AGTAATCTGGTTGGTATCTCCGTTCACCTCATAGCAGGCATGTCACGGGT
TCGATTCCTGGCGGCAGCGACTTTTTATCGCTAAAAAAGAGCTTTTTCTC
TCGCTTTCGTCCCTGTCAGTAGATAGTGCGTGTATGTACACAAATTTCGA
CCTCACCGTCGACAAGGGAAAGGGACGGCTGAAACCTTCCCGCGACAAAA
ATCTTAGGCAAGCACCGCGGAACGGGGGAGTGGGGGCCACGAGGAAAAAA
AATACCCTTCTGTGTGACCACGGTTCAGCCAGTACTCTGGCAAGACACCC
TCGTGGTAGGGAGCCCGTCGAGCACTGGAAATAAATGTGGAAATGTAAGA
ACGAAAATAAAAAAAACATGATCTCGATCCATTACGTACTCTGTTGGCCC
CGCAGAGCGTGAGCGCCTCACCATGGAATCAAACACCTCCTCAATAGTGC
CGGACGTCCGGCACTACTGAGGCACTATTATGAATATTGCCGGTGCCCGG
TAGGTGCCGGTAAAACACTACCCGGCACTATAGAGGCCCCCCCACTGTAT
ACAGCCTCAAAGTCGCGTTTTGGATCACTTCCTGCAACCTGAGATATCGG
CTTCTTTGTGCGTGGGTATACTGAGGCCCTGTGCCTTCTGTCCGTGACGG
AAGGCGCCTCTTCAAATGTCTCCCTCACATGTGCTCCTTCAAAAATTAGT
CCAAATAACACCGAGTATATAAATAAATATACATACACACTTCTATTTTT
TTGTTTGCCAATATTTTTATTATTCATTATTTTCCACACAGGCTTCCTTC
GCCGCAAACTCCGTTGCAGCCTCCGGACGCTCCCTTAAAAAAATAGTCCA
AATAACACCGAGTATATAAATTACATACACACTTCTATTATTTTCCGCAC
AGGCCTCCTTCGCCGCAAACTCCGTTGCAGCCTCCGGACGCTCGGTGCAA
AGCTCGGTTGCCCGCGGGGGGGCACCGTCGATCGCGTCGTCGAGGTCGAA
CTTCCCGCCCAGGGGAGGCGTAAGCCCCCCGTACAGCCTCGGCGGCGGCG
GCGACGGCGGTGGTGCTTCGCCACTGGCCGGGATGGTGGGGATAGAGGGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12373:1210..4559-

>mRNA_L-elsbetiae_contig12373.1945.1 ID=mRNA_L-elsbetiae_contig12373.1945.1|Name=mRNA_L-elsbetiae_contig12373.1945.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=732bp|location=Sequence derived from alignment at L-elsbetiae_contig12373:1210..4559- (Laminarionema elsbetiae ELsaHSoW15)
AGATTCTACGACGATGACGGCGATGAGGGGACCTCGGACTGGGGAGGCAC
GGACCTCACTGGGGCGGCCATGGGCGGAAGCATCCTGGGGCCGGAGTTTC
CTCTGCGAAAGGGCATGGTCGGTGGCGTGGGGGGGTCCTCTCGCTTCTCG
GCGGGGCCCCGCTCGCAGAGATTCTACGACGATGACGGCGATGAGGGGAC
CTCGGACTGGGGAGGCACGGACCTCACTGGGGCGGCCATGGGCGGAAGCA
TCCTGGGGCCGGAGTTTCCTCTGCGAAAGGGCATGGTCGGTGGCGTGGGG
GGGTCCTCTCGCTTCTCGGCGGGGCCCCGCTCGCAGGCCTCCTTCGCCGC
AAACTCCGTTGCAGCCTCCGGACGCTCGGTGCAAAGCTCGGTTGCCCGCG
GGGGGGCACCGTCGATCGCGTCGTCGAGGTCGAACTTCCCGCCCAGGGGA
GGCGTAAGCCCCCCGTACAGCCTCGGCGGCGGCGGCGACGGCGGTGGTGC
TTCGCCACTGGCCGGGATGGTGGGGATAGAGGGTGCCTCCTTCGCCGCAA
ACTCCGTTGCAGCCTCCGGACGCTCGGTGCAAAGCTCGGTTGCCCGCGGG
GGGGCACCGTCGATCGCGTCGTCGAGGTCGAACTTCCCGCCCAGGGGAGG
CGTAAGCCCCCCGTACAGCCTCGGCGGCGGCGGCGACGGCGGTGGTGCTT
CGCCACTGGCCGGGATGGTGGGGATAGAGGGT
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