mRNA_L-elsbetiae_contig12368.1941.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12368.1941.1
Unique NamemRNA_L-elsbetiae_contig12368.1941.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig12368.1941.1 vs. uniprot
Match: D7FSU7_ECTSI (FYVE-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSU7_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 1.280e-17
Identity = 35/45 (77.78%), Postives = 42/45 (93.33%), Query Frame = 1 
Query:   19 KAQSVKGVMGASTVDSSLWVPDDMALNCCVCKAEFTMYRRRHHCR 153
            K+QSV+G MG+S+VD+S+WVPDDMA NCCVCKAEF +YRRRHHCR
Sbjct:   67 KSQSVRGPMGSSSVDASMWVPDDMAPNCCVCKAEFAVYRRRHHCR 111
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BLAST of mRNA_L-elsbetiae_contig12368.1941.1 vs. uniprot
Match: A0A7S0SXA2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SXA2_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 6.240e-6
Identity = 16/28 (57.14%), Postives = 23/28 (82.14%), Query Frame = 1 
Query:   70 LWVPDDMALNCCVCKAEFTMYRRRHHCR 153
            +WVPD +   CC+CK++F ++RRRHHCR
Sbjct:   69 IWVPDTIEDKCCICKSDFNIWRRRHHCR 96
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BLAST of mRNA_L-elsbetiae_contig12368.1941.1 vs. uniprot
Match: A0A152A990_9MYCE (Pleckstrin (PH) domain-containing protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A152A990_9MYCE)

HSP 1 Score: 49.7 bits (117), Expect = 1.520e-5
Identity = 17/32 (53.12%), Postives = 26/32 (81.25%), Query Frame = 1 
Query:   58 VDSSLWVPDDMALNCCVCKAEFTMYRRRHHCR 153
            +D S W+PD++++NC +CK EF++  RRHHCR
Sbjct:    9 IDRSNWIPDELSINCMLCKKEFSVLFRRHHCR 40
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BLAST of mRNA_L-elsbetiae_contig12368.1941.1 vs. uniprot
Match: A0A1J4KME0_9EUKA (FYVE zinc finger family protein n=1 Tax=Tritrichomonas foetus TaxID=1144522 RepID=A0A1J4KME0_9EUKA)

HSP 1 Score: 49.3 bits (116), Expect = 2.080e-5
Identity = 17/28 (60.71%), Postives = 24/28 (85.71%), Query Frame = 1 
Query:   70 LWVPDDMALNCCVCKAEFTMYRRRHHCR 153
            +W+PDD+A NC VCK++FT+  R+HHCR
Sbjct:  331 VWIPDDLAPNCMVCKSKFTVINRKHHCR 358
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BLAST of mRNA_L-elsbetiae_contig12368.1941.1 vs. uniprot
Match: A0A137P479_CONC2 (Uncharacterized protein n=1 Tax=Conidiobolus coronatus (strain ATCC 28846 / CBS 209.66 / NRRL 28638) TaxID=796925 RepID=A0A137P479_CONC2)

HSP 1 Score: 48.9 bits (115), Expect = 2.880e-5
Identity = 21/47 (44.68%), Postives = 29/47 (61.70%), Query Frame = 1 
Query:   19 KAQSVKGVMGASTVDSS--LWVPDDMALNCCVCKAEFTMYRRRHHCR 153
            K Q V+  +     D S  +W+PD  A NC +C  EFT++RR+HHCR
Sbjct:  746 KKQLVEAALNRVVTDYSAPVWIPDANADNCMICSEEFTLFRRKHHCR 792
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BLAST of mRNA_L-elsbetiae_contig12368.1941.1 vs. uniprot
Match: A0A507CXB0_9FUNG (Uncharacterized protein n=1 Tax=Synchytrium endobioticum TaxID=286115 RepID=A0A507CXB0_9FUNG)

HSP 1 Score: 47.8 bits (112), Expect = 7.340e-5
Identity = 16/28 (57.14%), Postives = 23/28 (82.14%), Query Frame = 1 
Query:   70 LWVPDDMALNCCVCKAEFTMYRRRHHCR 153
            +W+PDD A +C  CK EF+++RR+HHCR
Sbjct:  435 IWIPDDQASSCMQCKEEFSIFRRKHHCR 462
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12368.1941.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FSU7_ECTSI1.280e-1777.78FYVE-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A7S0SXA2_9STRA6.240e-657.14Hypothetical protein (Fragment) n=1 Tax=Chromulina... [more]
A0A152A990_9MYCE1.520e-553.13Pleckstrin (PH) domain-containing protein n=1 Tax=... [more]
A0A1J4KME0_9EUKA2.080e-560.71FYVE zinc finger family protein n=1 Tax=Tritrichom... [more]
A0A137P479_CONC22.880e-544.68Uncharacterized protein n=1 Tax=Conidiobolus coron... [more]
A0A507CXB0_9FUNG7.340e-557.14Uncharacterized protein n=1 Tax=Synchytrium endobi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12368contigL-elsbetiae_contig12368:5336..5491 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.0
Seed ortholog evalue2.3e-14
Seed eggNOG ortholog2880.D7FSU7
KEGG koko:K12492
KEGG Pathwayko04144,map04144
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.lipid binding
EggNOG OGsKOG1729@1,KOG1729@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons1
Model size156
Cds size156
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815431.8418052-CDS-L-elsbetiae_contig12368:5335..54911622815431.8418052-CDS-L-elsbetiae_contig12368:5335..5491Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12368 5336..5491 +
1691682895.2849462-CDS-L-elsbetiae_contig12368:5335..54911691682895.2849462-CDS-L-elsbetiae_contig12368:5335..5491Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12368 5336..5491 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12368.1941.1prot_L-elsbetiae_contig12368.1941.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12368 5336..5491 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12368.1941.1

>prot_L-elsbetiae_contig12368.1941.1 ID=prot_L-elsbetiae_contig12368.1941.1|Name=mRNA_L-elsbetiae_contig12368.1941.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=52bp
VHTCPSKAQSVKGVMGASTVDSSLWVPDDMALNCCVCKAEFTMYRRRHHC
R*
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mRNA from alignment at L-elsbetiae_contig12368:5336..5491+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12368.1941.1 ID=mRNA_L-elsbetiae_contig12368.1941.1|Name=mRNA_L-elsbetiae_contig12368.1941.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=156bp|location=Sequence derived from alignment at L-elsbetiae_contig12368:5336..5491+ (Laminarionema elsbetiae ELsaHSoW15)
GTTCACACTTGCCCCAGCAAAGCGCAGTCTGTGAAGGGAGTCATGGGCGC
CTCCACGGTGGATTCCTCGCTGTGGGTGCCGGACGACATGGCGCTGAACT
GCTGCGTGTGCAAGGCCGAGTTCACCATGTACAGGCGGCGGCACCACTGC
AGGTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12368:5336..5491+

>mRNA_L-elsbetiae_contig12368.1941.1 ID=mRNA_L-elsbetiae_contig12368.1941.1|Name=mRNA_L-elsbetiae_contig12368.1941.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=312bp|location=Sequence derived from alignment at L-elsbetiae_contig12368:5336..5491+ (Laminarionema elsbetiae ELsaHSoW15)
GTTCACACTTGCCCCAGCAAAGCGCAGTCTGTGAAGGGAGTCATGGGCGC
CTCCACGGTGGATTCCTCGCTGTGGGTGCCGGACGACATGGCGCTGAACT
GCTGCGTGTGCAAGGCCGAGTTCACCATGTACAGGCGGCGGCACCACTGC
AGGTAGGTTCACACTTGCCCCAGCAAAGCGCAGTCTGTGAAGGGAGTCAT
GGGCGCCTCCACGGTGGATTCCTCGCTGTGGGTGCCGGACGACATGGCGC
TGAACTGCTGCGTGTGCAAGGCCGAGTTCACCATGTACAGGCGGCGGCAC
CACTGCAGGTAG
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