mRNA_L-elsbetiae_contig1234.1926.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1234.1926.1 vs. uniprot
Match: A0A6H5KS33_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KS33_9PHAE) HSP 1 Score: 233 bits (593), Expect = 4.330e-73 Identity = 117/155 (75.48%), Postives = 130/155 (83.87%), Query Frame = 2 Query: 50 MSLLRRSALGFLQEFVRGCKNPRQGQYSKRSQIGLYAGKDIRFGNTISFSHKKNQRTWKPNVQKKALYSEVLDEWIKFQLTTHALRCVDRAGGIDKYLLKTPDKWLNSAQGSNAKRKIQEVLAAKLAAGELSGFEHVSEEDDGTEGGLLAEEGQQ 514 MSLLRR+ +G LQ RGCKNP++ Q+SKRSQIGLYAGKDI FGNTISFSHKKN+RTWKPNVQKKALYSE LDEWIKF LTTHALRCVDRAGGIDKYLLKTPD+WLNS QGS AKRKI+E LAA+ G+ SG H EE+ G + GL AE G+Q Sbjct: 1 MSLLRRNTVGCLQTLARGCKNPKKPQHSKRSQIGLYAGKDIGFGNTISFSHKKNRRTWKPNVQKKALYSETLDEWIKFNLTTHALRCVDRAGGIDKYLLKTPDEWLNSVQGSKAKRKIEEALAAR---GDSSGELHAGEEEGGADAGLRAEGGRQ 152
BLAST of mRNA_L-elsbetiae_contig1234.1926.1 vs. uniprot
Match: A0A7S3ZX50_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZX50_9STRA) HSP 1 Score: 134 bits (338), Expect = 7.680e-35 Identity = 63/98 (64.29%), Postives = 78/98 (79.59%), Query Frame = 2 Query: 131 SKRSQIGLYAGKDIRFGNTISFSHKKNQRTWKPNVQKKALYSEVLDEWIKFQLTTHALRCVDRAGGIDKYLLKTPDKWLNSAQGSNAKRKIQEVLAAK 424 S RS+ G+YAGKDIRFGN ISFSH+K +RT+KPN Q+K L+SE L W++F LTTHALRC+DRAGGID YLLKTPD L S G+NA+R I+ A++ Sbjct: 60 SNRSKRGIYAGKDIRFGNNISFSHRKTRRTFKPNAQRKRLWSETLGCWLRFNLTTHALRCIDRAGGIDAYLLKTPDAKLGSIAGANARRMIEAARASR 157
BLAST of mRNA_L-elsbetiae_contig1234.1926.1 vs. uniprot
Match: A0A7S2RZD4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RZD4_9STRA) HSP 1 Score: 119 bits (298), Expect = 3.270e-29 Identity = 54/95 (56.84%), Postives = 73/95 (76.84%), Query Frame = 2 Query: 131 SKRSQIGLYAGKDIRFGNTISFSHKKNQRTWKPNVQKKALYSEVLDEWIKFQLTTHALRCVDRAGGIDKYLLKTPDKWLNSAQGSNAKRKIQEVL 415 S R+ GL+ KDIRFGN +S S +K +R+WKPN Q K L+SE L+E++KF+ TT+ L+C+D+ GG+D YLL+TPDK LNS G AKR+I+EVL Sbjct: 18 SGRALRGLFGNKDIRFGNKVSHSERKTRRSWKPNAQNKRLWSETLEEFLKFKTTTYVLKCIDKVGGLDNYLLRTPDKKLNSITGLAAKRRIEEVL 112
BLAST of mRNA_L-elsbetiae_contig1234.1926.1 vs. uniprot
Match: A0A7S2HHC9_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HHC9_9STRA) HSP 1 Score: 118 bits (295), Expect = 4.190e-29 Identity = 56/98 (57.14%), Postives = 72/98 (73.47%), Query Frame = 2 Query: 131 SKRSQIGLYAGKDIRFGNTISFSHKKNQRTWKPNVQKKALYSEVLDEWIKFQLTTHALRCVDRAGGIDKYLLKTPDKWLNSAQGSNAKRKIQEVLAAK 424 S R+ GL+ GKD+RFGN +S S +K +R WKPNVQ+K L+SE L ++++F +T HA+RCVD+AGG+D YLL PDK L S QG AK KI E L AK Sbjct: 16 SGRALRGLFGGKDVRFGNKVSHSERKTRRMWKPNVQRKKLWSETLQDYLRFNMTVHAMRCVDKAGGVDNYLLAIPDKDLKSDQGLAAKCKIIEKLQAK 113
BLAST of mRNA_L-elsbetiae_contig1234.1926.1 vs. uniprot
Match: A0A7S2C450_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C450_9STRA) HSP 1 Score: 116 bits (291), Expect = 3.450e-28 Identity = 55/98 (56.12%), Postives = 70/98 (71.43%), Query Frame = 2 Query: 131 SKRSQIGLYAGKDIRFGNTISFSHKKNQRTWKPNVQKKALYSEVLDEWIKFQLTTHALRCVDRAGGIDKYLLKTPDKWLNSAQGSNAKRKIQEVLAAK 424 S R+ GLY GKD+ FGN +S S +K +R WKPNVQKK L+SE L +W+KF +TT A+RCVD+AGG+D YLL D + S QG AKR+I+ LA K Sbjct: 42 SGRAARGLYGGKDVGFGNMVSHSERKTRRMWKPNVQKKRLWSESLGDWVKFNVTTQAMRCVDKAGGLDNYLLGLKDGKIGSIQGLAAKRRIEAALAEK 139
BLAST of mRNA_L-elsbetiae_contig1234.1926.1 vs. uniprot
Match: A0A7S3K4M7_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K4M7_9STRA) HSP 1 Score: 114 bits (286), Expect = 1.600e-27 Identity = 52/99 (52.53%), Postives = 76/99 (76.77%), Query Frame = 2 Query: 131 SKRSQIGLYAGKDIRFGNTISFSHKKNQRTWKPNVQKKALYSEVLDEWIKFQLTTHALRCVDRAGGIDKYLLKTPDKWLNSAQGSNAKRKIQEVLAAKL 427 S R++ GLY KD+R GN++SFS +K +R WKPNVQ K +S++L W++F++TTHA++C+D+ GGIDKY+L+TP+ LNS G+NAKR +L +KL Sbjct: 37 SNRAKRGLYHLKDVRSGNSVSFSERKTRRKWKPNVQTKKFWSQILCCWLRFKVTTHAIKCIDKKGGIDKYILETPESKLNSIAGNNAKR----MLLSKL 131
BLAST of mRNA_L-elsbetiae_contig1234.1926.1 vs. uniprot
Match: D3BM00_POLPP (Uncharacterized protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BM00_POLPP) HSP 1 Score: 114 bits (286), Expect = 1.900e-27 Identity = 52/111 (46.85%), Postives = 74/111 (66.67%), Query Frame = 2 Query: 92 FVRGCKNPRQGQYSKRSQIGLYAGKDIRFGNTISFSHKKNQRTWKPNVQKKALYSEVLDEWIKFQLTTHALRCVDRAGGIDKYLLKTPDKWLNSAQGSNAKRKIQEVLAAK 424 F R NP KR+Q LY G+ I++GN+ISFSHKK +RTWKPNVQ K +S++L++ IK +TT+ +RC+D+AG D Y++ T DK L+S GS+ K ++ L K Sbjct: 12 FTRASNNPHSANILKRAQRALYGGRTIQYGNSISFSHKKTRRTWKPNVQSKTYHSDILNQDIKVDVTTYTMRCIDKAGNFDNYIINTKDKDLDSKLGSDLKVLLKSTLREK 122
BLAST of mRNA_L-elsbetiae_contig1234.1926.1 vs. uniprot
Match: A0A835YSL8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSL8_9STRA) HSP 1 Score: 113 bits (283), Expect = 8.170e-27 Identity = 61/119 (51.26%), Postives = 79/119 (66.39%), Query Frame = 2 Query: 59 LRRSALGFLQEFVRGCKNPRQGQYSKRSQIGLYAGKDIRFGNTISFSHKKNQRTWKPNVQKKALYSEVLDEWIKFQLTTHALRCVDRAGGIDKYLLKTPDKWLNSAQGSNAKRKIQEVL 415 +R+SA+ FL+ F R P YS RSQ G+YAGKD+RFGN FS KK++R W PNVQ K L+SE+L E I ++TT ALR VD+AGG+D YLL T D L S+Q S ++ E + Sbjct: 5 VRQSAVKFLEGFTRASSKP--NLYSNRSQRGMYAGKDVRFGNKTCFSAKKSRRKWLPNVQSKRLWSELLREHIPLKVTTAALRGVDKAGGLDNYLLYTTDDRLRSSQVSAINGRVVEAI 121
BLAST of mRNA_L-elsbetiae_contig1234.1926.1 vs. uniprot
Match: A0A7S2V663_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V663_9STRA) HSP 1 Score: 110 bits (276), Expect = 4.430e-26 Identity = 57/124 (45.97%), Postives = 82/124 (66.13%), Query Frame = 2 Query: 62 RRSALGFLQEFVRGCKNPRQGQYSKRSQIGLYAGKDIRFGNTISFSHKKNQRTWKPNVQKKALYSEVLDEWIKFQLTTHALRCVDRAGGIDKYLLKTPDK---WLNSAQGSNAKRKIQEVLAAK 424 R + FL F+RG S R+ GLYAGKDIRFGN++S S++K +R++KPNV K L+S++LD WI F+++ HALRC+D AGG+D Y+L+ K W +S Q A++++ E L AK Sbjct: 6 RHVSFSFLSNFIRG---------SGRASRGLYAGKDIRFGNSVSHSNRKTRRSFKPNVFNKRLWSDILDRWIPFKVSAHALRCIDHAGGLDNYILRNSLKTGDW-DSTQAVRARKEMLEALEAK 119
BLAST of mRNA_L-elsbetiae_contig1234.1926.1 vs. uniprot
Match: F4Q7J9_CAVFA (Uncharacterized protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4Q7J9_CAVFA) HSP 1 Score: 108 bits (270), Expect = 4.480e-25 Identity = 51/102 (50.00%), Postives = 69/102 (67.65%), Query Frame = 2 Query: 110 NPRQGQYSKRSQIGLYAGKDIRFGNTISFSHKKNQRTWKPNVQKKALYSEVLDEWIKFQLTTHALRCVDRAGGIDKYLLKTPDKWLNSAQGSNAKRKIQEVL 415 NP KRSQ GLY GK I++GN ISFSHKK +R WKPNVQ K +S +LD +K +TT+ +RC+D+AG D Y+LKT +K + S G++ K ++ VL Sbjct: 18 NPHYANLMKRSQRGLYGGKLIQYGNIISFSHKKTRRNWKPNVQAKTYFSHLLDAEVKVNVTTYTIRCIDKAGTFDNYILKTKNKDMASELGTDLKSVLKNVL 119 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1234.1926.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1234.1926.1 >prot_L-elsbetiae_contig1234.1926.1 ID=prot_L-elsbetiae_contig1234.1926.1|Name=mRNA_L-elsbetiae_contig1234.1926.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=162bp MSLLRRSALGFLQEFVRGCKNPRQGQYSKRSQIGLYAGKDIRFGNTISFSback to top mRNA from alignment at L-elsbetiae_contig1234:919..3357+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1234.1926.1 ID=mRNA_L-elsbetiae_contig1234.1926.1|Name=mRNA_L-elsbetiae_contig1234.1926.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2439bp|location=Sequence derived from alignment at L-elsbetiae_contig1234:919..3357+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1234:919..3357+ >mRNA_L-elsbetiae_contig1234.1926.1 ID=mRNA_L-elsbetiae_contig1234.1926.1|Name=mRNA_L-elsbetiae_contig1234.1926.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=972bp|location=Sequence derived from alignment at L-elsbetiae_contig1234:919..3357+ (Laminarionema elsbetiae ELsaHSoW15)back to top |