mRNA_L-elsbetiae_contig1233.1922.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1233.1922.1
Unique NamemRNA_L-elsbetiae_contig1233.1922.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1233.1922.1 vs. uniprot
Match: A0A835ZD32_9STRA (CMP/dCMP-type deaminase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD32_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 4.200e-7
Identity = 25/39 (64.10%), Postives = 28/39 (71.79%), Query Frame = 1 
Query:  403 VAAAHELRRSLTPPHQSLFRVVCILVYEDSAGKLHQITG 519
            V  AH LRRSL PPHQS FRVVC++ YED  G  H +TG
Sbjct:   29 VTMAHRLRRSLEPPHQSRFRVVCVIEYEDDGGATHVVTG 67
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1233.1922.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835ZD32_9STRA4.200e-764.10CMP/dCMP-type deaminase domain-containing protein ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1233contigL-elsbetiae_contig1233:24470..25873 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size540
Cds size519
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1233.1922.1prot_L-elsbetiae_contig1233.1922.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1233 24470..25852 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815429.737715-CDS-L-elsbetiae_contig1233:24469..249131622815429.737715-CDS-L-elsbetiae_contig1233:24469..24913Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1233 24470..24913 -
1691682894.096343-CDS-L-elsbetiae_contig1233:24469..249131691682894.096343-CDS-L-elsbetiae_contig1233:24469..24913Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1233 24470..24913 -
1622815429.7502618-CDS-L-elsbetiae_contig1233:25777..258521622815429.7502618-CDS-L-elsbetiae_contig1233:25777..25852Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1233 25778..25852 -
1691682894.1068633-CDS-L-elsbetiae_contig1233:25777..258521691682894.1068633-CDS-L-elsbetiae_contig1233:25777..25852Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1233 25778..25852 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815429.7640467-UTR-L-elsbetiae_contig1233:25852..258731622815429.7640467-UTR-L-elsbetiae_contig1233:25852..25873Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1233 25853..25873 -
1691682894.116118-UTR-L-elsbetiae_contig1233:25852..258731691682894.116118-UTR-L-elsbetiae_contig1233:25852..25873Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1233 25853..25873 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1233.1922.1

>prot_L-elsbetiae_contig1233.1922.1 ID=prot_L-elsbetiae_contig1233.1922.1|Name=mRNA_L-elsbetiae_contig1233.1922.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=173bp
MLQYLRCSALCRTGIPLRPRSTRKTMSGGRPLGSSFSSTATASSRGRGGG
GGGGGGRVHFSARRGPLPSTLAAASAAAVGGVALIACIAAAESSRPGSSV
LAAASTRAAVPAVVEKEQEEEGENATLVAAAHELRRSLTPPHQSLFRVVC
ILVYEDSAGKLHQITGEYVHKY*
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mRNA from alignment at L-elsbetiae_contig1233:24470..25873-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1233.1922.1 ID=mRNA_L-elsbetiae_contig1233.1922.1|Name=mRNA_L-elsbetiae_contig1233.1922.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1404bp|location=Sequence derived from alignment at L-elsbetiae_contig1233:24470..25873- (Laminarionema elsbetiae ELsaHSoW15)
GCGAGGGAGGCGGGTAACGCGATGTTACAGTACCTAAGATGCTCGGCTCT
GTGTCGGACCGGGATACCCCTGAGACCAAGGTCCACCAGAAAGACGGTGA
GCACACTGCTGCACGTGCGGCCTGTGTGGTCTCCAGCGATATTACTACCA
CAGCATCGCTCTCCGCTCTGTTCCCGTGTGCGCTTAGCTACTACTGTGGC
AGCGCTTGTATGCTGACGGATGAAGCAGTTGGCTGAGCGCGAAGTATATT
TACTGTGTATTTAGGCGCACACTTTTAACCTCGCCCAAAACCGTCGTCTG
TGACTGCTGTAACATCAGCAAGCTCTTTCCTTGTCTGTTGTCCCTCAGAT
ACAAAGCCAGAGACACTACTACTAACGTGTACAACCGCTGGCGTTGTGTT
TGCTTGCCTCTCTTACTGTAGACGATTGTCGGATTGGTGAATCGCGTCGT
CGACTGCACGCCTGTTCATGAATTTGAAATCAGGAAACACCCGCGCCGGG
AAATGCTGTCACTGCAAGCCGTTCCTGCTGCATAGATATGTCATCAATAC
TGAGCAGTGAAATGTTCATGAAGGCTGCGAACCGGGCACCCACGAGAGGG
GTTGGCGCTCGTCAGATGGAATTTCGCGTGGATTCTAAGCACCGGGCTGC
TACTTCCTGTGTGTCCTGTTGTTTGCCGGTTGCACGACTTCATTTCGTGC
CCGCACCAACCCAAAGCACGCCACTTTCAAAACATTTACGGATGTATATA
GACTAGACTACGTATGTATATAGACATATGTACAAGATTTTCCCAGTCAA
TCCACACATACACACAAACACACGAAAGAAAACCTCGCCTCTCCCAGTGC
GTGATATGATGTTACATACACAGATATAACATAAATACATACAGCAGTAG
CACGACATGGCGCCTGCTCGAAAATAAATCACTCCAATCCATCGAATTGA
TTGGTTCCAGATGTCCGGAGGCCGCCCGCTAGGGTCGTCCTTCTCTTCCA
CCGCCACGGCTTCTAGTCGAGGCCGCGGTGGCGGCGGTGGCGGCGGCGGT
GGGCGAGTTCATTTTTCGGCGCGACGCGGTCCTCTGCCGTCGACCCTGGC
AGCCGCTTCTGCTGCGGCAGTGGGCGGCGTTGCCCTCATCGCTTGCATAG
CGGCGGCGGAATCCTCCAGGCCAGGTTCTTCTGTGCTGGCGGCCGCATCG
ACCCGCGCTGCTGTACCCGCTGTCGTTGAGAAGGAGCAGGAGGAGGAGGG
GGAGAACGCCACGCTTGTTGCAGCAGCTCACGAGCTACGGCGGTCGCTGA
CCCCGCCGCACCAGAGCTTGTTCCGCGTGGTGTGCATTCTCGTGTACGAA
GACTCTGCTGGAAAGCTTCATCAGATCACCGGCGAGTATGTACATAAATA
TTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1233:24470..25873-

>mRNA_L-elsbetiae_contig1233.1922.1 ID=mRNA_L-elsbetiae_contig1233.1922.1|Name=mRNA_L-elsbetiae_contig1233.1922.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1038bp|location=Sequence derived from alignment at L-elsbetiae_contig1233:24470..25873- (Laminarionema elsbetiae ELsaHSoW15)
ATGTTACAGTACCTAAGATGCTCGGCTCTGTGTCGGACCGGGATACCCCT
GAGACCAAGGTCCACCAGAAAGACGATGTTACAGTACCTAAGATGCTCGG
CTCTGTGTCGGACCGGGATACCCCTGAGACCAAGGTCCACCAGAAAGACG
ATGTCCGGAGGCCGCCCGCTAGGGTCGTCCTTCTCTTCCACCGCCACGGC
TTCTAGTCGAGGCCGCGGTGGCGGCGGTGGCGGCGGCGGTGGGCGAGTTC
ATTTTTCGGCGCGACGCGGTCCTCTGCCGTCGACCCTGGCAGCCGCTTCT
GCTGCGGCAGTGGGCGGCGTTGCCCTCATCGCTTGCATAGCGGCGGCGGA
ATCCTCCAGGCCAGGTTCTTCTGTGCTGGCGGCCGCATCGACCCGCGCTG
CTGTACCCGCTGTCGTTGAGAAGGAGCAGGAGGAGGAGGGGGAGAACGCC
ACGCTTGTTGCAGCAGCTCACGAGCTACGGCGGTCGCTGACCCCGCCGCA
CCAGAGCTTGTTCCGCGTGGTGTGCATTCTCGTGTACGAAGACTCTGCTG
GAAAGCTTCATCAGATCACCGGCGAGTATGTACATAAATATTAGATGTCC
GGAGGCCGCCCGCTAGGGTCGTCCTTCTCTTCCACCGCCACGGCTTCTAG
TCGAGGCCGCGGTGGCGGCGGTGGCGGCGGCGGTGGGCGAGTTCATTTTT
CGGCGCGACGCGGTCCTCTGCCGTCGACCCTGGCAGCCGCTTCTGCTGCG
GCAGTGGGCGGCGTTGCCCTCATCGCTTGCATAGCGGCGGCGGAATCCTC
CAGGCCAGGTTCTTCTGTGCTGGCGGCCGCATCGACCCGCGCTGCTGTAC
CCGCTGTCGTTGAGAAGGAGCAGGAGGAGGAGGGGGAGAACGCCACGCTT
GTTGCAGCAGCTCACGAGCTACGGCGGTCGCTGACCCCGCCGCACCAGAG
CTTGTTCCGCGTGGTGTGCATTCTCGTGTACGAAGACTCTGCTGGAAAGC
TTCATCAGATCACCGGCGAGTATGTACATAAATATTAG
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