mRNA_L-elsbetiae_contig12321.1918.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12321.1918.1
Unique NamemRNA_L-elsbetiae_contig12321.1918.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig12321.1918.1 vs. uniprot
Match: D7FSD6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSD6_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 5.010e-11
Identity = 33/50 (66.00%), Postives = 40/50 (80.00%), Query Frame = 2 
Query:   23 EAAEAAAARTGASNGRTSGWDLSGKDDTGIRPQQRKTRLSYLLAAEGDND 172
            EAA AAAA TGAS+GR SGWDLSG  DTG+RPQ++ TRLSYL+ ++   D
Sbjct:  110 EAAAAAAALTGASSGRKSGWDLSGGGDTGVRPQEKHTRLSYLVGSDSSGD 159
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BLAST of mRNA_L-elsbetiae_contig12321.1918.1 vs. uniprot
Match: A0A6H5JS13_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS13_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 3.350e-10
Identity = 33/51 (64.71%), Postives = 38/51 (74.51%), Query Frame = 2 
Query:   44 ARTGASNGRTSGWDLSGKDDTGIRPQQRKTRLSYLLAAEGDNDDATSGGGG 196
            A TGAS+GR SGWDLSG+ DTG+RPQ + TRLSYL+  E   DD  SG GG
Sbjct:  132 ALTGASSGRKSGWDLSGEGDTGVRPQAKHTRLSYLVEPESGGDDRESGRGG 182
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12321.1918.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FSD6_ECTSI5.010e-1166.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JS13_9PHAE3.350e-1064.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12321contigL-elsbetiae_contig12321:3292..3535 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-25_001020.1
Exons1
Model size244
Cds size234
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815429.5718055-UTR-L-elsbetiae_contig12321:3291..33011622815429.5718055-UTR-L-elsbetiae_contig12321:3291..3301Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12321 3292..3301 +
1691682894.003709-UTR-L-elsbetiae_contig12321:3291..33011691682894.003709-UTR-L-elsbetiae_contig12321:3291..3301Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12321 3292..3301 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815429.582076-CDS-L-elsbetiae_contig12321:3301..35351622815429.582076-CDS-L-elsbetiae_contig12321:3301..3535Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12321 3302..3535 +
1691682894.0157893-CDS-L-elsbetiae_contig12321:3301..35351691682894.0157893-CDS-L-elsbetiae_contig12321:3301..3535Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12321 3302..3535 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12321.1918.1prot_L-elsbetiae_contig12321.1918.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12321 3302..3535 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12321.1918.1

>prot_L-elsbetiae_contig12321.1918.1 ID=prot_L-elsbetiae_contig12321.1918.1|Name=mRNA_L-elsbetiae_contig12321.1918.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=78bp
MKAAEAAEAAAARTGASNGRTSGWDLSGKDDTGIRPQQRKTRLSYLLAAE
GDNDDATSGGGGDGRGDDGRKQQDGSAD
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mRNA from alignment at L-elsbetiae_contig12321:3292..3535+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12321.1918.1 ID=mRNA_L-elsbetiae_contig12321.1918.1|Name=mRNA_L-elsbetiae_contig12321.1918.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=244bp|location=Sequence derived from alignment at L-elsbetiae_contig12321:3292..3535+ (Laminarionema elsbetiae ELsaHSoW15)
AGTGACGGCTATGAAGGCGGCCGAGGCCGCCGAGGCCGCCGCAGCTCGGA
CGGGGGCCTCGAACGGCCGCACGTCGGGGTGGGACCTCTCCGGCAAGGAC
GACACCGGGATCAGACCGCAGCAAAGAAAGACGCGGCTGTCGTACCTGCT
AGCCGCCGAGGGCGACAACGACGACGCCACCAGTGGTGGTGGTGGTGATG
GTAGAGGTGACGACGGCAGAAAGCAGCAAGATGGAAGCGCCGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12321:3292..3535+

>mRNA_L-elsbetiae_contig12321.1918.1 ID=mRNA_L-elsbetiae_contig12321.1918.1|Name=mRNA_L-elsbetiae_contig12321.1918.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=468bp|location=Sequence derived from alignment at L-elsbetiae_contig12321:3292..3535+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGGCGGCCGAGGCCGCCGAGGCCGCCGCAGCTCGGACGGGGGCCTC
GAACGGCCGCACGTCGGGGTGGGACCTCTCCGGCAAGGACGACACCGGGA
TCAGACCGCAGCAAAGAAAGACGCGGCTGTCGTACCTGCTAGCCGCCGAG
GGCGACAACGACGACGCCACCAGTGGTGGTGGTGGTGATGGTAGAGGTGA
CGACGGCAGAAAGCAGCAAGATGGAAGCGCCGACATGAAGGCGGCCGAGG
CCGCCGAGGCCGCCGCAGCTCGGACGGGGGCCTCGAACGGCCGCACGTCG
GGGTGGGACCTCTCCGGCAAGGACGACACCGGGATCAGACCGCAGCAAAG
AAAGACGCGGCTGTCGTACCTGCTAGCCGCCGAGGGCGACAACGACGACG
CCACCAGTGGTGGTGGTGGTGATGGTAGAGGTGACGACGGCAGAAAGCAG
CAAGATGGAAGCGCCGAC
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