mRNA_L-elsbetiae_contig12318.1913.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12318.1913.1
Unique NamemRNA_L-elsbetiae_contig12318.1913.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig12318.1913.1 vs. uniprot
Match: D7FJJ2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJJ2_ECTSI)

HSP 1 Score: 309 bits (791), Expect = 2.300e-93
Identity = 148/187 (79.14%), Postives = 167/187 (89.30%), Query Frame = 1
Query:  109 LVDTPQICWHGGEAGKAAPILSLDTHPLVLDQPSGAAGARFILATAGTDAEVRLWVVNQPTREDAGVWEQPGLSGRMQSFVSSLGGHERGVNVVRFSPDGLSLASASDGGTVVIWSVETLAAWSTLSSDRETKKTILRGATADIYDMSWSPESRYLACGSIDRRAHIWEVTTKRSIATLEDHANYVQ 669
            LVDTPQI WHGGEAGK APILSLDTHPL LD   G  G+R +LATAGTDAEVRLW+VN+PT+EDA  WEQ G+S R+Q+FV+SLGGH+RGVN VRFSPDGLSLASASDGGTVVIWSVE +AAWST+ SDR+T+K ILRGAT DIYDM+WSP+S+Y+ CGSIDRRAH+WEV TKRSIATLEDHANYVQ
Sbjct:    3 LVDTPQIVWHGGEAGKNAPILSLDTHPLALD--GGHQGSRVVLATAGTDAEVRLWIVNRPTQEDAKNWEQAGVSSRLQTFVASLGGHQRGVNAVRFSPDGLSLASASDGGTVVIWSVEDVAAWSTIKSDRDTRKNILRGATEDIYDMAWSPDSKYITCGSIDRRAHVWEVATKRSIATLEDHANYVQ 187          
BLAST of mRNA_L-elsbetiae_contig12318.1913.1 vs. uniprot
Match: A0A836CAR4_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAR4_9STRA)

HSP 1 Score: 142 bits (359), Expect = 3.060e-32
Identity = 82/205 (40.00%), Postives = 113/205 (55.12%), Query Frame = 1
Query:  106 MLVDTPQICWHGGEAGKAAPILSLDTHPLVLDQPS---------GAAGA-----RFILATAGTDAEVRLWVVNQPTREDAGVWEQPG---LSGRMQSFVSSLGGHERGVNVVRFSPDGLSLASASDGGTVVIWSVETLAAWSTLSSDRETKKTILRGATADIYDMSWSPESRYLACGSIDRRAHIWEVTTKRSIATLEDHANYVQ 669
            MLVDTPQI WH GEA K  PI S D HP  L Q +          A+ A      +++ATAG   EV L+ V  P   D   W+ P     S R+Q F+++L GH+  VNV RFSP GL LA+A D GTV++WSV +   W T     +  +  L  ++  +YD++W+P SR LA   ID+   +W+   ++  AT +DH  +VQ
Sbjct:    1 MLVDTPQIIWHAGEANKNVPIYSCDIHPSPLPQSTDRRSKHGDPAASDATDNATEYVMATAGIANEVHLFAVKAPGLADPR-WDVPDGGTASVRLQRFLTALSGHDCVVNVARFSPHGLCLATAGDNGTVIVWSVASAGDWGT--EGLKPSRYSLNASSMGVYDLAWAPGSRLLASVGIDKTMRVWDCVARQCAATAQDHKQFVQ 202          
BLAST of mRNA_L-elsbetiae_contig12318.1913.1 vs. uniprot
Match: K8Z5F2_NANGC (Transducin wd40 domain-containing protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z5F2_NANGC)

HSP 1 Score: 138 bits (347), Expect = 2.120e-31
Identity = 75/193 (38.86%), Postives = 108/193 (55.96%), Query Frame = 1
Query:  106 MLVDTPQICWHGGEAGKAAPILSLDTHPLVLDQPSGAAGARFILATAGTDAEVRLWVVNQPTREDAGVWEQPGLSGRMQSFVSSLGGHERGVNVVRFSPDGLSLASASDGGTVVIWSV---ETLAAWSTLSSDRETKKTILRGATADIYDMSWSPESRYLACGSIDRRAHIWEVTTKRS--IATLEDHANYVQ 669
            M + TPQI WHGGEAGK  P+LS D HP              +LAT G DAEVRLW+++    E++          + Q ++ +   H+R VN VRFSPDG +LA+ASDGG + ++ +        W      R     ++R   +DIYD++WSP SR L   S+D +  +W+VT ++S  ++T   H+NYVQ
Sbjct:    1 MKITTPQITWHGGEAGKNDPVLSADVHPC------------GVLATGGADAEVRLWLLHLDENEES----------KFQDYLYNFENHQRSVNSVRFSPDGRALATASDGGVIFVYLLPPGRPTRFWRRPMCQRMVLCRLVRTTQSDIYDLAWSPSSRELCSVSVDSKVAVWDVTGEKSPLLSTFTSHSNYVQ 171          
BLAST of mRNA_L-elsbetiae_contig12318.1913.1 vs. uniprot
Match: A0A024TEX7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TEX7_9STRA)

HSP 1 Score: 127 bits (318), Expect = 1.250e-27
Identity = 85/229 (37.12%), Postives = 120/229 (52.40%), Query Frame = 1
Query:   91 TKLRDMLVDTPQICWHGGEAGKAAPILSLD--------------------THPLVLDQPSGAAGAR-------FILATAGTDAEVRLWVVNQPTREDAGVWEQPGLSGRMQSFVSSLGGHERGVNVVRFSPDGLSLASASDGGTVVIWS-----VETLAA---WSTLSSDRETKKTILR-GATADIYDMSWSPESRYLACGSIDRRAHIWEVTTKRSIATLEDHANYVQ 669
            T+   M VDTP+I WH G  G    +L++D                    + P+  D PS ++ +         +LATAG+D EVRLW++  PT +   V            FV +L  H+R VN VRFSPDG  LASASD  T+V+WS     V+  A+   WST++S+ +  + +L  G   DI D+SWSP+S+YL   S+D  A IW V T + I   +DH+ +VQ
Sbjct:   31 TRGGGMRVDTPEIRWHYGPTGLNEAVLTIDYLRRPILPSAATGGEIDTMSSTPVAADVPSSSSRSTPQQTSLPTVLATAGSDKEVRLWIM--PTDDPLPV------------FVYTLSAHDRSVNCVRFSPDGSILASASDDSTIVLWSRPKHLVDDDASSWDWSTVASNSDVGRVLLACGHKGDITDLSWSPDSQYLCSVSVDNTASIWHVPTAKLIEKRKDHSQFVQ 245          
BLAST of mRNA_L-elsbetiae_contig12318.1913.1 vs. uniprot
Match: A0A024TCY2_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TCY2_9STRA)

HSP 1 Score: 127 bits (318), Expect = 3.560e-27
Identity = 85/229 (37.12%), Postives = 120/229 (52.40%), Query Frame = 1
Query:   91 TKLRDMLVDTPQICWHGGEAGKAAPILSLD--------------------THPLVLDQPSGAAGAR-------FILATAGTDAEVRLWVVNQPTREDAGVWEQPGLSGRMQSFVSSLGGHERGVNVVRFSPDGLSLASASDGGTVVIWS-----VETLAA---WSTLSSDRETKKTILR-GATADIYDMSWSPESRYLACGSIDRRAHIWEVTTKRSIATLEDHANYVQ 669
            T+   M VDTP+I WH G  G    +L++D                    + P+  D PS ++ +         +LATAG+D EVRLW++  PT +   V            FV +L  H+R VN VRFSPDG  LASASD  T+V+WS     V+  A+   WST++S+ +  + +L  G   DI D+SWSP+S+YL   S+D  A IW V T + I   +DH+ +VQ
Sbjct:   31 TRGGGMRVDTPEIRWHYGPTGLNEAVLTIDYLRRPILPSAATGGEIDTMSSTPVAADVPSSSSRSTPQQTSLPTVLATAGSDKEVRLWIM--PTDDPLPV------------FVYTLSAHDRSVNCVRFSPDGSILASASDDSTIVLWSRPKHLVDDDASSWDWSTVASNSDVGRVLLACGHKGDITDLSWSPDSQYLCSVSVDNTASIWHVPTAKLIEKRKDHSQFVQ 245          
BLAST of mRNA_L-elsbetiae_contig12318.1913.1 vs. uniprot
Match: A0A3R6YJP8_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6YJP8_9STRA)

HSP 1 Score: 121 bits (304), Expect = 2.720e-25
Identity = 82/219 (37.44%), Postives = 114/219 (52.05%), Query Frame = 1
Query:  106 MLVDTPQICWHGGEAGKAAPILSLD-----------THPLVLDQPSGA------AGARF------ILATAGTDAEVRLWVVNQPTREDAGVWEQPGLSGRMQSFVSSLGGHERGVNVVRFSPDGLSLASASDGGTVVIW-------SVETLAAWSTLSSDRETKKTILR-GATADIYDMSWSPESRYLACGSIDRRAHIWEVTTKRSIATLEDHANYVQ 669
            M VDTP+I WH G  G    +LS+D           +  LV    SG+      AG+        +LAT G+D EVRLW++  P  +   V            FV +L  H+R VN VRFSPDG  LASASD  T+V+W       + + L  WST++S+ +  + +L  G   DI D+SWSP+S+YL   S+D  A IW V T + +   +DH+ +VQ
Sbjct:    1 MKVDTPEIRWHYGPTGLNEAVLSIDYLRRPSSSPDASGELVDTSSSGSVNGTASAGSATPPVLPSVLATGGSDKEVRLWIM--PVDDPLPV------------FVYTLSAHDRSVNCVRFSPDGSILASASDDSTIVLWMRPKHVSNDDALWDWSTVASNSDVGRVLLACGHKGDITDLSWSPDSQYLCSVSVDNTASIWHVPTAKLVEKRKDHSQFVQ 205          
BLAST of mRNA_L-elsbetiae_contig12318.1913.1 vs. uniprot
Match: K3XC86_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XC86_GLOUD)

HSP 1 Score: 118 bits (296), Expect = 1.780e-24
Identity = 72/199 (36.18%), Postives = 102/199 (51.26%), Query Frame = 1
Query:   91 TKLRDMLVDTPQICWHGGEAGKAAPILSLD-THPLVLDQPSGAAGARFILATAGTDAEVRLWVVNQPTREDAGVWEQPGLSGRMQSFVSSLGGHERGVNVVRFSPDGLSLASASDGGTVVIWSVETLAA----WSTLSSDRETKKTILR-GATADIYDMSWSPESRYLACGSIDRRAHIWEVTTKRSIATLEDHANYVQ 669
            TK   +   TP+I WH G  G    +LS+D  H         A  A  ILAT G D E++LW V+   ++  G+            F+ SL GH+R VN VRFSP+G+ LASASD  T+++W+    AA    W  ++S  +  +T+L  G   DI D++WSP+S +L   S+D  + IW           +DH  YVQ
Sbjct:   41 TKPTLLTALTPEIRWHCGPTGLNEAVLSIDFLHANGDKSKEDATKAPTILATGGADKEIKLWRVSYGLKDHTGL-----------EFIFSLSGHDRSVNCVRFSPNGVFLASASDDSTIILWTKPKTAAEDWAWDKITSFSDVSRTLLACGHKGDITDLAWSPDSAFLCSTSVDNTSVIWNAEKGEVEERRKDHTQYVQ 228          
BLAST of mRNA_L-elsbetiae_contig12318.1913.1 vs. uniprot
Match: A0A2D4BJK8_PYTIN (Chromatin assembly factor 1 subunit B-like protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BJK8_PYTIN)

HSP 1 Score: 118 bits (296), Expect = 1.910e-24
Identity = 74/193 (38.34%), Postives = 97/193 (50.26%), Query Frame = 1
Query:  106 MLVDTPQICWHGGEAGKAAPILSLDTHPLVLDQPSGAAGARFILATAGTDAEVRLWVVNQPTREDAGVWEQPGLSGRMQSFVSSLGGHERGVNVVRFSPDGLSLASASDGGTVVIWSVETLAA----WSTLSSDRETKKTILR-GATADIYDMSWSPESRYLACGSIDRRAHIWEVTTKRSIATLEDHANYVQ 669
            + V TP+I WH G  G    +LSLD          G      ILAT G D E++LW V    +E  G+            F+ SL GHER VN VRFSPDGL LASASD  +V IW+    A     W  ++S  +  +T+L  G   DI D++WSP+S +L   S+D  + IW +         +DH  YVQ
Sbjct:   26 VRVTTPEIRWHCGPTGLNXAVLSLD-----FLHAHGDGADHAILATGGADKEIKLWRVRPDMKETEGL-----------EFIFSLTGHERSVNCVRFSPDGLFLASASDDMSVTIWTKPKTAGDDWRWDXITSFSDVTRTLLSCGHKGDITDLAWSPDSAFLCSVSVDNSSVIWNIEKGEVQERRKDHTQYVQ 202          
BLAST of mRNA_L-elsbetiae_contig12318.1913.1 vs. uniprot
Match: A0A0P1B6K6_PLAHL (Chromatin assembly complex 1 subunit b cac2 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B6K6_PLAHL)

HSP 1 Score: 117 bits (293), Expect = 3.700e-24
Identity = 75/196 (38.27%), Postives = 104/196 (53.06%), Query Frame = 1
Query:   97 LRDMLVDTPQICWHGGEAGKAAPILSLDTHPLVLDQPSGAAGARFILATAGTDAEVRLWVVNQPTREDAGVWEQPGLSGRMQSFVSSLGGHERGVNVVRFSPDGLSLASASDGGTVVIWSVETLAA----WSTLSSDRETKKTILR-GATADIYDMSWSPESRYLACGSIDRRAHIWEVTTKRSIATLEDHANYVQ 669
            +  + V TP+I  H G  G    +LSLD   L  +     +  + +LAT G D E++LW V +    +A    Q  ++     FV SL GH+R VN VRFSP+G  LASASD  ++++WS    A     W  +SS  + K+ IL  G   DI D+SWSP+S +LA  S+D R  IW+V         +DH  YVQ
Sbjct:    1 MPSVRVATPEIRLHCGPTGLNEAVLSLDF--LWPNNEVATSSGKSLLATGGADKEIKLWRVGEKEEPEA----QDTIA---LEFVFSLSGHDRSVNCVRFSPNGAYLASASDDTSIILWSKPKTAGDDWHWDQISSLSDVKRNILSLGHKGDITDLSWSPDSAFLASTSVDNRCVIWDVEKGDVAERRKDHTQYVQ 187          
BLAST of mRNA_L-elsbetiae_contig12318.1913.1 vs. uniprot
Match: A0A484E1D2_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E1D2_BRELC)

HSP 1 Score: 116 bits (290), Expect = 8.510e-24
Identity = 77/195 (39.49%), Postives = 103/195 (52.82%), Query Frame = 1
Query:  106 MLVDTPQICWHGGEAGKAAPILSLDTHPLVLDQPSGAAGA--RFILATAGTDAEVRLWVVNQPTREDAGVWEQPGLSGRMQSFVSSLGGHERGVNVVRFSPDGLSLASASDGGTVVIWSVETLAA----WSTLSSDRETKKTILR-GATADIYDMSWSPESRYLACGSIDRRAHIWEVTTKRSIATLEDHANYVQ 669
            + V+TP+I  H G  G    +LSLD     L Q +G      + ILAT G D E++LW +     ED    E   L      F+ SL GH+R +N VRFSP+G  LASASD  ++++W+    A     W  +SS     +TIL  G   DI D+SWSP+S +LA  S+D R  IW+V         +DHA YVQ
Sbjct:    8 VRVETPEIRLHCGPTGLNEAVLSLD----FLIQKAGKISLTDKPILATGGADKEIKLWRIG--CLEDTHNKEDVALE-----FIFSLSGHDRSINCVRFSPNGTYLASASDDTSIILWTKPKTAGDDWRWGQISSLSAVDRTILSLGHRGDITDLSWSPDSAFLASSSVDNRCVIWDVEKGEVAERRKDHAQYVQ 191          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12318.1913.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJJ2_ECTSI2.300e-9379.14Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CAR4_9STRA3.060e-3240.00WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
K8Z5F2_NANGC2.120e-3138.86Transducin wd40 domain-containing protein n=1 Tax=... [more]
A0A024TEX7_9STRA1.250e-2737.12Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A024TCY2_9STRA3.560e-2737.12Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
A0A3R6YJP8_9STRA2.720e-2537.44Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
K3XC86_GLOUD1.780e-2436.18Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A2D4BJK8_PYTIN1.910e-2438.34Chromatin assembly factor 1 subunit B-like protein... [more]
A0A0P1B6K6_PLAHL3.700e-2438.27Chromatin assembly complex 1 subunit b cac2 n=1 Ta... [more]
A0A484E1D2_BRELC8.510e-2439.49Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12318contigL-elsbetiae_contig12318:57..3643 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score310.8
Seed ortholog evalue4.7e-82
Seed eggNOG ortholog2880.D7FJJ2
Preferred nameCHAF1B
KEGG koko:K10751
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000278,GO:0000724,GO:0000725,GO:0000775,GO:0000785,GO:0000790,GO:0003674,GO:0003682,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006302,GO:0006310,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006335,GO:0006338,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007275,GO:0008150,GO:0008152,GO:0008283,GO:0008593,GO:0009058,GO:0009059,GO:0009555,GO:0009653,GO:0009888,GO:0009933,GO:0009966,GO:0009967,GO:0009987,GO:0010026,GO:0010646,GO:0010647,GO:0016043,GO:0022402,GO:0022607,GO:0023051,GO:0023056,GO:0030154,GO:0031297,GO:0031497,GO:0031507,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033186,GO:0033260,GO:0033554,GO:0034622,GO:0034641,GO:0034645,GO:0034723,GO:0034728,GO:0042393,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0043933,GO:0043954,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044786,GO:0045005,GO:0045747,GO:0046483,GO:0048229,GO:0048366,GO:0048367,GO:0048507,GO:0048518,GO:0048522,GO:0048532,GO:0048583,GO:0048584,GO:0048731,GO:0048827,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051082,GO:0051276,GO:0051716,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070827,GO:0070828,GO:0070829,GO:0071103,GO:0071704,GO:0071824,GO:0071840,GO:0090304,GO:0090558,GO:0098687,GO:0099402,GO:1901360,GO:1901576,GO:1902298,GO:1902969,GO:1903047,GO:1990426,GO:1990505
EggNOG free text desc.nucleosome assembly
EggNOG OGsKOG1009@1,KOG1009@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons2
Model size1682
Cds size624
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12318.1913.1prot_L-elsbetiae_contig12318.1913.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12318 1010..3538 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815429.0328975-UTR-L-elsbetiae_contig12318:56..10091622815429.0328975-UTR-L-elsbetiae_contig12318:56..1009Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12318 57..1009 -
1691682893.712322-UTR-L-elsbetiae_contig12318:56..10091691682893.712322-UTR-L-elsbetiae_contig12318:56..1009Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12318 57..1009 -
1622815429.0632246-UTR-L-elsbetiae_contig12318:3538..36431622815429.0632246-UTR-L-elsbetiae_contig12318:3538..3643Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12318 3539..3643 -
1691682893.7402775-UTR-L-elsbetiae_contig12318:3538..36431691682893.7402775-UTR-L-elsbetiae_contig12318:3538..3643Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12318 3539..3643 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815429.0422041-CDS-L-elsbetiae_contig12318:1009..10691622815429.0422041-CDS-L-elsbetiae_contig12318:1009..1069Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12318 1010..1069 -
1691682893.72238-CDS-L-elsbetiae_contig12318:1009..10691691682893.72238-CDS-L-elsbetiae_contig12318:1009..1069Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12318 1010..1069 -
1622815429.0520563-CDS-L-elsbetiae_contig12318:2974..35381622815429.0520563-CDS-L-elsbetiae_contig12318:2974..3538Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12318 2975..3538 -
1691682893.7321823-CDS-L-elsbetiae_contig12318:2974..35381691682893.7321823-CDS-L-elsbetiae_contig12318:2974..3538Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12318 2975..3538 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12318.1913.1

>prot_L-elsbetiae_contig12318.1913.1 ID=prot_L-elsbetiae_contig12318.1913.1|Name=mRNA_L-elsbetiae_contig12318.1913.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=208bp
MLVDTPQICWHGGEAGKAAPILSLDTHPLVLDQPSGAAGARFILATAGTD
AEVRLWVVNQPTREDAGVWEQPGLSGRMQSFVSSLGGHERGVNVVRFSPD
GLSLASASDGGTVVIWSVETLAAWSTLSSDRETKKTILRGATADIYDMSW
SPESRYLACGSIDRRAHIWEVTTKRSIATLEDHANYVQNPRMLSGFSSSS
GELSSST*
back to top

mRNA from alignment at L-elsbetiae_contig12318:57..3643-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12318.1913.1 ID=mRNA_L-elsbetiae_contig12318.1913.1|Name=mRNA_L-elsbetiae_contig12318.1913.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3587bp|location=Sequence derived from alignment at L-elsbetiae_contig12318:57..3643- (Laminarionema elsbetiae ELsaHSoW15)
GGGGGTTAAGATTTGAATTTTGCACTTCACGGAGTCCCGGAAACTAGCTG ACAGGCCTAGACAGGCCCACCCAGTCACCCAGTCCCCAACACAAAGCTTC GCGACATGTTAGTCGACACCCCCCAGATATGTTGGCACGGAGGAGAAGCG GGAAAGGCGGCGCCTATTCTCTCGCTCGATACCCATCCCTTGGTGCTAGA TCAACCAAGCGGCGCGGCGGGCGCCCGCTTCATTCTGGCCACGGCCGGCA CGGATGCCGAGGTGAGACTCTGGGTAGTCAACCAACCTACACGGGAAGAT GCAGGTGTCTGGGAGCAGCCGGGCTTGTCGGGTCGAATGCAGTCATTCGT TTCTTCTCTTGGGGGACATGAAAGGGGCGTCAACGTCGTAAGGTTTAGCC CCGACGGACTGAGCTTGGCGAGCGCGAGCGACGGAGGTACGGTCGTGATC TGGAGCGTGGAGACACTGGCTGCGTGGAGCACCCTCAGTTCAGACCGTGA AACAAAAAAGACCATCCTGAGGGGGGCAACAGCGGACATCTACGATATGT CTTGGTCTCCGGAGTCTAGATACCTCGCGTGCGGCTCAATCGATCGCCGC GCCCATATTTGGGAAGTGACAACCAAGCGCTCCATCGCGACTCTGGAGGA TCACGCAAACTACGTGCAGGTGCGATTATTTGCGGGTGTTTTGACAGACA GCAGGGGAGGAGCGGGGGAGGGGAAAACGGAGAGATGGAGGTAGAGAGAG AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAA GGAGAGAGAGACATTCTCGTGGTGTCTGTAAAGCCTCAGTTAGTAATATC TTGAGGTTGTACTCGTCTTTGTCCCACAGGTTTTCAGGCGGTTTCACTCT GTCTTGAAGATCTGCTCATACACACATGTCGAACCTCCCACAAAATGACT TTACTTACTCCTAATTTTTTCTTGTCCTCAAAAATACGATCCCACGCAGC CCCCCCTATTGATATAACACGCCGGAGAACGCAGTTATTTCACCAAAGCT GGCTGTGATGTTATCCCAAAATCACCAGCCAATAGGTTGTTTCGGTTGTT AAAATACCCGTCACCAACACCGGGCCAAAGGCCAAAGTGGCAGATCGATT GAACAAACACAGAAAGTGGCGCTACCGTCTAAAGTTGCTCAATCGGACGC GGCGAAGGAGCTTTTCAGATGATTTTGGAGGCAGACAAGCGAGCGTGCTT TGCCGCTTATCTTGATCAGAGAGAGGCGACGTCGGTTTGAGCGCCCTAGA TCTGATCCCTAAATCGCCAGCCCGGTGTCCATCACATACTCACATATCTG TACGGTCGCCGGGTTTAACGCGATTTGGTGCTCTCCTGGCGCTAGCGATT GAAATTGCCTCCCAAGATGCGAAATTGGGCTGAAAAAAACAGCAGCAGTT GCTGTGTGGCACCGGTCACTCAGCAGCTCTCCTCTTCTTAAGATAAGTTA CGTAGTACAGAGTCCTTGCGGGCGTAGGGAGTAGGCATCCTGGAATCTCC TGCTCCTTTCGCTGCGATCGGTTGTGTATGTGAGGAGCATCAGCAGTCAC GAAGTACATGACCGCGTGGGATCAGAGCAACACATATCGGGGAGAGGACA CGAAAACAAAAACCCCGCCCAATTCAACGCTTCGCTTCTTGAAGACATTT TCTTTTTTTGTGAGAGGTGCAACACGCGTGCTACCACTTTCTGCATCTAT CTCCAAGAAAAATCTGCTGCTTTATTCAGGCGAACATGCAACCCTCACCG AGCCTTTTGCCTACATTTACCCAATACGCGAATCCCACAACGCTCAAACT CTGGTTGTTTCGCGGACATCAACTGCTACACACGCCGAACCCCTCACCTG GGGGTCCAAACGCCAAAGATTTTCTGTATCTCGTCACATTAAGCAACACT ATTAGGCAACCATGACTGCCGCTGATTTATTTTACTCCACACCACTACTT GTGGGTGGTCTGTGGTAGAATTTCTCAGAAGGGCTATGTATATTGTTTGA AATAGGAGGCCCTTTGTTTCCCTGACATGCAGATGTATTCAGCAGAGTAG GTAGCCCAATTTAGTGGGGCCGCATAAGGGCAAACGGCCAATATGCCACT ACTCAGGGCAGTGCCACTATCCTTTACTTGAACCGCCAGCCGTTTATTCG ATGTACATACTCACAATCGCGTTGTAGGCGAGGGGTGTGTGTTGTACATG GCTGCAGCAAGCACTACATTGACTCTTCAAAACGAAACATAACAACTGTG TATCAGAATCCACATGAAAACGCCCCGATCTATACTCAGTACAGCAGTCA CACAAAAGTGCAGATTTTGTGTCTGTATCCTGGGATGGTGTGGAGGGTTA GTGTATCTCTAATTAGCGGCCTGTGCGGCGAGGAACCCCATATTTATCTG GCATGAAAAATGTCCGGCCTCGTAAATGACTGCGACTCTGCCTTCTGTTC TTAATAAAGGACCAAAAAGTGCAGACAGTTCCGCGACGGCGGCACCTTCA TCCCCCCATCCCCCGCACTCCCAGAATCCTCGCATGCTGTCCGGCTTCAG CTCGTCTTCAGGAGAGCTGTCCTCTTCGACATGAACACATGGGGCTTTTC CATTAAACCCCCTTTGCGTCGTCAGCCAGAGCTTCTACGAAGAATTTGCT TTGCTGCTCCAAACCGGCCCATTTCTCCACCGCCTTGATGGCGACAGGGT GGGCAGGTTTGCGGGAAGTGTTTTCAAGACTCATCATAACATCGGACAAC ACTCTGCGTCCTGCACGCCCCCGGCCCCGTCGCCGCGTCCGGCACGCCGA CGCTAAGCGCATTGAGCGCGTCCGCGAGCTCTGCCGCTTGGCGAGGCATG GGGTGCAGACGTGGTGTAGCTCGCCCTCTTCTACTTGTTCACAGTAAATG CTATGAAGTCGGCTACCACAGTCAGAGCGGCATCCGTGCCCGTCCTTCTC TCCCAGTGGTGGGTTATTTTCAAGGGCTTGCATGGTGCCGAAGGCACCAT GGTAGTGGTATGGTAAGGTTTTGCTCACCGCAGGTGGAAGCATTTTTAGT CCCATATTACGTGGGATGGGATACCACGGTCATTTTGTTGCCGCTGCCAC TTCCAAAGTGGAAATGGAACCACTTGCGTTTTACGTGGGATGGAAATGGG ATGGGAAGTGGGAGTGTATTACAATGTGGGAACCACATGGGAATCCACAA AAATCGAGACGGGATGGGATGGGACTGTTGTGTCATATGTCATATGGGGG ATGGCGGGACGCCGCCGGGAAATGTGGGATTTAACATGGGATCTAGCATG GGACAACACCGGGTTTAGCAACGATGCCTTTGCTGGGATCAGCGCGGACG TTCTTCATCAAGACCGCAGGTTATGTCGCGCGCTGGAACCTTGTCCACCG CGGGAAGTCGAATCTTGACGATGCACTTGACGTTGCTGCCGTCGTTCGTC GGCGGCATGAACTCTACAACATGCTTCCAAATCGCAGACGTCTGCTTCTT TTTACTTGTCCCAGCACCGACCGGCTGTCGCGCAACG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig12318:57..3643-

>mRNA_L-elsbetiae_contig12318.1913.1 ID=mRNA_L-elsbetiae_contig12318.1913.1|Name=mRNA_L-elsbetiae_contig12318.1913.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1248bp|location=Sequence derived from alignment at L-elsbetiae_contig12318:57..3643- (Laminarionema elsbetiae ELsaHSoW15)
ATGTTAGTCGACACCCCCCAGATATGTTGGCACGGAGGAGAAGCGGGAAA
GGCGGCGCCTATTCTCTCGCTCGATACCCATCCCTTGGTGCTAGATCAAC
CAAGCGGCGCGGCGGGCGCCCGCTTCATTCTGGCCACGGCCGGCACGGAT
GCCGAGGTGAGACTCTGGGTAGTCAACCAACCTACACGGGAAGATGCAGG
TGTCTGGGAGCAGCCGGGCTTGTCGGGTCGAATGCAGTCATTCGTTTCTT
CTCTTGGGGGACATGAAAGGGGCGTCAACGTCGTAAGGTTTAGCCCCGAC
GGACTGAGCTTGGCGAGCGCGAGCGACGGAGGTACGGTCGTGATCTGGAG
CGTGGAGACACTGGCTGCGTGGAGCACCCTCAGTTCAGACCGTGAAACAA
AAAAGACCATCCTGAGGGGGGCAACAGCGGACATCTACGATATGTCTTGG
TCTCCGGAGTCTAGATACCTCGCGTGCGGCTCAATCGATCGCCGCGCCCA
TATTTGGGAAGTGACAACCAAGCGCTCCATCGCGACTCTGGAGGATCACG
CAAACTACGTGCAGATGTTAGTCGACACCCCCCAGATATGTTGGCACGGA
GGAGAAGCGGGAAAGGCGGCGCCTATTCTCTCGCTCGATACCCATCCCTT
GGTGCTAGATCAACCAAGCGGCGCGGCGGGCGCCCGCTTCATTCTGGCCA
CGGCCGGCACGGATGCCGAGGTGAGACTCTGGGTAGTCAACCAACCTACA
CGGGAAGATGCAGGTGTCTGGGAGCAGCCGGGCTTGTCGGGTCGAATGCA
GTCATTCGTTTCTTCTCTTGGGGGACATGAAAGGGGCGTCAACGTCGTAA
GGTTTAGCCCCGACGGACTGAGCTTGGCGAGCGCGAGCGACGGAGGTACG
GTCGTGATCTGGAGCGTGGAGACACTGGCTGCGTGGAGCACCCTCAGTTC
AGACCGTGAAACAAAAAAGACCATCCTGAGGGGGGCAACAGCGGACATCT
ACGATATGTCTTGGTCTCCGGAGTCTAGATACCTCGCGTGCGGCTCAATC
GATCGCCGCGCCCATATTTGGGAAGTGACAACCAAGCGCTCCATCGCGAC
TCTGGAGGATCACGCAAACTACGTGCAGAATCCTCGCATGCTGTCCGGCT
TCAGCTCGTCTTCAGGAGAGCTGTCCTCTTCGACATGAAATCCTCGCATG
CTGTCCGGCTTCAGCTCGTCTTCAGGAGAGCTGTCCTCTTCGACATGA
back to top