mRNA_L-elsbetiae_contig12315.1912.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12315.1912.1
Unique NamemRNA_L-elsbetiae_contig12315.1912.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig12315.1912.1 vs. uniprot
Match: D7G5U9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5U9_ECTSI)

HSP 1 Score: 150 bits (379), Expect = 5.180e-42
Identity = 72/89 (80.90%), Postives = 78/89 (87.64%), Query Frame = 1 
Query:    1 QRELFSPSLMVEFDEDSPSFRRKVEALDRNVEGLRGQLQQLVIVARKYCGTGLALCDHGRELAGVLMNQRGESWFTRLGFLAPELESLG 267
            Q+ELF P+L++EF EDSP+FRRKVE LD NVEGLRGQLQQLV VARKYCG GLA C+HGRELAGVLMN RGESWFTRLG LAP LE LG
Sbjct:  277 QKELFLPNLVMEFGEDSPAFRRKVETLDSNVEGLRGQLQQLVAVARKYCGNGLAFCEHGRELAGVLMNPRGESWFTRLGALAPALEELG 365
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BLAST of mRNA_L-elsbetiae_contig12315.1912.1 vs. uniprot
Match: A0A6H5L2J8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2J8_9PHAE)

HSP 1 Score: 138 bits (347), Expect = 5.470e-36
Identity = 66/79 (83.54%), Postives = 69/79 (87.34%), Query Frame = 1 
Query:   31 VEFDEDSPSFRRKVEALDRNVEGLRGQLQQLVIVARKYCGTGLALCDHGRELAGVLMNQRGESWFTRLGFLAPELESLG 267
            +EF EDSP+FRRKVE LD NVEGLRGQLQQLV VARKYCG GLA C+HGRELAGVLMN RGESWFTRLG LAP LE LG
Sbjct:    1 MEFGEDSPAFRRKVETLDSNVEGLRGQLQQLVAVARKYCGNGLAFCEHGRELAGVLMNPRGESWFTRLGALAPALEELG 79
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BLAST of mRNA_L-elsbetiae_contig12315.1912.1 vs. uniprot
Match: A0A4D9CVE4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CVE4_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 6.510e-15
Identity = 45/113 (39.82%), Postives = 61/113 (53.98%), Query Frame = 1 
Query:   13 FSPSLMVEFDEDSPSFRRKVEALDRNVEGLRGQLQQLVIVARKYCGTGLALCDHGRELAGVLMNQR----------------------------GESWFTRLGFLAPELESLG 267
            F  ++++E++EDSPSFRRK++ALD NVEG+R  LQ+LV + +KY   G+A    GR  A  LM+ +                            GESWF+RLG LAP L   G
Sbjct:  296 FQSTVVLEYEEDSPSFRRKLQALDENVEGMRKHLQRLVDIVQKYIEAGVAFSAVGRIFASELMHLQEGKASGKSGTGXXXXXXXXXXGLSQQGGGESWFSRLGDLAPALVRFG 408
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BLAST of mRNA_L-elsbetiae_contig12315.1912.1 vs. uniprot
Match: A0A835ZCL2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCL2_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 2.820e-8
Identity = 28/40 (70.00%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:    4 RELFSPSLMVEFDEDSPSFRRKVEALDRNVEGLRGQLQQL 123
            + LF P+L++EF EDSPSFRRKVE LD+NV GLRG  QQL
Sbjct:  250 KSLFKPNLIIEFAEDSPSFRRKVETLDQNVIGLRGHQQQL 289
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12315.1912.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G5U9_ECTSI5.180e-4280.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L2J8_9PHAE5.470e-3683.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A4D9CVE4_9STRA6.510e-1539.82Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A835ZCL2_9STRA2.820e-870.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12315contigL-elsbetiae_contig12315:2556..3965 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size267
Cds size240
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12315.1912.1prot_L-elsbetiae_contig12315.1912.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12315 2583..3965 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815428.953091-UTR-L-elsbetiae_contig12315:2555..25821622815428.953091-UTR-L-elsbetiae_contig12315:2555..2582Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12315 2556..2582 +
1691682893.656542-UTR-L-elsbetiae_contig12315:2555..25821691682893.656542-UTR-L-elsbetiae_contig12315:2555..2582Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12315 2556..2582 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815428.965182-CDS-L-elsbetiae_contig12315:2582..26521622815428.965182-CDS-L-elsbetiae_contig12315:2582..2652Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12315 2583..2652 +
1691682893.6691039-CDS-L-elsbetiae_contig12315:2582..26521691682893.6691039-CDS-L-elsbetiae_contig12315:2582..2652Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12315 2583..2652 +
1622815428.9777012-CDS-L-elsbetiae_contig12315:3350..34651622815428.9777012-CDS-L-elsbetiae_contig12315:3350..3465Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12315 3351..3465 +
1691682893.683869-CDS-L-elsbetiae_contig12315:3350..34651691682893.683869-CDS-L-elsbetiae_contig12315:3350..3465Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12315 3351..3465 +
1622815428.9945834-CDS-L-elsbetiae_contig12315:3910..39651622815428.9945834-CDS-L-elsbetiae_contig12315:3910..3965Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12315 3911..3965 +
1691682893.6955454-CDS-L-elsbetiae_contig12315:3910..39651691682893.6955454-CDS-L-elsbetiae_contig12315:3910..3965Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12315 3911..3965 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12315.1912.1

>prot_L-elsbetiae_contig12315.1912.1 ID=prot_L-elsbetiae_contig12315.1912.1|Name=mRNA_L-elsbetiae_contig12315.1912.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=80bp
MVEFDEDSPSFRRKVEALDRNVEGLRGQLQQLVIVARKYCGTGLALCDHG
RELAGVLMNQRGESWFTRLGFLAPELESLG
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mRNA from alignment at L-elsbetiae_contig12315:2556..3965+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12315.1912.1 ID=mRNA_L-elsbetiae_contig12315.1912.1|Name=mRNA_L-elsbetiae_contig12315.1912.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1410bp|location=Sequence derived from alignment at L-elsbetiae_contig12315:2556..3965+ (Laminarionema elsbetiae ELsaHSoW15)
CAGAGAGAGCTCTTCTCGCCGAGCCTGATGGTGGAGTTCGACGAGGACTC
GCCGTCGTTCCGGAGGAAGGTGGAGGCCCTGGACAGGAACGTGGAAGGTG
CGACGAGACTGCATGCGTACCGTAGATGACAAGAGATGCCCCCCCCCCCC
CCCCCCCCGGACACATTTTCAGAGCTAAATAGATTACTCCGTAACGAAGA
GGGTGCCAGTGAATATATATCTACCAGGCGACACTTTTTCGGACAGCCTA
GGCGATGTGGATATTTCCGACGCTACCCCATTCGGCACTACAGCAGTAGC
AGTCTTCTTGCCGGGGAGGAGTCGATCTTCGAAAATCTGTCCGGGTGTGT
GTGTCTGTGTGTGTGTGTGTGTGTGTGTGTCACCTACGGTACAATAGGCA
ATCTTACCCACTCCTAAGTACGTACGTACATATTTAGATGATCTATGTAG
CCCCCAAGCCTAACCCCAACTCTGTTGTGGGTCGGTTGGTGTCAATTCCA
GGGTTATACTCCTATGATTACGAGTGTACGTGAGGTTTCGCCTTACGCGA
ACCCTCAAGCGCGCACACGCACGCACGCGTGCGGCGTGCGCGCCCTTGTT
GCGTGGCGGTGCTCGTTAGTTTCAACGTGATTTTATTTTCTCGTGATATT
TAATTTCGCGTTTGTCCCCCCCCCCGTGCGCCGCCGCCGCCGCCGCCCCC
TTAATTTGGCTTCGTCTTGTTTCTGCCGGCACTGACTGGCTGCTCTCGTG
TGTACATCATGTACACCGGCTTGAATCTCTCCTGTCCCAAAACAGGCCTT
CGGGGCCAGTTGCAGCAGCTCGTTATCGTTGCCCGCAAGTACTGCGGGAC
CGGGCTCGCCCTCTGCGACCACGGCCGCGAGCTGGCGGGTGTCCTCATGA
ACCAACGGGGGTGAGTAAGCGAGCAAAAGGCGTGTCGGTCTGTTCTGTCT
GTCTTGTCTGCGCGTGGGTGTGTGTGTGTGCTTCTGTGTGTAGCGAAGAG
TTGATTATGCTCGCCGGCTGCTGGCGTGTGTCTCTTTTCGGCCTGTGCGG
GATGTCTCTCGTGTGTGTGTGTGTGTGAGTGAGTGGGGGATTTGTTTTCG
GAAGAAAAGGTTGTGATTGGCGTGTCAACCTTGCTGACCTGCCGGCTGAC
GGGAAGGGTCGTGCGTCATCTCAACAGCCCAAACGTGTGCAGTTTTATTG
GTTTCGCCCCCTAAATACGCATTCTCAATTGTCTTCTCTTCTACAACATC
GTGGGATGGGACGGGATGGAGTGTTGACGTTGGGATGGAATAGAATGGAA
TGGAATGCAATGTCAATGTCAATGTCGACGATGCCTCCTGGCTGCTCTTG
TACAGGGAGAGCTGGTTCACGCGGCTCGGCTTCTTGGCCCCCGAGCTGGA
GTCCCTGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12315:2556..3965+

>mRNA_L-elsbetiae_contig12315.1912.1 ID=mRNA_L-elsbetiae_contig12315.1912.1|Name=mRNA_L-elsbetiae_contig12315.1912.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=480bp|location=Sequence derived from alignment at L-elsbetiae_contig12315:2556..3965+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGGAGTTCGACGAGGACTCGCCGTCGTTCCGGAGGAAGGTGGAGGC
CCTGGACAGGAACGTGGAAGATGGTGGAGTTCGACGAGGACTCGCCGTCG
TTCCGGAGGAAGGTGGAGGCCCTGGACAGGAACGTGGAAGGCCTTCGGGG
CCAGTTGCAGCAGCTCGTTATCGTTGCCCGCAAGTACTGCGGGACCGGGC
TCGCCCTCTGCGACCACGGCCGCGAGCTGGCGGGTGTCCTCATGAACCAA
CGGGGGCCTTCGGGGCCAGTTGCAGCAGCTCGTTATCGTTGCCCGCAAGT
ACTGCGGGACCGGGCTCGCCCTCTGCGACCACGGCCGCGAGCTGGCGGGT
GTCCTCATGAACCAACGGGGGGAGAGCTGGTTCACGCGGCTCGGCTTCTT
GGCCCCCGAGCTGGAGTCCCTGGGGGGAGAGCTGGTTCACGCGGCTCGGC
TTCTTGGCCCCCGAGCTGGAGTCCCTGGGG
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