mRNA_L-elsbetiae_contig12307.1908.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12307.1908.1
Unique NamemRNA_L-elsbetiae_contig12307.1908.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig12307.1908.1 vs. uniprot
Match: A0A6H5KWW8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWW8_9PHAE)

HSP 1 Score: 292 bits (747), Expect = 6.860e-90
Identity = 159/192 (82.81%), Postives = 169/192 (88.02%), Query Frame = 1 
Query:  118 DSDFLFEQKLESVRAALLCGAVGAASRLLAVGAGVLIPGTFLREALAAPEPAAASVLFGLAAGFSQGALFGLTYRYVVRSDRETPSASGTPDRPTTPVPQMDGFTVGHLGDGAVAAFALTSALGQSEVPLTLAAGEFVGVLGRGGGIVEALGAVLLPAAPFLPRVAGDLFVYSAARAALDRALDRGAIKPFP 693
            DSDFLFEQKLESVRAA+LCG+VGA SRLLAVGAG L+PG   REALAAPEPA +S+LFGLAAGF+QGALFGLTYRYVVRSDRE  S S T   P  PVPQMDGFTVGHLGDG VAAFALTSALGQSE PLTLAAGEFVGVLGRGGGI+EAL AVLLPAAPFLPR A DLF+Y+AAR A+DRALD G IKPFP
Sbjct:  162 DSDFLFEQKLESVRAAVLCGSVGATSRLLAVGAGGLLPGGLFREALAAPEPAGSSLLFGLAAGFAQGALFGLTYRYVVRSDREQ-SPSATTGEP--PVPQMDGFTVGHLGDGCVAAFALTSALGQSEAPLTLAAGEFVGVLGRGGGILEALAAVLLPAAPFLPRAAADLFLYTAARLAIDRALDEGVIKPFP 350
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BLAST of mRNA_L-elsbetiae_contig12307.1908.1 vs. uniprot
Match: D8LP08_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP08_ECTSI)

HSP 1 Score: 263 bits (672), Expect = 4.780e-80
Identity = 148/186 (79.57%), Postives = 158/186 (84.95%), Query Frame = 1 
Query:  118 DSDFLFEQKLESVRAALLCGAVGAASRLLAVGAGVLIPGTFLREALAAPEPAAASVLFGLAAGFSQGALFGLTYRYVVRSDRETPSASGTPDRPTTPVPQMDGFTVGHLGDGAVAAFALTSALGQSEVPLTLAAGEFVGVLGRGGGIVEALGAVLLPAAPFLPRVAGDLFVYSAARAALDRALDRG 675
            DSDFLFEQKLESVRAA+LCG+VGAASRLLAVGAG L+PG  LREALAAPEPA +S+LFGLAAGF+QGALFGLTYRYVVRSDRE  S S T   P  PVPQMDGFTVGHLGDG VAAFALTSALGQSE PLTLAAGEFV VL RGGGI+EAL AVLLPAAPFLPR A DLF+YS+   A   +  RG
Sbjct:   70 DSDFLFEQKLESVRAAVLCGSVGAASRLLAVGAGALLPGGLLREALAAPEPAGSSLLFGLAAGFAQGALFGLTYRYVVRSDREQ-SPSATTGEP--PVPQMDGFTVGHLGDGCVAAFALTSALGQSEAPLTLAAGEFVRVLWRGGGILEALAAVLLPAAPFLPRAAADLFLYSSPPLAPPTSSPRG 252
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BLAST of mRNA_L-elsbetiae_contig12307.1908.1 vs. uniprot
Match: A0A7S2XV80_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XV80_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 5.030e-6
Identity = 53/183 (28.96%), Postives = 82/183 (44.81%), Query Frame = 1 
Query:  139 QKLESVRAALLCGAVGAASRLLAVGAGVLIPGTFLREALAAPEPAAASVLFGLAAGFSQGALFGLTYRYVVRSDRETPSASGTPDRPTTPVPQMDGFTVGHLGDGAVAAFALTSALGQSEVPLTLAAGEFVGVLGRGGGIVEALGAVLLPAAPFLPRVAGDLFVYSAARAALDRALDRGAIKP 687
            Q++ES+++A++ GA    +RL         P   + +         + V+  + +   +GALFGL YRYV+RSD + P                  F+   LG GA AAFALTS L  +E  L+    +F+ +  +  G    LG  L+ +A      A     +  A+  +D  LD G I P
Sbjct:   93 QRIESLKSAVVGGAAVGGTRLALTVLDGTKPWNMVNDV-----DTLSRVIVEVGSATLEGALFGLLYRYVIRSDMKKPKDELV-------------FSADQLGGGAAAAFALTSFLPANEERLSRILSDFLSLALQLDGKQADLGTTLMESAYTSGSFALSFIGFLVAKITIDSCLDAGIISP 257
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BLAST of mRNA_L-elsbetiae_contig12307.1908.1 vs. uniprot
Match: K9W4I0_9CYAN (Uncharacterized protein n=1 Tax=Crinalium epipsammum PCC 9333 TaxID=1173022 RepID=K9W4I0_9CYAN)

HSP 1 Score: 55.1 bits (131), Expect = 2.670e-5
Identity = 57/192 (29.69%), Postives = 78/192 (40.62%), Query Frame = 1 
Query:  121 SDFLFEQKLESVRAALLCGAVGAASRLLAVGAGVLIPGTFLREALAAPEPAAASVLFGLAAGFSQGALFGLTYRYVVRSDRETPSASGTPDRPTTPVPQMDGFTVGHLGDGAVAAFALTSALGQSEVPLTL--AAGEFVGVLGRGGGIVEALGAVLLPAAPFLPRVAGDLFVYSAARAALDRALDRGAIKPF 690
            S F   ++LES++A +L G V A    +A  A  L+        +     A  ++L   A     G LFG+TYRY++RSD                       T  HL DGAV AF L   L Q +V L    A   F G+LG     +E                   + +++ AR  LD A+  G IKPF
Sbjct:    5 SQFNPTERLESIKAGILAGIVVALVYAIATLANSLLLAEVFEALVGLQSKADVNLLVSGAIASLSGCLFGITYRYIIRSD-----------------------TNSHLNDGAVLAFGLVRGLAQVDVGLKFPDAVWSF-GILG-----IE------------------SILLFAIARFTLDLAMQLGWIKPF 149
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12307.1908.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KWW8_9PHAE6.860e-9082.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LP08_ECTSI4.780e-8079.57Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A7S2XV80_9STRA5.030e-628.96Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
K9W4I0_9CYAN2.670e-529.69Uncharacterized protein n=1 Tax=Crinalium epipsamm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12307contigL-elsbetiae_contig12307:482..3415 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-06_007040.1
Exons2
Model size1923
Cds size696
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12307.1908.1prot_L-elsbetiae_contig12307.1908.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12307 482..2188 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815428.776693-CDS-L-elsbetiae_contig12307:481..8221622815428.776693-CDS-L-elsbetiae_contig12307:481..822Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12307 482..822 +
1691682893.5635564-CDS-L-elsbetiae_contig12307:481..8221691682893.5635564-CDS-L-elsbetiae_contig12307:481..822Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12307 482..822 +
1622815428.7891788-CDS-L-elsbetiae_contig12307:1833..21881622815428.7891788-CDS-L-elsbetiae_contig12307:1833..2188Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12307 1834..2188 +
1691682893.5752892-CDS-L-elsbetiae_contig12307:1833..21881691682893.5752892-CDS-L-elsbetiae_contig12307:1833..2188Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12307 1834..2188 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815428.8030581-UTR-L-elsbetiae_contig12307:2188..34151622815428.8030581-UTR-L-elsbetiae_contig12307:2188..3415Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12307 2189..3415 +
1691682893.585379-UTR-L-elsbetiae_contig12307:2188..34151691682893.585379-UTR-L-elsbetiae_contig12307:2188..3415Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12307 2189..3415 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12307.1908.1

>prot_L-elsbetiae_contig12307.1908.1 ID=prot_L-elsbetiae_contig12307.1908.1|Name=mRNA_L-elsbetiae_contig12307.1908.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=232bp
MFRPQQARPSAPAPPPAAPAALREEAAQASRRRRQRRHHDSDFLFEQKLE
SVRAALLCGAVGAASRLLAVGAGVLIPGTFLREALAAPEPAAASVLFGLA
AGFSQGALFGLTYRYVVRSDRETPSASGTPDRPTTPVPQMDGFTVGHLGD
GAVAAFALTSALGQSEVPLTLAAGEFVGVLGRGGGIVEALGAVLLPAAPF
LPRVAGDLFVYSAARAALDRALDRGAIKPFP*
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mRNA from alignment at L-elsbetiae_contig12307:482..3415+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12307.1908.1 ID=mRNA_L-elsbetiae_contig12307.1908.1|Name=mRNA_L-elsbetiae_contig12307.1908.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2934bp|location=Sequence derived from alignment at L-elsbetiae_contig12307:482..3415+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTTCGGCCCCAACAGGCACGGCCATCAGCGCCAGCGCCTCCACCAGC
AGCGCCAGCAGCGCTGAGAGAAGAAGCGGCGCAAGCCTCCCGCCGCCGTC
GACAACGGCGCCACCACGACAGCGACTTCCTCTTCGAGCAGAAGCTGGAG
AGCGTGCGCGCCGCTCTGCTCTGCGGGGCGGTCGGCGCGGCCTCGCGGTT
GCTCGCGGTCGGGGCCGGGGTGCTTATCCCGGGGACGTTCTTGAGGGAAG
CGCTGGCGGCGCCCGAGCCGGCGGCTGCGTCCGTCCTGTTCGGCCTAGCC
GCGGGGTTCTCGCAGGGGGCCCTCTTCGGACTGACTTACCGGTGAGGCGT
GCACAAGCGTTTCAAACAACACTGGTACTGAGTGTGGCACAAAATGAAGG
AGGATGAGATGGTGCCCAATATGGTGTTTTCTGGCGCATTTTTTTGGTTT
TGTGGTATGTTCTCTCCTCGGTGTACATACCAGTGATACATCCGTACACA
TGTACACGTGTATTTTTTTTTTTTTATATGTCTAGATACAAATGTCAGCA
GTCTATGTCCAACCCGTGAAAGAGTATTGTGTGTGTGCACGCGCGTGCAC
CTGTATGTGTTCTGCGTTTGTTTGTGAAAGATAGATCAGATATTCAATAA
AACGGAACCTATTTAGCTGAGACGGGACTCTGATATGGTTATGTTTATTT
TTCGTGGGTTGTTTGCATTCGGGTGGCGTCGGGGGAGCAAGCAGGAACGG
AATGCGTGCTCCTTGTTCATTGCGCTTCATTCTTGCAGCATGAGCGGGAT
GGGATCTGTCTTGCCCTCTCCTCCCTTTCTACTTGACTTGGTCGCGGCCG
TTCGTGAGCGTACTGTGTTTCGAGTAGAGGTGCTGAACTGAACCACGATC
CGGCAATATACCCGGATGGTACGCTGCTTCGGTACGGAAAGATGTCAAAG
ATGGTGGTACATATGTATGTGCGATACGCCGCATTCCCGTATTCGGTTGT
ATTAACCTCCGGGTCCCCGCTATAGTGCGAGTGAATACCCCCCCCCACCT
CGAAAGGATGGGGGGGGGGGGGTTAGGCTAGGATGCGTGGCTGGTAGCCT
ACCGGTAATGAAAACGCAAGTGATGTTAAATGAGCACCCAAAAATACCCA
ACCCCCACCTGTGGGTATACCCAATCCGGTCGAACGGCAAAGCCCGGCGG
AACGGCCAAAGTATAAATGTACACTAGTAGATGCCTACGCGCACTTTACC
GACCCGTACTTGGGGCCTGCACCCCCCAAATTCTGGCGCGCGAAAAAAGA
AAAAAACTGAAAAAAAAAACGATTTGACGCTTCTTGATTGATCACAACGC
AGATACGTCGTGCGCTCCGACCGCGAGACGCCGAGCGCTTCCGGCACACC
CGACCGGCCCACCACCCCCGTCCCGCAGATGGACGGCTTCACGGTGGGGC
ACCTCGGGGACGGAGCCGTCGCCGCGTTCGCTCTCACCTCCGCCCTCGGA
CAGAGCGAGGTCCCGCTGACCCTGGCGGCCGGGGAGTTTGTCGGCGTTTT
GGGGCGGGGAGGGGGGATAGTCGAGGCGCTCGGAGCCGTGCTCTTGCCGG
CCGCGCCGTTTCTGCCGCGGGTGGCCGGGGATCTGTTCGTGTACTCGGCG
GCCCGGGCGGCGCTCGACCGGGCGCTTGACCGGGGGGCGATCAAGCCGTT
TCCCTGAAAAACAGAATAAACTGATCGTTTTTTTACGGGGGTTTGCCTTG
TTTTTTTTAACTGGCTCGATGATCGACCTGTCTTTTTTGTTCGTTATTTC
CGGCCCGGCCCCCCCCTGTGTTTGTTGGCTTGTTTTCCGGATTTGTTTGC
TTCCGTGCCAGCGATGACGTGGGGTTGGTATCATGGCGCTGTGTGCTCTT
GGCGATGGCGTGGTTGGTTTATCGTTCTATCATTCTGATCGTTTGGCCCG
GGACGGTGACGCTTTTGTGTCACTTGCCACTGCACAAGAAACCATTTTTC
GTGGGCGGTATGGCGGTCGAGTTGCTCTCCAAAGAAGCACTTCCCGGCCC
CCCTCTTCGGAACACCCCGTGGTGCCTGTTCTGCCTGCCTCTGCTGGGGA
TGTTGTGTGCACCGCCTAACTAGGTTATTTTTTACGCGGGTGCGGGCGCA
GGATGGTGAAACACGGAGGGGGGGTCTGTTTTTTCATCGCATGTGAAGGA
GAAAAATATAAGAGTATGTATGTACTAACATATTTTATGGGCTTGTCCCT
CAGTTTTGTTCCTCGTCTACAAAGACTGCTGTTTGCTGTTTCCGCGTGTT
TTTGGCTTGCTTTTGCTTGCCGCCGCCGTCGTCCAACAGTTCGTAGGGTG
TGGTGTTGCGGTTGCCGGGGGCTGTGCGGCGGGACGTTGCGGCTTAAATT
CCATTCCCGTTCGGGGCGTGTATCTACATACTCTGTTCGTGACTTTCGTT
TTCTGAAACTTGGATGTATGGACTTTCCTGTAGTGGAGAGAGAGGGGGGG
CGGTGTTTTATAGGATAGAGATAGCTGGAGAGAGACCGGGAAGAAGGGAT
GAAGCGCCTCCTTGAAACTTGTCTTTTTTTCGGAATGTTCTCGTAGTCAC
AACGTAAAAACTGCTGACAACTGGACACGGGCAAGGTGTCATCGTTTAAT
GCGCAGGAAAAAGCAGCAGATGGAGTTGTAATACAAATCACACGTCGCAA
CAGAGTCCTGTGACTCCCGGCAGCATTCGTTACGCCCTTGTGTTGGTTGC
GCCGTGTGAAGGCTGTGCTCCGTTTTCGAGGCCGAAACAAAACTATTTGC
CCCACGTCTCAAGGAAGCTTGAATTTTTCCCAAAAGCGTTTAGGGAAGAA
ACAAGATGACACGGGGAGACGGCTGTGCCATGAGCTTAGTTTAGATCATG
GCCATCAAAGACCATCTTATATCATACATGTGCT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12307:482..3415+

>mRNA_L-elsbetiae_contig12307.1908.1 ID=mRNA_L-elsbetiae_contig12307.1908.1|Name=mRNA_L-elsbetiae_contig12307.1908.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1392bp|location=Sequence derived from alignment at L-elsbetiae_contig12307:482..3415+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTTCGGCCCCAACAGGCACGGCCATCAGCGCCAGCGCCTCCACCAGC
AGCGCCAGCAGCGCTGAGAGAAGAAGCGGCGCAAGCCTCCCGCCGCCGTC
GACAACGGCGCCACCACGACAGCGACTTCCTCTTCGAGCAGAAGCTGGAG
AGCGTGCGCGCCGCTCTGCTCTGCGGGGCGGTCGGCGCGGCCTCGCGGTT
GCTCGCGGTCGGGGCCGGGGTGCTTATCCCGGGGACGTTCTTGAGGGAAG
CGCTGGCGGCGCCCGAGCCGGCGGCTGCGTCCGTCCTGTTCGGCCTAGCC
GCGGGGTTCTCGCAGGGGGCCCTCTTCGGACTGACTTACCGATGTTTCGG
CCCCAACAGGCACGGCCATCAGCGCCAGCGCCTCCACCAGCAGCGCCAGC
AGCGCTGAGAGAAGAAGCGGCGCAAGCCTCCCGCCGCCGTCGACAACGGC
GCCACCACGACAGCGACTTCCTCTTCGAGCAGAAGCTGGAGAGCGTGCGC
GCCGCTCTGCTCTGCGGGGCGGTCGGCGCGGCCTCGCGGTTGCTCGCGGT
CGGGGCCGGGGTGCTTATCCCGGGGACGTTCTTGAGGGAAGCGCTGGCGG
CGCCCGAGCCGGCGGCTGCGTCCGTCCTGTTCGGCCTAGCCGCGGGGTTC
TCGCAGGGGGCCCTCTTCGGACTGACTTACCGATACGTCGTGCGCTCCGA
CCGCGAGACGCCGAGCGCTTCCGGCACACCCGACCGGCCCACCACCCCCG
TCCCGCAGATGGACGGCTTCACGGTGGGGCACCTCGGGGACGGAGCCGTC
GCCGCGTTCGCTCTCACCTCCGCCCTCGGACAGAGCGAGGTCCCGCTGAC
CCTGGCGGCCGGGGAGTTTGTCGGCGTTTTGGGGCGGGGAGGGGGGATAG
TCGAGGCGCTCGGAGCCGTGCTCTTGCCGGCCGCGCCGTTTCTGCCGCGG
GTGGCCGGGGATCTGTTCGTGTACTCGGCGGCCCGGGCGGCGCTCGACCG
GGCGCTTGACCGGGGGGCGATCAAGCCGTTTCCCTGAATACGTCGTGCGC
TCCGACCGCGAGACGCCGAGCGCTTCCGGCACACCCGACCGGCCCACCAC
CCCCGTCCCGCAGATGGACGGCTTCACGGTGGGGCACCTCGGGGACGGAG
CCGTCGCCGCGTTCGCTCTCACCTCCGCCCTCGGACAGAGCGAGGTCCCG
CTGACCCTGGCGGCCGGGGAGTTTGTCGGCGTTTTGGGGCGGGGAGGGGG
GATAGTCGAGGCGCTCGGAGCCGTGCTCTTGCCGGCCGCGCCGTTTCTGC
CGCGGGTGGCCGGGGATCTGTTCGTGTACTCGGCGGCCCGGGCGGCGCTC
GACCGGGCGCTTGACCGGGGGGCGATCAAGCCGTTTCCCTGA
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