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Homology
BLAST of mRNA_L-elsbetiae_contig12295.1896.1 vs. uniprot
Match: A0A6H5L4P0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4P0_9PHAE) HSP 1 Score: 134 bits (338), Expect = 4.560e-33 Identity = 84/159 (52.83%), Postives = 98/159 (61.64%), Query Frame = 1
Query: 121 MDADYVMGTEEWQAATSTISTTTRA-IPASAWRTPLARHLKLRNFLE------GDSGXXXXXXXXXXXXXKDLLEEKNDE--YESRGCT--HPLHVAASQNILKLGSLLLSGTARTPVDPDVRDGSGKTALHWAAMTDRAGFVLLLLESGAAVDTTDSQ 564
MD + VM +++W ATS ISTTT + IPA AWRTPLARHLKL +FLE G+S XX D+ + G HPLHVAASQNILKLG +LLS A VDP+VRDGSG+T LHWAAMT R F LLLLES A +D D +
Sbjct: 26 MDVEDVMRSQDWVKATSAISTTTSSGIPARAWRTPLARHLKLVSFLEAGDGCNGNSNINNNSNRVSRDXXXXXXXXXXDDCLLDEEGTMRHHPLHVAASQNILKLGRVLLSPAAAASVDPNVRDGSGRTPLHWAAMTGRVDFALLLLESDAKLDAVDRE 184
BLAST of mRNA_L-elsbetiae_contig12295.1896.1 vs. uniprot
Match: D7G1Y0_ECTSI (Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1Y0_ECTSI) HSP 1 Score: 99.0 bits (245), Expect = 9.300e-21 Identity = 49/68 (72.06%), Postives = 54/68 (79.41%), Query Frame = 1
Query: 361 HPLHVAASQNILKLGSLLLSGTARTPVDPDVRDGSGKTALHWAAMTDRAGFVLLLLESGAAVDTTDSQ 564
HPLHVAASQNILKLG++LLS A VDP VRDGSG+T LHWAAMT RA F LLLLESGA +D D +
Sbjct: 4 HPLHVAASQNILKLGTVLLSPAAAASVDPCVRDGSGRTPLHWAAMTGRADFALLLLESGAKLDAVDRE 71
BLAST of mRNA_L-elsbetiae_contig12295.1896.1 vs. uniprot
Match: A0A2T3AKG0_9PEZI (Uncharacterized protein n=1 Tax=Coniella lustricola TaxID=2025994 RepID=A0A2T3AKG0_9PEZI) HSP 1 Score: 57.8 bits (138), Expect = 1.870e-5 Identity = 37/92 (40.22%), Postives = 46/92 (50.00%), Query Frame = 1
Query: 316 LLEEKNDEYESRGCTH--PLHVAASQNILKLGSLLLSGTARTPVDPDVRDGSGKTALHWA-AMTDRAGFVLLLLESGAAVDTTDSQSRTPLL 582
LL +K + R T PLH + +L LLSG DP+ GKTALH A A+++R FV LLLE GA D T TPL+
Sbjct: 184 LLLQKGADPNLRDSTRRSPLHWTVTNGLLDFARCLLSGAYGIKADPNAAQNRGKTALHLASALSNRLDFVALLLEHGAYADATSDGRWTPLI 275
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 99.0 |
| Seed ortholog evalue | 4.6e-18 |
| Seed eggNOG ortholog | 2880.D7G1Y0 |
| Hectar predicted targeting category | other localisation |
| EggNOG free text desc. | response to abiotic stimulus |
| EggNOG OGs | COG0666@1,KOG4177@2759 |
| COG Functional cat. | G |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Ec32 ortholog description | Ankyrin repeat-containing domain |
| Ec32 ortholog | Ec-07_003720.1 |
| Exons | 2 |
| Model size | 1021 |
| Cds size | 1020 |
| Stop | 0 |
| Start | 0 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815427.105748-CDS-L-elsbetiae_contig12295:538..1408 | 1622815427.105748-CDS-L-elsbetiae_contig12295:538..1408 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig12295 539..1408 - |
| 1691682892.7302163-CDS-L-elsbetiae_contig12295:538..1408 | 1691682892.7302163-CDS-L-elsbetiae_contig12295:538..1408 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig12295 539..1408 - |
| 1622815427.1154444-CDS-L-elsbetiae_contig12295:2616..2766 | 1622815427.1154444-CDS-L-elsbetiae_contig12295:2616..2766 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig12295 2617..2766 - |
| 1691682892.7438788-CDS-L-elsbetiae_contig12295:2616..2766 | 1691682892.7438788-CDS-L-elsbetiae_contig12295:2616..2766 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig12295 2617..2766 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig12295.1896.1 >prot_L-elsbetiae_contig12295.1896.1 ID=prot_L-elsbetiae_contig12295.1896.1|Name=mRNA_L-elsbetiae_contig12295.1896.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=340bp
QSPVRSCEVITYMPFAPSDHIRRFRRREKTSRLHQREGQTMDADYVMGTE
EWQAATSTISTTTRAIPASAWRTPLARHLKLRNFLEGDSGGGGGSIIGSG
GGGKDLLEEKNDEYESRGCTHPLHVAASQNILKLGSLLLSGTARTPVDPD
VRDGSGKTALHWAAMTDRAGFVLLLLESGAAVDTTDSQSRTPLLCSSAFG
ATAAVRLLLRWGAAASRAARGGLTPLHGAASGGHVEVAEVLVEAGADVHG
RTEMGAKPRHLAERHGHAGVVRALSLAASRQPSLSSASACTSIAAAEDDD
DGLWDGSGGGARGGGGGGGGGGAGGGAYDDRREEVLAQHR back to topmRNA from alignment at L-elsbetiae_contig12295:539..2766- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig12295.1896.1 ID=mRNA_L-elsbetiae_contig12295.1896.1|Name=mRNA_L-elsbetiae_contig12295.1896.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2228bp|location=Sequence derived from alignment at L-elsbetiae_contig12295:539..2766- (Laminarionema elsbetiae ELsaHSoW15)
CAATCTCCGGTGCGAAGTTGCGAAGTCATCACATATATGCCATTTGCGCC
GAGTGATCACATTCGCAGGTTCCGCCGTAGAGAGAAAACCAGCCGTCTTC
ACCAAAGAGAAGGTCAAACCATGGACGCAGACTATGTGATGGGCACGGAG
GTGAGGCCCTGTCAAATGTGGGCATTTTTAGCGAAATGTTGTCGTGTTTT
CAACGTGAAAACAAACCAGCTGCCTGGAGGCAGTTGTGCAGAGAGACAGC
GGGAGAGAGAGCGGGCTAGCCCTCCCCCCACTCCCGCTCTTGCTTCTCGA
GAAGTGAGTGCGCGGGCGGTTGCGGGAAGGATAGAAAGGGGCGGGGCACC
TCACTCTCTGCTTTTCTTTGCTTTCTCCTGGCCGGGAAAATATATCGCCT
GGTTCGTCCTGTTCACTGAGCGTAGACAGTCAGTTACCTAGATAGGTGAC
GCGCGTGCGCCTCTTTTCCATGGCGCCCCCCCCCCCTCTACTCCGACGGC
GTGGCGTTCTCCCCTCCTTTTGGTCATGGTATCCATACATGCCGTAAGGT
GTACTCCGGCAGTTATTTCATCATCGCTCGTCTATCGCCGGGTAGATGTG
ATTCTTGCTTGTTGGTGTTGGGGGGAAAACCCCCTCCCCCCCTCCCACCG
CTTGTGGGTCCTTTGTTTTCCCATAACTGGTTGCCATCCCCCCCCCCCCC
CCCCCCCCCTCCTCGCACATGACCAAATCTAAGAGGACCTGACCCTCACT
CCTCGCAATATGCAGCTGTTTGACGATTAAGTGCGTGTAGGGGGGAGGGG
GGTTGAAGATTGAAAATGCTGCTATGCTCTGTACATACAACTGACGCAGC
GGAAACAAACACGTTTGTGTGCACAGAGGGTGGGGTCGCTCTCTCTAGGA
ATACTCTAACACACGCACATACTACTGTAGCTTCCGCCGCGGGATCAACT
CTCTTTTGTTGCGTGGGTCCACCTGTAGACGCTCTCGCACTTCAAGCAAA
AAATATGGGTATGTCGGTGAGCGGCAAAAAAGAGCCAGCGTCAGGAAGAT
AAGAGGTGTGCTGGTTTCGACCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCACCCCACGCCCCTGACACCCC
CCCACGCCCCCCCATCCCCCACACCCCNNNNNNNNNNACAAAAAAAAATG
GTGTGTGGGGGGGGGGGGAAAAAAAAGCGGCCGTCAGGAAAAAAAGGGGG
TGTGTGTTTTCCTCCCCCCCCCCCCCCCCCCCCCCCCGGCCGCGCGTCTC
GACTGATGATTATTAAAACGATAACATATTTCTGTGAACTCTTGTTTGCT
CTCTGCAGGAGTGGCAAGCCGCAACGTCTACCATCTCTACAACGACACGT
GCGATCCCCGCAAGCGCATGGCGCACACCCCTGGCGCGGCACCTCAAGCT
ACGGAATTTCCTGGAAGGGGATAGCGGCGGCGGCGGCGGCAGCATCATCG
GCAGCGGCGGCGGCGGCAAGGATCTGCTGGAAGAAAAAAACGACGAGTAC
GAAAGCAGAGGATGCACGCACCCCCTCCACGTGGCCGCCTCTCAGAACAT
CCTCAAGCTCGGCAGCCTGCTCCTGTCGGGGACCGCCAGAACCCCCGTGG
ACCCCGACGTTCGAGACGGATCGGGGAAGACGGCGCTCCACTGGGCGGCG
ATGACCGACCGCGCGGGCTTCGTTCTCTTGCTGCTGGAGAGCGGGGCGGC
CGTCGACACCACGGACTCCCAGAGCCGCACCCCGCTCCTCTGCAGCTCGG
CCTTCGGGGCCACGGCGGCGGTGCGCCTCCTGCTGCGCTGGGGGGCCGCC
GCCTCCCGAGCGGCCCGGGGGGGGCTGACGCCCCTGCACGGCGCCGCCTC
CGGGGGCCACGTGGAGGTGGCGGAGGTGCTGGTCGAGGCGGGGGCGGACG
TCCACGGGCGGACAGAGATGGGTGCTAAACCTCGACACTTGGCCGAGAGG
CACGGGCACGCGGGCGTAGTGCGGGCGCTGTCGCTGGCGGCCTCGCGCCA
ACCGAGCTTGTCGTCCGCGTCCGCGTGCACATCCATAGCAGCAGCGGAGG
ATGATGATGATGGCTTGTGGGATGGAAGCGGCGGTGGCGCGCGAGGCGGC
GGTGGTGGCGGCGGCGGCGGCGGCGCGGGAGGCGGTGCGTACGACGACAG
GCGGGAGGAGGTCTTGGCGCAGCACAGG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig12295:539..2766- >mRNA_L-elsbetiae_contig12295.1896.1 ID=mRNA_L-elsbetiae_contig12295.1896.1|Name=mRNA_L-elsbetiae_contig12295.1896.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2040bp|location=Sequence derived from alignment at L-elsbetiae_contig12295:539..2766- (Laminarionema elsbetiae ELsaHSoW15)
CAATCTCCGGTGCGAAGTTGCGAAGTCATCACATATATGCCATTTGCGCC
GAGTGATCACATTCGCAGGTTCCGCCGTAGAGAGAAAACCAGCCGTCTTC
ACCAAAGAGAAGGTCAAACCATGGACGCAGACTATGTGATGGGCACGGAG
CAATCTCCGGTGCGAAGTTGCGAAGTCATCACATATATGCCATTTGCGCC
GAGTGATCACATTCGCAGGTTCCGCCGTAGAGAGAAAACCAGCCGTCTTC
ACCAAAGAGAAGGTCAAACCATGGACGCAGACTATGTGATGGGCACGGAG
GAGTGGCAAGCCGCAACGTCTACCATCTCTACAACGACACGTGCGATCCC
CGCAAGCGCATGGCGCACACCCCTGGCGCGGCACCTCAAGCTACGGAATT
TCCTGGAAGGGGATAGCGGCGGCGGCGGCGGCAGCATCATCGGCAGCGGC
GGCGGCGGCAAGGATCTGCTGGAAGAAAAAAACGACGAGTACGAAAGCAG
AGGATGCACGCACCCCCTCCACGTGGCCGCCTCTCAGAACATCCTCAAGC
TCGGCAGCCTGCTCCTGTCGGGGACCGCCAGAACCCCCGTGGACCCCGAC
GTTCGAGACGGATCGGGGAAGACGGCGCTCCACTGGGCGGCGATGACCGA
CCGCGCGGGCTTCGTTCTCTTGCTGCTGGAGAGCGGGGCGGCCGTCGACA
CCACGGACTCCCAGAGCCGCACCCCGCTCCTCTGCAGCTCGGCCTTCGGG
GCCACGGCGGCGGTGCGCCTCCTGCTGCGCTGGGGGGCCGCCGCCTCCCG
AGCGGCCCGGGGGGGGCTGACGCCCCTGCACGGCGCCGCCTCCGGGGGCC
ACGTGGAGGTGGCGGAGGTGCTGGTCGAGGCGGGGGCGGACGTCCACGGG
CGGACAGAGATGGGTGCTAAACCTCGACACTTGGCCGAGAGGCACGGGCA
CGCGGGCGTAGTGCGGGCGCTGTCGCTGGCGGCCTCGCGCCAACCGAGCT
TGTCGTCCGCGTCCGCGTGCACATCCATAGCAGCAGCGGAGGATGATGAT
GATGGCTTGTGGGATGGAAGCGGCGGTGGCGCGCGAGGCGGCGGTGGTGG
CGGCGGCGGCGGCGGCGCGGGAGGCGGTGCGTACGACGACAGGCGGGAGG
AGGTCTTGGCGCAGCACAGGGAGTGGCAAGCCGCAACGTCTACCATCTCT
ACAACGACACGTGCGATCCCCGCAAGCGCATGGCGCACACCCCTGGCGCG
GCACCTCAAGCTACGGAATTTCCTGGAAGGGGATAGCGGCGGCGGCGGCG
GCAGCATCATCGGCAGCGGCGGCGGCGGCAAGGATCTGCTGGAAGAAAAA
AACGACGAGTACGAAAGCAGAGGATGCACGCACCCCCTCCACGTGGCCGC
CTCTCAGAACATCCTCAAGCTCGGCAGCCTGCTCCTGTCGGGGACCGCCA
GAACCCCCGTGGACCCCGACGTTCGAGACGGATCGGGGAAGACGGCGCTC
CACTGGGCGGCGATGACCGACCGCGCGGGCTTCGTTCTCTTGCTGCTGGA
GAGCGGGGCGGCCGTCGACACCACGGACTCCCAGAGCCGCACCCCGCTCC
TCTGCAGCTCGGCCTTCGGGGCCACGGCGGCGGTGCGCCTCCTGCTGCGC
TGGGGGGCCGCCGCCTCCCGAGCGGCCCGGGGGGGGCTGACGCCCCTGCA
CGGCGCCGCCTCCGGGGGCCACGTGGAGGTGGCGGAGGTGCTGGTCGAGG
CGGGGGCGGACGTCCACGGGCGGACAGAGATGGGTGCTAAACCTCGACAC
TTGGCCGAGAGGCACGGGCACGCGGGCGTAGTGCGGGCGCTGTCGCTGGC
GGCCTCGCGCCAACCGAGCTTGTCGTCCGCGTCCGCGTGCACATCCATAG
CAGCAGCGGAGGATGATGATGATGGCTTGTGGGATGGAAGCGGCGGTGGC
GCGCGAGGCGGCGGTGGTGGCGGCGGCGGCGGCGGCGCGGGAGGCGGTGC
GTACGACGACAGGCGGGAGGAGGTCTTGGCGCAGCACAGG back to top
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