mRNA_L-elsbetiae_contig1228.1884.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1228.1884.1 vs. uniprot
Match: D8LJV1_ECTSI (Similar to Cell growth regulator with RING finger domain 1 (Cell growth regulatory gene 19 protein) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJV1_ECTSI) HSP 1 Score: 184 bits (466), Expect = 8.110e-55 Identity = 104/205 (50.73%), Postives = 122/205 (59.51%), Query Frame = 1 Query: 1 MRGIAP-VGSWTRHWDPSSEHYFYYERSTGQTRWARPEFPAEVFDSPLAHQRSADDTMLEGVVLHQARDSDPHSSQGYAQQHQEDAMFHRKQQRDDGLPIRKKRGASKD---TNRIYTDAQLNITE-----EPRKDYISIAKEYSITAPFRDTSGKQTCVICQNRKASGVFFPCEHKCACRRCIDQGGFGKPGAVSKGGSLCPVC 588 M G AP VGSWT+HWDPSS+ +FYY+ STGQT W R P E L +R + +LEG+ L QA+++ AQ H D P R+KRG SKD NR++ D L E EPRKDYIS AKEY +TAPFRDT GKQ CVICQ RKAS V FPCEHKC C RCI+ GFG S+ +LCPVC Sbjct: 1 MSGSAPAVGSWTKHWDPSSKQHFYYDPSTGQTTWGR-SVPPEKSTESL--KREGEGNLLEGIFLQQAKET--------AQHH-------------DVRPRRRKRGVSKDRKNNNRVFADDDLPQNETIEDDEPRKDYISFAKEYYLTAPFRDTGGKQICVICQKRKASAVLFPCEHKCVCARCIESEGFGAMRKASEREALCPVC 181
BLAST of mRNA_L-elsbetiae_contig1228.1884.1 vs. uniprot
Match: A0A6H5JCM1_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCM1_9PHAE) HSP 1 Score: 158 bits (400), Expect = 7.340e-45 Identity = 90/189 (47.62%), Postives = 113/189 (59.79%), Query Frame = 1 Query: 49 SSEHYFYYERSTGQTRWARPEFPAEVFDSPLAHQRSADDTMLEGVVLHQARDSDPHSSQGYAQQHQEDAMFHRKQQRDDGLPIRKKRGASKD----TNRIYTDAQLNITE-----EPRKDYISIAKEYSITAPFRDTSGKQTCVICQNRKASGVFFPCEHKCACRRCIDQGGFGKPGAVSKGGSLCPVC 588 +S+ +FYY+ S+GQT W RP P++ DS +R + T+LEG+ L QA+++ AQ H D P R+KRG SKD NR++ D + E EP KDYIS AKEY +TAPFRDT GKQTCVICQ RKAS V FPCEHKC C RCI++ GFG S+ +LCPVC Sbjct: 18 TSQQHFYYDPSSGQTMWGRPIPPSKSTDSL---KREGEGTLLEGIFLQQAKET--------AQHH-------------DVRPWRRKRGGSKDRKNNNNRVFADDGQHQNETIEDDEPCKDYISFAKEYYLTAPFRDTGGKQTCVICQKRKASAVLFPCEHKCVCARCIEREGFGATRTASEREALCPVC 182
BLAST of mRNA_L-elsbetiae_contig1228.1884.1 vs. uniprot
Match: A0A7S2C0Y4_9STRA (Hypothetical protein (Fragment) n=2 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C0Y4_9STRA) HSP 1 Score: 107 bits (266), Expect = 1.690e-23 Identity = 76/246 (30.89%), Postives = 112/246 (45.53%), Query Frame = 1 Query: 25 SWTRHWDPSSEHYFYYERSTGQTRWARPEFPAEVFDSPLAHQRSADDTMLEGVVLHQARDSDPHSSQGYAQQHQEDAMFHRKQQRDDGLPIRKKRGASKDTNRIYTDAQLNITEEPRKDYISIAKEYSITAPFRDTSGKQTCVICQNRKASGVFFPCEHKCACRRC------IDQGGFGKPGAVSKGG----SLCPVCCQQVVFVAPCKGGKKETELYWRWVEEVKPPLPRDFPHKFHMAAILLEI 732 +WT+H D +S H ++Y +TG T+W P A + P H L +R P AQ H + A+ + +P R A + T + E KDY S+A+EY+ +R+ G Q C++C ++ V FPC HKC C C +D + K A GG S CP+C +++ ++ G E E YW+WV EVKPPLPR F KF A + + + Sbjct: 65 NWTQHHDDASGHDYFYNDATGVTQWEPPVADA-LASVPQPH-------------LPASRQPQPR-----AQAHPQPALC-----QPSLVPSAASRPAVAEPKLTATSETI---EPLNKDYASMAREYAQFKAYRNLDGDQFCLLCHKAPSTYVLFPCGHKCICEGCKKSNGVVDSATWQKAMANPNGGGELWSFCPLCNEEIKRISKHTG--TEYEDYWKWVNEVKPPLPRGFKTKFKSAHVEVRV 281
BLAST of mRNA_L-elsbetiae_contig1228.1884.1 vs. uniprot
Match: A0A835Z103_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z103_9STRA) HSP 1 Score: 93.2 bits (230), Expect = 3.730e-20 Identity = 42/116 (36.21%), Postives = 69/116 (59.48%), Query Frame = 1 Query: 334 IYTDAQLNITEEPRKDYISIAKEYSITAPFRDTSGKQTCVICQNRKASGVFFPCEHKCACRRCIDQGGFGKPGAVSKGG---SLCPVCCQQVVFVAPCKGGKKETELYWRWVEEVK 672 +Y + + +EP K+Y+ +A+EY +TAP+RD G+ ++A VFFPC HKC C +C+ Q + GA G ++CPVC +Q+ F++ GK E + YW+W++ V+ Sbjct: 7 VYVEGE---EDEPVKNYMQMAQEYHVTAPYRDLKGRA-------KEARMVFFPCGHKCMCEKCVMQHKYSCAGATDAGEDSWTMCPVCAEQIKFMSLFIDGKTEVQRYWQWIDAVE 112
BLAST of mRNA_L-elsbetiae_contig1228.1884.1 vs. uniprot
Match: A0A7S2S490_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S490_9STRA) HSP 1 Score: 96.3 bits (238), Expect = 3.830e-20 Identity = 56/156 (35.90%), Postives = 83/156 (53.21%), Query Frame = 1 Query: 292 PIRKKRGASKDTNRIYT-DAQLNITEEPRKDYISIAKEYSITAPFRDTSGKQTCVICQNRKASGVFFPCEHKCACRRCIDQGGF--GKPGAVSKGG-SLCPVCCQQVVFVAPCKGGKKETELYWRWVEEVKPPLPRDFPHKFHMAAILLEIKSEPD 747 P R+KR A K +++ A+LN KDY+S+A+EY+ + P+R+ SG Q C++C R + V FPC HKC C C F + +G CP+C +++ + P G E YW WV EVKP LP F + ++ +LE S P+ Sbjct: 72 PKRQKRRAGKSSSQNNAPQARLN------KDYLSMAREYTQSEPYRNLSGAQPCLVCGTRASELVLFPCAHKCLCTACAKSQHFVESSRAKLEEGAWCFCPLCNEEIKRILPHTG--TEVADYWTWVHEVKPVLPGGFRSRLSQSSQMLEHGSIPN 219
BLAST of mRNA_L-elsbetiae_contig1228.1884.1 vs. uniprot
Match: A0A1W0A713_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A713_9STRA) HSP 1 Score: 80.5 bits (197), Expect = 3.730e-14 Identity = 47/146 (32.19%), Postives = 70/146 (47.95%), Query Frame = 1 Query: 319 KDTNRIYTDAQLNITEEPRKDYISIAKEYSITAPFRDTSGKQ-----TCVICQNRKASGVFFPCEHKCACRRCIDQGGFGKP--GAVSKGGS---LCPVCCQQVVFVAPCKGGKKETELYWRWVEEVKPPLPRDFPHKFHMAAILL 726 K+ + +A ++ DY++ +Y++ P+ + K C +C+ K VFFPCEHKCAC +C+ G+ P SKG S CP+C Q V+ + G+ E + YW+W EV P LP F F A L Sbjct: 83 KEKKLLSNEALRRQSKSMTADYMTDLDKYNMAKPYSRRANKTFEPSVLCAVCKMNKCEMVFFPCEHKCACNKCL---GYQPPVIKTPSKGISWLHACPICFQDVIIMFEDSNGE-EIDFYWKWGGEVTPQLPTKFVSTFKRAGSKL 224
BLAST of mRNA_L-elsbetiae_contig1228.1884.1 vs. uniprot
Match: A0A1V9Z5I3_9STRA (RING-type domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z5I3_9STRA) HSP 1 Score: 72.0 bits (175), Expect = 4.270e-11 Identity = 49/171 (28.65%), Postives = 73/171 (42.69%), Query Frame = 1 Query: 334 IYTDAQLNITEEPRKDYISIAKEYSITAPFRDTSGKQ-----TCVICQNRKASGVFFPCEHKCACRRCIDQGGFGKPGAVSKGGS------LCPVCCQQVVFVAPCKGGKKETELYWRWVEEVKPPLPRDFPHKFHMAAILL------------EIKSEPDSHKTWDKPPT 777 I A ++ DY+S + Y++ P+ K C++C+ K + VFFPCEHKC C +C+D +P G CPVC + V + G ETELYW+ ++ P LPR+F F L E+ + + T D+P T Sbjct: 98 IKLQALRRQSQSMTTDYMSDVEMYNMAKPYSRRPDKTFDPTAVCIVCKTNKITMVFFPCEHKCLCNKCLDY----RPPVTQIAGKGAQWPHACPVCYRDVSVMFENTG--HETELYWK--QDEVPRLPRNFVATFKRTGSRLNTAPSMVFPTLDELSTHEEVDATDDRPKT 260
BLAST of mRNA_L-elsbetiae_contig1228.1884.1 vs. uniprot
Match: T0S352_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0S352_SAPDV) HSP 1 Score: 67.0 bits (162), Expect = 2.710e-9 Identity = 54/176 (30.68%), Postives = 79/176 (44.89%), Query Frame = 1 Query: 247 EDAMFHRKQQRDDGLPIRKKRGASKDTNRIYTDAQLNITEEPRK------DYISIAKEYSITAPFRDTSGKQ-----TCVICQNRKASGVFFPCEHKCACRRCIDQGGFGKP--GAVSKGGS---LCPVCCQQVVFVAPCKGGKKETELYWRWVEEVKPPLPRDFPHKFHMAAILL 726 +D + R++ +D PI + R T + QL + R+ DYI+ Y+ PF S K C++C+ +K VFFPCEHKC C +C+D + P + KG CPVC + V + G E + YW+ ++EV P LP F F A L Sbjct: 66 DDLISSRRRNSEDEQPIPELRSTPLATALSEKEKQLKLQALRRQSQSMTTDYITDIDRYNSAKPFSRRSDKTFDPEARCIMCKTQKILMVFFPCEHKCVCNKCLD---YHPPVTKTIGKGAHWPHACPVCYRDVTVMFENTGF--EVDHYWK-LDEV-PHLPNSFVTSFKRAGSRL 234
BLAST of mRNA_L-elsbetiae_contig1228.1884.1 vs. uniprot
Match: A0A067CQV5_SAPPC (RING-type domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CQV5_SAPPC) HSP 1 Score: 60.5 bits (145), Expect = 4.700e-7 Identity = 43/142 (30.28%), Postives = 60/142 (42.25%), Query Frame = 1 Query: 334 IYTDAQLNITEEPRKDYISIAKEYSITAPFRDTSGKQ-----TCVICQNRKASGVFFPCEHKCACRRCIDQGGFGKPGAVSKGGS------LCPVCCQQVVFVAPCKGGKKETELYWRWVEEVKPPLPRDFPHKFHMAAILL 726 I +A ++ DYIS + Y+ PF K C++C+ K VFFPCEHKC C +C++ P G CPVC + V + G E + YW+ ++EV P L F F A L Sbjct: 95 IKFEALRRQSQSMTTDYISDVERYNSAKPFSRRPDKTFDPEARCIMCKTHKIHMVFFPCEHKCVCNKCLEY----HPPVTKIAGKGAHWPHACPVCYRDVTIMFENTGF--EVDHYWK-LDEV-PHLSNSFVTTFKRAGSRL 228 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1228.1884.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1228.1884.1 >prot_L-elsbetiae_contig1228.1884.1 ID=prot_L-elsbetiae_contig1228.1884.1|Name=mRNA_L-elsbetiae_contig1228.1884.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=267bp MRGIAPVGSWTRHWDPSSEHYFYYERSTGQTRWARPEFPAEVFDSPLAHQback to top mRNA from alignment at L-elsbetiae_contig1228:20291..22304- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1228.1884.1 ID=mRNA_L-elsbetiae_contig1228.1884.1|Name=mRNA_L-elsbetiae_contig1228.1884.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2014bp|location=Sequence derived from alignment at L-elsbetiae_contig1228:20291..22304- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1228:20291..22304- >mRNA_L-elsbetiae_contig1228.1884.1 ID=mRNA_L-elsbetiae_contig1228.1884.1|Name=mRNA_L-elsbetiae_contig1228.1884.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1602bp|location=Sequence derived from alignment at L-elsbetiae_contig1228:20291..22304- (Laminarionema elsbetiae ELsaHSoW15)back to top |