mRNA_L-elsbetiae_contig12227.1849.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12227.1849.1
Unique NamemRNA_L-elsbetiae_contig12227.1849.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig12227.1849.1 vs. uniprot
Match: D8LGQ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGQ5_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 3.660e-14
Identity = 73/158 (46.20%), Postives = 80/158 (50.63%), Query Frame = 1 
Query:  286 RRRIKRARVALEEAFDELGRSAADELGLAPPAYMDLDFGSTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIIPPIPADGVLERLEEAVEEGFDVVGGAXXXXXXXXXESVLALDVRMGRARASLETALNELGLTVPSES 759
            RRRIKRARVALE+A DELG   +       PAYM+LDFG                                                     P   D +LERLEEAVEEGF      XXXXXXXXX  VLALD R+ RARAS+ETALNELGLTVPS+S
Sbjct:  130 RRRIKRARVALEDALDELGLGGS-------PAYMNLDFGPPDGGGSKKKEVEEVVGKEGRGSGWLSQWRKRGGGA-----------------PATPDEMLERLEEAVEEGFXXXXXXXXXXXXXXXXXVLALDDRVERARASVETALNELGLTVPSKS 263
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BLAST of mRNA_L-elsbetiae_contig12227.1849.1 vs. uniprot
Match: A0A6H5JG81_9PHAE (GT4 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG81_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 2.050e-13
Identity = 79/156 (50.64%), Postives = 85/156 (54.49%), Query Frame = 1 
Query:  292 RIKRARVALEEAFDELGRSAADELGLAPPAYMDLDFGSTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIIPPIPADGVLERLEEAVEEGFDVVGGAXXXXXXXXXESVLALDVRMGRARASLETALNELGLTVPSES 759
            RIKRARVALE+A DELG           PAYMDLDFG            XXXXXXX                                  P   D +L+ LEEAVEEGF+ VG  XXXXXXXXX  VLALD R+ RARAS+E ALNELGLTVPSES
Sbjct:  234 RIKRARVALEDALDELGLGGW-------PAYMDLDFGPPDGGGSKEEAEXXXXXXXVVGKEGRGSGWLSQWRKRGGGA------------PATPDEMLDLLEEAVEEGFEAVGXXXXXXXXXXXXXVLALDDRVERARASVEAALNELGLTVPSES 370
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12227.1849.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LGQ5_ECTSI3.660e-1446.20Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JG81_9PHAE2.050e-1350.64GT4 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12227contigL-elsbetiae_contig12227:2186..5222 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDigalactosyldiacylglycerol synthase, family GT4
Ec32 orthologEc-07_005410.1
Exons3
Model size847
Cds size846
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12227.1849.1prot_L-elsbetiae_contig12227.1849.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12227 2187..5222 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815421.7832272-CDS-L-elsbetiae_contig12227:2186..22971622815421.7832272-CDS-L-elsbetiae_contig12227:2186..2297Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12227 2187..2297 -
1691682889.8897202-CDS-L-elsbetiae_contig12227:2186..22971691682889.8897202-CDS-L-elsbetiae_contig12227:2186..2297Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12227 2187..2297 -
1622815421.8026507-CDS-L-elsbetiae_contig12227:3879..40851622815421.8026507-CDS-L-elsbetiae_contig12227:3879..4085Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12227 3880..4085 -
1691682889.899812-CDS-L-elsbetiae_contig12227:3879..40851691682889.899812-CDS-L-elsbetiae_contig12227:3879..4085Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12227 3880..4085 -
1622815421.82392-CDS-L-elsbetiae_contig12227:4693..52221622815421.82392-CDS-L-elsbetiae_contig12227:4693..5222Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12227 4694..5222 -
1691682889.9091105-CDS-L-elsbetiae_contig12227:4693..52221691682889.9091105-CDS-L-elsbetiae_contig12227:4693..5222Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12227 4694..5222 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12227.1849.1

>prot_L-elsbetiae_contig12227.1849.1 ID=prot_L-elsbetiae_contig12227.1849.1|Name=mRNA_L-elsbetiae_contig12227.1849.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=282bp
GEPAAATAAEESRTTFLHPSSDEQDDSDNSRATTTTNAAAEKIPGERKEG
AESAVAAAAAGNGNVSGEARKSGGGGGGGDKAAGPYSAAGAAEAARRRIK
RARVALEEAFDELGRSAADELGLAPPAYMDLDFGSTPPPPPPPSPAAVAE
DEEGGPVASSKEGGGRGGWLRQWRSRDGGGGGGGIIPPIPADGVLERLEE
AVEEGFDVVGGAVEESFEAVGESVLALDVRMGRARASLETALNELGLTVP
SESSTAAAAAAKVEAPGVETREEGGATVEDKE
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mRNA from alignment at L-elsbetiae_contig12227:2186..5222-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12227.1849.1 ID=mRNA_L-elsbetiae_contig12227.1849.1|Name=mRNA_L-elsbetiae_contig12227.1849.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3037bp|location=Sequence derived from alignment at L-elsbetiae_contig12227:2186..5222- (Laminarionema elsbetiae ELsaHSoW15)
GGAGAACCGGCAGCGGCGACAGCGGCGGAGGAGAGTAGAACAACGTTCCT
GCACCCGAGTTCGGACGAACAGGACGATTCTGACAACAGCCGGGCGACAA
CAACAACAAACGCGGCGGCGGAAAAGATACCCGGCGAGAGAAAGGAGGGC
GCCGAGAGTGCTGTCGCGGCGGCGGCGGCGGGAAACGGCAACGTTTCCGG
TGAGGCAAGGAAAAGTGGCGGCGGTGGCGGCGGCGGCGACAAGGCTGCTG
GCCCGTATTCGGCCGCGGGGGCGGCAGAGGCGGCCCGGCGGCGCATCAAG
CGCGCGCGCGTGGCGCTGGAGGAGGCATTCGATGAGCTCGGCCGGTCGGC
GGCGGATGAGCTGGGGTTGGCGCCGCCGGCGTACATGGACTTGGATTTCG
GGTCCACCCCCCCTCCTCCCCCTCCTCCATCTCCTGCTGCGGTTGCGGAG
GACGAGGAAGGGGGCCCGGTGGCGTCTTCGAAGGAGGGGGGGGGGCGGGG
GGGGTGGCTGCGCCAGTGGAGAAGTCGTGGTGGGTGGTGCCTCGGTGTCG
TGCTGTTGTGGACTTTCTCTGTCATGATGATGGATGTTGTGTTGATGTGT
GTAAGTGCTGCTGCTGTGATGGTGGTGGTAGTGGTGGCCGTGCCCGGCTG
TGGTGGAGCCCACAAGGGACCTCGTATTTTCTTTTTTTGTACGTGATGGT
TTGACTTGCACAAGTAAACGTTGCGTCCTTCTTACAATAATAGGAGACAA
GCCAACGGCATATGTTTTCGCTTTGCACCGTTGCTTTGCTGGCTGGCCAG
TGCTACAATAGACACAATGGACGTGATTGCCTAGGTGCTTTCCTGGCGTC
CAGTCAGCCCAGCCCGTCTGTCATGCACTCGGACGGTACAGTAGGTACAT
AATTCACGACCGAAAATAAGATAAGAAAATAAAAGGAAAGAAAAGAGAAG
GAAAGGAAAGGAAACGAAACGAAACGAAACGAAAGGAAAGGAAAGGAAAG
GAAAGGAAAGGAAAGGAAAGGAAAGGAAAGAAAAACTAAAAAAAGTAGAA
GAAACAATCCAAAAACCAACAAACGATTCAGCAGATTTCCAAGCACTTAC
TTAGATACGGAAAACGGAAAAATGGACCTTGCGACAGACGGCGGCGGCGG
CGGCGGCGGCATCATCCCGCCCATCCCGGCAGATGGAGTTCTGGAGCGGC
TTGAAGAGGCCGTGGAGGAGGGGTTCGACGTGGTTGGGGGGGCAGTCGAG
GAGAGCTTCGAGGCTGTAGGGGAGAGCGTGCTTGCGCTTGATGTCCGGAT
GGGCAGGGCAAGGGCTTCCCTGGAGACGGCCTTGAACGAGCTGGTGAGTT
GGGGGGGGGGGGGGGGGGGGGGGGGGGGAAAGGCGGGGTGGCAGTGGGGG
GGATGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCCGAA
AACCCGGCCGGCAAGTGTGATTGATACGAGGGGGCGCGGGGGAGGAGGGG
GGGGGATAGGTTTTGTTCCATTTGTTGAGTCTGGAGGTGGTTTGGTCGGT
GACTCTCTGCAAGCGTGCGGGCGCGTATTTCGTGGCGATGCATGCGCGCT
GGGGAGGTGTGTGTGTGGGGGGACAATCAGTAGAGACAGGCCGGCAGATA
CAGGCAGGCAGGCAGGTACAGGCAGACAGACAGGCACGCACACCGATTAT
AGTAGAGAGACGGATTGGTAGAGGAAGGTGTATCGAGGCCGAGATGAGAG
TGAGATAAGACGGGAGACGGGCACCGCTCGTTGATCTGCCGGGCCCCCGG
AAGACCCAGATGTGATCAGAGTTGAGGACACTAAACACACGAATGTATGT
ACATGCTATATTATATGAATATATATAATCAACACTACAGTAGATTGCTA
CTTGTACTTCTGTATACTTGGAAGTATGAGGATAGAGAAGTGGGCGAAGG
GGCCTGAAGCGCGAAAGGGCTTTGTACACGGTGGTCAGTTTTTTACTACA
GTTAATGCTGGGCTCGTTTTACTTTGTGACTTCATTCTCGTCCATTTTAC
GTGTATCTGTTCATACTTCCTCTGTCCCATAAGTAAAGGTCGTTATGGGG
GGCAGATCATACCTCACCAATGGAGTTGCCTAGGATGCTGTAGTTATGTT
TGGGGGAAAGCTATAGATATGATGATGCTCATAAAAAAAATACAAAAATC
AAATCCGTGTTTTAAATACCGAGAATTATAAATAGTTGGACAAATTCGAC
CAAATCTAGGCCGATTTCAGCCATTTTGAACCGTTTTCGGCCGAATTTGC
ACACATGTTGCCTTTCATTGAGGCAAACGAAGCCGGTAGCGAGGTGTAGG
CGTCGTCCATCACTGATGTCACTGGTGAAGCGGGTACAATAGGCAAAATT
TGCATTTTTTTAACGTTTTTCAGTCAATGTCCGGATTTTCAATTTTCTTC
TCTGTTTTCCGTAAAAGGGCCAGATAATGTATGGCCTTTTTTTCAGGCCA
ACTATTTTGAAAATAAAAGTTTTTTGGTCGATTATGCATGCAGGGTGATG
CGTGCAAAAAATATAAATACGGTTTTCAACCCCAAAAACATCGTAGGTTC
CAAAAAAGTTAACGCCGAGTGCATCAGACACCGTTAACTGTGTCATAAAG
ACTTTTACTTAGGGGACGGAAGGAAGTATGTATATATGTATACATACATG
TATTTTTTTTTTCCCTCCCATTATTGGCATATTCGTCGTGTGCCCCACCT
GCCCCCATACTCCACTACGACTAGCTAGACGATCCAACCGGGGTCACAAT
CGCGTGTATGCGTCCATCTTCTCTTAAATAGTATTTTCACACATGCCGCG
CATATAATAAATATGTACATTTGTGTCGTGTGTGTGTGTGTGCGTGTGTG
TGTGTGTGTGTGTGTGTGTGTCCAGGGCCTCACGGTCCCATCCGAGTCAT
CCACTGCAGCAGCAGCAGCAGCGAAGGTAGAAGCACCGGGAGTAGAAACA
CGAGAGGAGGGGGGCGCGACGGTGGAAGACAAAGAGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12227:2186..5222-

>mRNA_L-elsbetiae_contig12227.1849.1 ID=mRNA_L-elsbetiae_contig12227.1849.1|Name=mRNA_L-elsbetiae_contig12227.1849.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1692bp|location=Sequence derived from alignment at L-elsbetiae_contig12227:2186..5222- (Laminarionema elsbetiae ELsaHSoW15)
GGAGAACCGGCAGCGGCGACAGCGGCGGAGGAGAGTAGAACAACGTTCCT
GCACCCGAGTTCGGACGAACAGGACGATTCTGACAACAGCCGGGCGACAA
CAACAACAAACGCGGCGGCGGAAAAGATACCCGGCGAGAGAAAGGAGGGC
GCCGAGAGTGCTGTCGCGGCGGCGGCGGCGGGAAACGGCAACGTTTCCGG
TGAGGCAAGGAAAAGTGGCGGCGGTGGCGGCGGCGGCGACAAGGCTGCTG
GCCCGTATTCGGCCGCGGGGGCGGCAGAGGCGGCCCGGCGGCGCATCAAG
CGCGCGCGCGTGGCGCTGGAGGAGGCATTCGATGAGCTCGGCCGGTCGGC
GGCGGATGAGCTGGGGTTGGCGCCGCCGGCGTACATGGACTTGGATTTCG
GGTCCACCCCCCCTCCTCCCCCTCCTCCATCTCCTGCTGCGGTTGCGGAG
GACGAGGAAGGGGGCCCGGTGGCGTCTTCGAAGGAGGGGGGGGGGCGGGG
GGGGTGGCTGCGCCAGTGGAGAAGTCGTGGGAGAACCGGCAGCGGCGACA
GCGGCGGAGGAGAGTAGAACAACGTTCCTGCACCCGAGTTCGGACGAACA
GGACGATTCTGACAACAGCCGGGCGACAACAACAACAAACGCGGCGGCGG
AAAAGATACCCGGCGAGAGAAAGGAGGGCGCCGAGAGTGCTGTCGCGGCG
GCGGCGGCGGGAAACGGCAACGTTTCCGGTGAGGCAAGGAAAAGTGGCGG
CGGTGGCGGCGGCGGCGACAAGGCTGCTGGCCCGTATTCGGCCGCGGGGG
CGGCAGAGGCGGCCCGGCGGCGCATCAAGCGCGCGCGCGTGGCGCTGGAG
GAGGCATTCGATGAGCTCGGCCGGTCGGCGGCGGATGAGCTGGGGTTGGC
GCCGCCGGCGTACATGGACTTGGATTTCGGGTCCACCCCCCCTCCTCCCC
CTCCTCCATCTCCTGCTGCGGTTGCGGAGGACGAGGAAGGGGGCCCGGTG
GCGTCTTCGAAGGAGGGGGGGGGGCGGGGGGGGTGGCTGCGCCAGTGGAG
AAGTCGTGACGGCGGCGGCGGCGGCGGCGGCATCATCCCGCCCATCCCGG
CAGATGGAGTTCTGGAGCGGCTTGAAGAGGCCGTGGAGGAGGGGTTCGAC
GTGGTTGGGGGGGCAGTCGAGGAGAGCTTCGAGGCTGTAGGGGAGAGCGT
GCTTGCGCTTGATGTCCGGATGGGCAGGGCAAGGGCTTCCCTGGAGACGG
CCTTGAACGAGCTGACGGCGGCGGCGGCGGCGGCGGCATCATCCCGCCCA
TCCCGGCAGATGGAGTTCTGGAGCGGCTTGAAGAGGCCGTGGAGGAGGGG
TTCGACGTGGTTGGGGGGGCAGTCGAGGAGAGCTTCGAGGCTGTAGGGGA
GAGCGTGCTTGCGCTTGATGTCCGGATGGGCAGGGCAAGGGCTTCCCTGG
AGACGGCCTTGAACGAGCTGGGCCTCACGGTCCCATCCGAGTCATCCACT
GCAGCAGCAGCAGCAGCGAAGGTAGAAGCACCGGGAGTAGAAACACGAGA
GGAGGGGGGCGCGACGGTGGAAGACAAAGAGGGCCTCACGGTCCCATCCG
AGTCATCCACTGCAGCAGCAGCAGCAGCGAAGGTAGAAGCACCGGGAGTA
GAAACACGAGAGGAGGGGGGCGCGACGGTGGAAGACAAAGAG
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