mRNA_L-elsbetiae_contig12223.1848.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12223.1848.1
Unique NamemRNA_L-elsbetiae_contig12223.1848.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig12223.1848.1 vs. uniprot
Match: A0A6H5K5B5_9PHAE (BAH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K5B5_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 2.740e-20
Identity = 55/89 (61.80%), Postives = 66/89 (74.16%), Query Frame = 2 
Query:   17 GDAMAPPGPEAETSCVSQVFMLSVKLTLIPELFDKFVMALTDYRRQRILIHELVDVVSECFDHREVREMRLVEEFNTFLPPGHAVHALR 283
            G+AMAP  P+AET  V  VFM   K TL PE FDKFV AL+ YR QR+ I ELVDVV +CF+H E RE++LV+EFN+FLPPG+AV   R
Sbjct: 1194 GEAMAPR-PQAETGSVLHVFMDRCKATLTPERFDKFVSALSQYREQRLSIGELVDVVGQCFNHHEEREVKLVKEFNSFLPPGNAVKITR 1281
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12223.1848.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K5B5_9PHAE2.740e-2061.80BAH domain-containing protein n=2 Tax=Ectocarpus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12223contigL-elsbetiae_contig12223:1323..4402 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1599
Cds size282
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12223.1848.1prot_L-elsbetiae_contig12223.1848.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12223 1348..3110 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815421.704133-UTR-L-elsbetiae_contig12223:1322..13471622815421.704133-UTR-L-elsbetiae_contig12223:1322..1347Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12223 1323..1347 +
1691682889.837557-UTR-L-elsbetiae_contig12223:1322..13471691682889.837557-UTR-L-elsbetiae_contig12223:1322..1347Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12223 1323..1347 +
1622815421.7495787-UTR-L-elsbetiae_contig12223:3110..44021622815421.7495787-UTR-L-elsbetiae_contig12223:3110..4402Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12223 3111..4402 +
1691682889.8811276-UTR-L-elsbetiae_contig12223:3110..44021691682889.8811276-UTR-L-elsbetiae_contig12223:3110..4402Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12223 3111..4402 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815421.716192-CDS-L-elsbetiae_contig12223:1347..14061622815421.716192-CDS-L-elsbetiae_contig12223:1347..1406Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12223 1348..1406 +
1691682889.8470452-CDS-L-elsbetiae_contig12223:1347..14061691682889.8470452-CDS-L-elsbetiae_contig12223:1347..1406Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12223 1348..1406 +
1622815421.7291718-CDS-L-elsbetiae_contig12223:2366..24931622815421.7291718-CDS-L-elsbetiae_contig12223:2366..2493Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12223 2367..2493 +
1691682889.8560965-CDS-L-elsbetiae_contig12223:2366..24931691682889.8560965-CDS-L-elsbetiae_contig12223:2366..2493Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12223 2367..2493 +
1622815421.7398875-CDS-L-elsbetiae_contig12223:3014..31101622815421.7398875-CDS-L-elsbetiae_contig12223:3014..3110Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12223 3015..3110 +
1691682889.871028-CDS-L-elsbetiae_contig12223:3014..31101691682889.871028-CDS-L-elsbetiae_contig12223:3014..3110Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12223 3015..3110 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12223.1848.1

>prot_L-elsbetiae_contig12223.1848.1 ID=prot_L-elsbetiae_contig12223.1848.1|Name=mRNA_L-elsbetiae_contig12223.1848.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=94bp
MAPPGPEAETSCVSQVFMLSVKLTLIPELFDKFVMALTDYRRQRILIHEL
VDVVSECFDHREVREMRLVEEFNTFLPPGHAVHALRNAVRLEE*
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mRNA from alignment at L-elsbetiae_contig12223:1323..4402+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12223.1848.1 ID=mRNA_L-elsbetiae_contig12223.1848.1|Name=mRNA_L-elsbetiae_contig12223.1848.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3080bp|location=Sequence derived from alignment at L-elsbetiae_contig12223:1323..4402+ (Laminarionema elsbetiae ELsaHSoW15)
GCTGTCACAACACCGGGGAGACGCAATGGCGCCGCCGGGACCAGAGGCAG
AAACCTCCTGCGTCTCGCAGGTGTTCATGCTGAGGTGCGTGTATGAAAGA
TTCAGGCGTCGATGCTTGGCCGAGAAAAAAATGTGCTGTCAAATGCAATT
GATCACAGCAGTTGGGGGCGTGGGGGGGCATGCATGAGGGCAAGGGTGCT
TGGTGTCGTGAACTACAATACCTCTGTTGTTGGGGCGTGAAGAACCAAAC
GCAGAGGCTGTGGCTATCGCCTTCGGTACCGGTTGCTCGGAAAGTCAATA
CAGCAGTTTGTGAGGTTTCATCGGATCGGAGGATCGGAGGCGAGCCGGGC
CCCTTACTAGTCTACGTACATACCGTGGGGGTGGCAAAAGAACACCGAGG
CTCTTCAGTAAAAATGCTCAAAGATGGGTTGAGGCGGCACTACTACCGGG
TAGCTCGCGCCTATTGTAGGCCTTCTTGTACGGCGGTATTGCCTAGGCGG
ATGTGGGAGGGGTGCGTTTCAGGTTGGTGGGACGGAACGGATGATTTGTT
CTTCGTCGAATTCCGCACGAGGTACGCGGGTAAGTGCTTCTGGGGTTACA
TAGACCGAGGGGCTTGGACCCCGAGATGGTAACTATGTGAATCGTGAGTG
CGAAATATTAATATTTGCAGGGGTTGTCTCGTCGCCCACTCATGTAGCAC
CGTTTAGACGACCTTGGCGGTGCAGCTTGCTCTGGCTCCCGTTTACGCCC
ACCAAGGCAGGCAACACGGTTTGTGACGCGCTGGAGAAGACGGCGGGGAG
GGTCGAAAGCGGTCCACGCGGTCGATGGCTTGATGCGGTCGGAAGCGCCT
GCCCTGCCCTGCCCTGCCCTGCCCTACCCATAAATGCACCGACGAGTGAC
ACCAGCAAAGAAAAGCTCGCTCTGTACGGTACCACCCGACGGCATATTTG
TGTCTCTTGATGTATGATATCTTCGTAGTAGACCCCTGTACTGTCCGTCT
GCAATTGCCCCCAGCCCACCCCTTACCTCACCTCTATCCCGCAGCGTCAA
GCTCACGCTCATCCCGGAACTGTTCGACAAGTTTGTGATGGCGTTGACTG
ATTATCGTCGGCAGCGTATATTGATCCATGAGCTCGTCGATGTGGTCAGC
GAGTGCTTCGACCATCGCGAGGTATGTATGAATGCAGAAAGCGGGTCATG
GAATCAATCGAATCAGCCGTCGTCTTGCTATTTCCCTTTTGATCCCTCCA
AAAGTGATTGCGCAGTTTCTGACTGAGCCCGTGTTATTTGGGGCATTATT
GGTCCCTCATTGCTTGTCCTTGGTTTGTTGTTGCGAGCCGCGATCAACAT
GGTGCGGAACCGTTGATTAGATTAGAGTTAGGGTTAGGGTTAGGGTTAAC
CCTAACCCTAACCCTAACCCTAACCCTAACCCTCTTTTTTGATTCGCACC
CTAGTGTCTTCGTGCCGGATGTGAAGCTGCCCCTGTCGTTCTTTCCCTCC
TTGCACCTCACTTGGTAAAACAAATTAGGCTGCACGTGTTTAATTCTTAA
ATATTAATATCATTAATTTGATTTGGTTGAGGTCTTGCGGGAGTACGGCT
CGAGTAGCCCCCCCCCCACTCATTCGCTAGGCCCCACGACCATGTGTTTA
TTATTATATCCGCGTGCCCCCCCCCCGTTGGACGCGGTGCAGGTACGGGA
GATGAGACTGGTGGAGGAGTTCAATACGTTCCTTCCGCCTGGGCACGCGG
TGCACGCACTGAGGAATGCCGTCCGCTTAGAAGAGTGAACGGCAACGTTG
AAGGCACGCCGAGGAGGGGCGCTTTCGAGGTCCACGTACGATGTTCCGTC
TGCGAAGTCCCATCTGATAGGTGACAACGAAGCCGGCGATCGCTCCGCTG
TTTGGCCGCGAGGGGTGGTTCGGCATCCGGTGTAGGAGAGGGGGCCGAAA
AATTCATCAGTAACTGTCGAGGGGGGGGGGGCAACCAGCGCCCCAGAGAA
GGTCGAAAGCTCAACCCTCATCTAGGGTATTCGATGACGTTTCGGCACCT
TTTGATTGACTGCTGGGTCTCGTGGCGGATGTATGTGTGTAGGTTTAGGT
TACAAATACGGCTGAGATTTCATTGGTTCGTGCCATTTGGACTGGGTGGA
GTTCGCGTCTCAGCCGATGTGAAGTCGTGGGCACGCGTGACTTGATTCGT
GGGGCGAAGTGATTCGTTCGAGTCCATGAGGGAGGAGTTCCATACTTCGA
AGTATAGCATGTGCGACTGCACGCACCCCGGCGACCAGGCTTGCTCCGGC
TCTGTCGTCACCTGTATCTATCTATCTATCTATCGGGAGTATCTATGTAT
CTATATGCATCCCGAGGTCCGAGGTCCGCAGGGTGGGAGGCAGCCTGAGG
GCACTGCCGCCACTGGCCCGACACGAAAGATGCTTGCTTCACGGCTGTCG
CCGTCGCACTGTTGGCGAGGTTGAAAGTGTTAGCCATTTGCTCGCTGCAC
CCCTGGAAGGTTGGTTGGTATATAGGAGCTCAAAACCCCCCAGCAGGAGC
TGTTCTTCTCTGTCGGCGTTACTGGCGTTGGTCGTGTTCTAAGCGCACCG
CGGGGAAAAGGCGAATCGCGGAGGGGAGAGGGGGTGGGAGGCGTGGTATT
TTTGATGCGACTGCAGCACGCACTACTACAGAGCGGATGCTTGTTCCCCT
TTGCTCTCTGCGTACGACCAGCTGCGCAGTCGAATTCATCTCGACCCGTC
GGTGTTGCTTAGCCGCAAAAGAGGTTAGTTAAGGGGTGGTCAGTTGGCCT
GTTTCGAAAGGAGACGTGGTGGAGCCGTTGGTGGATGCGTGGGTGTACTA
GTAAGTCTGTTGCTGTATTGTGTATTATCTACATAAATTGGTGCTGTTTT
TTGTCGTGGTGAAGCAGATGGGCTGGTGCCTTTTTGTTACATATTTCGCT
TTCTTTCTCTGCACGACCAGGAGTTGAGTGAAAAGTGTCAGTTTGCGCTT
GAAACTGTCGAGCTACGGTCCTTGATTTTGTGCAACATATACATGCGTGT
ACACCGGAAGTCCCAGGTTGAACGCTGTGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12223:1323..4402+

>mRNA_L-elsbetiae_contig12223.1848.1 ID=mRNA_L-elsbetiae_contig12223.1848.1|Name=mRNA_L-elsbetiae_contig12223.1848.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=564bp|location=Sequence derived from alignment at L-elsbetiae_contig12223:1323..4402+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGCCGCCGGGACCAGAGGCAGAAACCTCCTGCGTCTCGCAGGTGTT
CATGCTGAGATGGCGCCGCCGGGACCAGAGGCAGAAACCTCCTGCGTCTC
GCAGGTGTTCATGCTGAGCGTCAAGCTCACGCTCATCCCGGAACTGTTCG
ACAAGTTTGTGATGGCGTTGACTGATTATCGTCGGCAGCGTATATTGATC
CATGAGCTCGTCGATGTGGTCAGCGAGTGCTTCGACCATCGCGAGCGTCA
AGCTCACGCTCATCCCGGAACTGTTCGACAAGTTTGTGATGGCGTTGACT
GATTATCGTCGGCAGCGTATATTGATCCATGAGCTCGTCGATGTGGTCAG
CGAGTGCTTCGACCATCGCGAGGTACGGGAGATGAGACTGGTGGAGGAGT
TCAATACGTTCCTTCCGCCTGGGCACGCGGTGCACGCACTGAGGAATGCC
GTCCGCTTAGAAGAGTGAGTACGGGAGATGAGACTGGTGGAGGAGTTCAA
TACGTTCCTTCCGCCTGGGCACGCGGTGCACGCACTGAGGAATGCCGTCC
GCTTAGAAGAGTGA
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