mRNA_L-elsbetiae_contig12216.1845.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12216.1845.1
Unique NamemRNA_L-elsbetiae_contig12216.1845.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig12216.1845.1 vs. uniprot
Match: D8LH17_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH17_ECTSI)

HSP 1 Score: 114 bits (284), Expect = 8.630e-27
Identity = 66/99 (66.67%), Postives = 77/99 (77.78%), Query Frame = 1 
Query:   79 QAQQDKEAAQNELVKERLFDLERSVEMSDWSERKLAKENEGLQGLISRNRKRFQKELARLGDASAELQEXXXXXXXXXXXXXQEKKTVRELTNQVNMLQ 375
            QA QDKE AQ ELVKERLFDLERSVEM++WSERKLAKENEGLQGLISRNR+RF KELARL  ASA+L++             +E++TV+EL NQV  L+
Sbjct:  343 QAIQDKEEAQTELVKERLFDLERSVEMAEWSERKLAKENEGLQGLISRNRQRFHKELARLTVASADLEDKSNALKDLEAVYDRERQTVKELGNQVETLK 441
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12216.1845.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LH17_ECTSI8.630e-2766.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12216contigL-elsbetiae_contig12216:684..2870 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-06_010870.1
Exons3
Model size396
Cds size396
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12216.1845.1prot_L-elsbetiae_contig12216.1845.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12216 684..2870 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815421.376907-CDS-L-elsbetiae_contig12216:683..8001622815421.376907-CDS-L-elsbetiae_contig12216:683..800Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12216 684..800 +
1691682889.595858-CDS-L-elsbetiae_contig12216:683..8001691682889.595858-CDS-L-elsbetiae_contig12216:683..800Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12216 684..800 +
1622815421.3889766-CDS-L-elsbetiae_contig12216:1879..19951622815421.3889766-CDS-L-elsbetiae_contig12216:1879..1995Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12216 1880..1995 +
1691682889.6073349-CDS-L-elsbetiae_contig12216:1879..19951691682889.6073349-CDS-L-elsbetiae_contig12216:1879..1995Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12216 1880..1995 +
1622815421.3988595-CDS-L-elsbetiae_contig12216:2707..28701622815421.3988595-CDS-L-elsbetiae_contig12216:2707..2870Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12216 2708..2870 +
1691682889.6151042-CDS-L-elsbetiae_contig12216:2707..28701691682889.6151042-CDS-L-elsbetiae_contig12216:2707..2870Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12216 2708..2870 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12216.1845.1

>prot_L-elsbetiae_contig12216.1845.1 ID=prot_L-elsbetiae_contig12216.1845.1|Name=mRNA_L-elsbetiae_contig12216.1845.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=132bp
RVPGLEGQLREEAEARELEKLRADELQAQQDKEAAQNELVKERLFDLERS
VEMSDWSERKLAKENEGLQGLISRNRKRFQKELARLGDASAELQEKSATL
NEVEASLSQEKKTVRELTNQVNMLQLMCYSF*
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mRNA from alignment at L-elsbetiae_contig12216:684..2870+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12216.1845.1 ID=mRNA_L-elsbetiae_contig12216.1845.1|Name=mRNA_L-elsbetiae_contig12216.1845.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2187bp|location=Sequence derived from alignment at L-elsbetiae_contig12216:684..2870+ (Laminarionema elsbetiae ELsaHSoW15)
AGAGTGCCCGGGCTGGAGGGTCAGTTGAGGGAGGAGGCGGAGGCCAGGGA
GTTAGAGAAGCTGAGGGCGGACGAGCTTCAAGCGCAGCAGGACAAGGAGG
CGGCGCAGAATGAGTTGGTGAGCGAGCCGGGTAGAGGTTGTTTCTGGTCT
CGGTAGTGCAGTACGGTATTGTTGTAGTCGCCTTTGTGCTAAATGTAAGT
GCAGCAGTGGTCATTGTTGCTGTTTATGCTCATTTTACTGTAGTGGTATG
GTAGCACATAGCTTTCGCGACTTTGTTGGTAATGGTTGTTGTTGTTGTTG
TTGCTGTCATACTTCATATTGTGTGGATTTTTGTGGTTCATGCTGTTTCC
GGTTTCAGCTTTTGTTGACGCCCATGTACATAGAGCGTTGGAAGTTCCGA
GACCATGTGTGCGCACGCACACAACACCGCTGCCCTGTTGGAACGACCGG
CTTGCTATCGCTAGCTAGTTCTTGGTTCTGACCGTGTGCATACTACTTAT
ATCAGTCGTGCTTCCACTTTGCGTCAAAGTAGGCAAAAGAGCTGTTCGGT
CCCGAGGGGTCGGGGTCGGTCGAGATGTAAGTGTTTACCCGAACAACGAC
AATTGCTTTATCGGTCGTGCTTCTATTTGTGCGATAAAATACATATGTAT
GTATAGGTGAAAAGAGCGGCTGTTCGGTCTCGAGCGGTCGGTCGAGTGCA
AATACTGTGCGCGAAAGATGACAAATGTGTTTTATCGGTCGTACTTCCGT
TTGTACGGTTTTAGAAAAGGCGAGAGAGCGGCAAACGGCAATTATATCGT
CGACCGTGCTTCCATTTTTACGATAAGAAATACTCCTTTAAAATAGGCGA
AATACCGGCTGTCCGTCCTCGAGCGGTCGGTCGAGTGTAATACATAGCCG
AAATACGTACGGCAACTTTACCATAGTAGGTGAGACAAGATACCACCCCC
CCCCCTGGATAGATTTTAAAGCTCGATTCCTCCTCCCCAGCAAGAAGAGT
TCAAGTGCCGAAAGGGGGTGGCGTTGGAAAGGTCTAGTCGAGGGCTGTCC
GAAAATGTGTCGTTTTGTGCCGGCATCCCGCCTCGTTACGGAGTAATGGA
GCTCTAAAAGTCGTCCCAGGATGGTGGGGGGGGTAGGTATATTGTGTCAC
ATACTGTGTTTATCGGTCGTGCTTCCATTTGTACGATCAAATACAGGTAA
AAGAGCGGCTGTTTGACCTCGAGCGGTCGGTCGAGATGTCCGACTGGAGC
GAGCGGAAGCTGGCCAAAGAGAACGAGGGGCTTCAGGGGTTAATCAGCCG
CAACCGGAAGAGGTACAACAGTAGCGTTTTCTTTTTCTTTTCTTTTTCCC
TCCCATTATTGGATTATTGGCTTATTTATCGTCTGCCCCACTGGCCCCCT
TCCTCCACTACGACTAGCTAGACGATCCAACCGGGGTCACACTGGAGGGG
GGAGAGTGGACCCCCTCCTGCGGTGCCTGCCTGTAATGTTTTTATCGCGA
GCAGGGTTCAGCACTCCCCAACCTCGTCAACAATGAAGTGTCTGTGCTGA
GCGCTTCTTTGTTTTTCCTTGACAATTGAGTACGAATAATGTTTAGGGTA
AATTATCCTGTGACCACGGGAATCGACCGCGTCAGTGTTGGATTAGTACG
GACTCATGGAGGTGTACTGGATAGAGAGATCGGAACAGTTTTTTATGTGA
AGAAAGCAACAAAAAAAAACTACTGCTGTGTCCCTACCTGTGTCTGTTAT
CCTTACTATCGGGAGGAAGTTGGATGGATGCCAAGATGGGAGAAACCTGA
CAGCCTCTTTTATTTTCCTTGTCGACTACTTAGCAAAAGGAAAATCATGT
CGAGATAGATACGTATCTACAAACCAACAACAACAATCAACAAAACGCCT
TAAAAAACAGTGACAACATTTTAAGTGGCACTTCAACCCCAAAAAGCCTC
AGCTGACCCCTCTTATCATCCCAACCCAAATTCGCGATTCGTGTGTCCTT
TGGTGACCGACCACGGTATCGTAGATTTCAGAAAGAGCTCGCTAGACTGG
GCGACGCGTCTGCCGAGCTGCAGGAGAAGTCGGCGACCCTCAACGAGGTG
GAGGCATCGCTGAGCCAGGAGAAAAAGACCGTCCGGGAGCTCACTAATCA
GGTTAATATGTTACAGTTGATGTGTTACTCCTTTTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12216:684..2870+

>mRNA_L-elsbetiae_contig12216.1845.1 ID=mRNA_L-elsbetiae_contig12216.1845.1|Name=mRNA_L-elsbetiae_contig12216.1845.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=792bp|location=Sequence derived from alignment at L-elsbetiae_contig12216:684..2870+ (Laminarionema elsbetiae ELsaHSoW15)
AGAGTGCCCGGGCTGGAGGGTCAGTTGAGGGAGGAGGCGGAGGCCAGGGA
GTTAGAGAAGCTGAGGGCGGACGAGCTTCAAGCGCAGCAGGACAAGGAGG
CGGCGCAGAATGAGTTGAGAGTGCCCGGGCTGGAGGGTCAGTTGAGGGAG
GAGGCGGAGGCCAGGGAGTTAGAGAAGCTGAGGGCGGACGAGCTTCAAGC
GCAGCAGGACAAGGAGGCGGCGCAGAATGAGTTGGTAAAAGAGCGGCTGT
TTGACCTCGAGCGGTCGGTCGAGATGTCCGACTGGAGCGAGCGGAAGCTG
GCCAAAGAGAACGAGGGGCTTCAGGGGTTAATCAGCCGCAACCGGAAGAG
GTAAAAGAGCGGCTGTTTGACCTCGAGCGGTCGGTCGAGATGTCCGACTG
GAGCGAGCGGAAGCTGGCCAAAGAGAACGAGGGGCTTCAGGGGTTAATCA
GCCGCAACCGGAAGAGATTTCAGAAAGAGCTCGCTAGACTGGGCGACGCG
TCTGCCGAGCTGCAGGAGAAGTCGGCGACCCTCAACGAGGTGGAGGCATC
GCTGAGCCAGGAGAAAAAGACCGTCCGGGAGCTCACTAATCAGGTTAATA
TGTTACAGTTGATGTGTTACTCCTTTTAAATTTCAGAAAGAGCTCGCTAG
ACTGGGCGACGCGTCTGCCGAGCTGCAGGAGAAGTCGGCGACCCTCAACG
AGGTGGAGGCATCGCTGAGCCAGGAGAAAAAGACCGTCCGGGAGCTCACT
AATCAGGTTAATATGTTACAGTTGATGTGTTACTCCTTTTAA
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