mRNA_L-elsbetiae_contig122.1835.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig122.1835.1
Unique NamemRNA_L-elsbetiae_contig122.1835.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig122.1835.1 vs. uniprot
Match: D7G0E3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0E3_ECTSI)

HSP 1 Score: 181 bits (458), Expect = 1.390e-47
Identity = 146/342 (42.69%), Postives = 190/342 (55.56%), Query Frame = 1 
Query:   22 RSLAAQQCAQVRTELALALGRLSTRSSLVSNTQSAARRASTSNRTLLLRLVGSELRRWRERAATTSASQSREDAETT-------------PDEDGVGADQQYE----NTDHTSTSQS--------TDGGIETEGDDLG-------------AESDSSERRAGGSGEKQRLDLSPRKKMGLGAKR-RSKRSEAGTGAILNLSKVGVDDETLGRVVRKVLRACIHGSH-----GQLSQSDG----DRQKHEESAKANAVVPLARLLLRGNNITDAGALLLVPLVKGSPHMSELDLRDNAIGASGKEALKKALTSNPRVHRVVSEDLCGNLG--GTRGLGGLVLR 897
            R LAAQQCA+VRTELALALGRLS R+ LVS+T++AARR S  NRTLLLRLV SE+R WR RAA  +  QS  + E               P E        Y+    N   +  ++S        TD  IE  GD                 + +  ER  GG GE+ R  + P+   G G +R + K+  AG G  LNLS   +DDETL +VVRK+LR C   S      G + +  G    D +  + +  ++A++PL  LLLRGNN+TDAGAL LVPLV+ S  ++ +DLR N IG  G+ ALKKALT +P V+RV SE+  G+    G+   GG+VLR
Sbjct:  433 RHLAAQQCAEVRTELALALGRLSCRAMLVSDTRAAARRTSICNRTLLLRLVRSEMRLWRLRAAAAATEQSAREKEVLRTALTERGRPFFPPGEGDANPSTTYDKHPTNVCRSPDAESAAFTVNWGTDSEIEAAGDGXXXXXXXXXXXXXXYGDGEEIERSIGGRGER-RSRMQPKGNEGTGVERAKRKKRPAGAGFHLNLSGFDLDDETLHQVVRKLLRQCTDRSRAWPGAGAMYEQQGGAGEDGRNGQNTLSSSAIMPLRCLLLRGNNLTDAGALALVPLVEASSSLAAIDLRGNRIGTKGELALKKALTRSPWVYRVTSEEASGSDAREGSISTGGVVLR 773
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BLAST of mRNA_L-elsbetiae_contig122.1835.1 vs. uniprot
Match: A0A6H5KFK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFK5_9PHAE)

HSP 1 Score: 152 bits (383), Expect = 1.300e-37
Identity = 135/371 (36.39%), Postives = 186/371 (50.13%), Query Frame = 1 
Query:   22 RSLAAQQCAQVRTELALALGRLSTRSSLVSNTQSAARRASTSNRTLLLRLVGSELRRWRERAATTSASQSREDAE-----------------------TTPDEDGVGADQQYENTDHTSTSQSTDGGIETEGDDLGAESDSSE---------------RRAGGSGEKQRLDLSPRKKMGLGAKR-RSKRSEAGTGAILNLSKVGVDDETLGRVVRKVLRACIHGS---------HGQLSQSDGDRQKHEESAKANAVVPLARLLLRGNNITDAGALLLVPLVKGSPHMSELDLRDNAIGASGKEALKK-----------------------------ALTSNPRVHRVVSEDLCGNLG--GTRGLGGLVLR 897
            R LAAQQCA+VRTELAL LGRLS R+ LVS+T++AARR S  NRT+LLRLV SE++ WR RAA     QS  + E                       +T D+      ++Y++ +  + + +     ETE                           R  GG GE+ R  + P+ K G G +R + K+  AG G  LNLS V +DD+TL +VVRK+LR C   S         H Q   +  D +  + +  ++ ++PL  LLLRGNN+TDAGA+ LVPLV+ S  ++ +DLR N I   G+ ALKK                             ALT +P V+RV SE++ G+    G+   GG+VLR
Sbjct:   80 RRLAAQQCAEVRTELALTLGRLSCRAMLVSDTRAAARRTSICNRTVLLRLVRSEMQLWRLRAAAAELQQSSNEKEAMRTAQAEQGGLFFSPGEGDANPSTSDDKHPANVRRYQDAERAAVTMNWGTDSETEXXXXXXXXXXXXXXXXXXXXXXXXXXXRSKGGRGER-RSRIQPKGKEGTGFERAQRKKHPAGAGFTLNLSGVDLDDQTLHQVVRKLLRQCTDRSRAWSGAGAMHEQQGGAGKDGRNGQNTLSSSTIMPLRCLLLRGNNLTDAGAIALVPLVEASCSLAAIDLRGNRIETKGELALKKVMACGVTGGRATKRSLEHRIMFEESLNQGALTRSPWVYRVTSEEVSGSDAREGSTSTGGVVLR 449
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BLAST of mRNA_L-elsbetiae_contig122.1835.1 vs. uniprot
Match: A0A7S1TRJ7_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TRJ7_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 7.050e-5
Identity = 38/113 (33.63%), Postives = 56/113 (49.56%), Query Frame = 1 
Query:  496 LNLSKVGVDDETLGRVVRKVLRACIHGSHGQLSQSDGDRQKHEESAKANAVVPLARLLLRGNNITDAGALLLVPLVKGSPHMSELDLRDNAIGASGKEALKKALTSNPRVHRV 834
            + L +  +DD +   +V  +L      +H  L   D   + H++         L  ++LRGN +T AGAL L  LV  S  +  LDLRD  IG  G +AL++AL  N  V +V
Sbjct:  758 IRLPQCLIDDHSAHGIVHLIL-GPEEDAHRLLLDGDDAVETHKDD--------LGMIVLRGNELTSAGALALARLVSASHTLRSLDLRDCRIGERGIKALEEALALNGSVRKV 861
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig122.1835.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G0E3_ECTSI1.390e-4742.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KFK5_9PHAE1.300e-3736.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1TRJ7_9STRA7.050e-533.63Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig122contigL-elsbetiae_contig122:53755..56046 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size899
Cds size897
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig122.1835.1prot_L-elsbetiae_contig122.1835.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig122 53755..56046 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815419.801898-CDS-L-elsbetiae_contig122:53754..538501622815419.801898-CDS-L-elsbetiae_contig122:53754..53850Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig122 53755..53850 -
1691682888.9040012-CDS-L-elsbetiae_contig122:53754..538501691682888.9040012-CDS-L-elsbetiae_contig122:53754..53850Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig122 53755..53850 -
1622815419.8124828-CDS-L-elsbetiae_contig122:54246..545071622815419.8124828-CDS-L-elsbetiae_contig122:54246..54507Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig122 54247..54507 -
1691682888.9126298-CDS-L-elsbetiae_contig122:54246..545071691682888.9126298-CDS-L-elsbetiae_contig122:54246..54507Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig122 54247..54507 -
1622815419.8219776-CDS-L-elsbetiae_contig122:55214..555171622815419.8219776-CDS-L-elsbetiae_contig122:55214..55517Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig122 55215..55517 -
1691682888.923429-CDS-L-elsbetiae_contig122:55214..555171691682888.923429-CDS-L-elsbetiae_contig122:55214..55517Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig122 55215..55517 -
1622815419.8325174-CDS-L-elsbetiae_contig122:55809..560461622815419.8325174-CDS-L-elsbetiae_contig122:55809..56046Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig122 55810..56046 -
1691682888.9316874-CDS-L-elsbetiae_contig122:55809..560461691682888.9316874-CDS-L-elsbetiae_contig122:55809..56046Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig122 55810..56046 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig122.1835.1

>prot_L-elsbetiae_contig122.1835.1 ID=prot_L-elsbetiae_contig122.1835.1|Name=mRNA_L-elsbetiae_contig122.1835.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=299bp
CLASTPVRSLAAQQCAQVRTELALALGRLSTRSSLVSNTQSAARRASTSN
RTLLLRLVGSELRRWRERAATTSASQSREDAETTPDEDGVGADQQYENTD
HTSTSQSTDGGIETEGDDLGAESDSSERRAGGSGEKQRLDLSPRKKMGLG
AKRRSKRSEAGTGAILNLSKVGVDDETLGRVVRKVLRACIHGSHGQLSQS
DGDRQKHEESAKANAVVPLARLLLRGNNITDAGALLLVPLVKGSPHMSEL
DLRDNAIGASGKEALKKALTSNPRVHRVVSEDLCGNLGGTRGLGGLVLR
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mRNA from alignment at L-elsbetiae_contig122:53755..56046-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig122.1835.1 ID=mRNA_L-elsbetiae_contig122.1835.1|Name=mRNA_L-elsbetiae_contig122.1835.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2292bp|location=Sequence derived from alignment at L-elsbetiae_contig122:53755..56046- (Laminarionema elsbetiae ELsaHSoW15)
TGCCTTGCATCAACCCCTGTTAGAAGCTTAGCGGCGCAACAATGCGCACA
GGTCAGGACAGAGCTAGCGTTGGCTCTCGGCCGCCTCTCCACTCGGTCCT
CACTCGTCTCCAATACTCAATCAGCCGCCCGGCGAGCCTCCACCAGCAAT
CGCACCTTGCTGCTGCGGCTGGTGGGTTCGGAGCTCCGGCGGTGGCGGGA
GCGCGCCGCAACGACCTCAGCATCACAAAGTCGGGAGGTGGGTGCCTCGG
CTTGACATGACCGCGACAGCAAAGATTTTCCACCTGTCACGCGTGCATCA
CGGGCGGAAACAGCCTAGATAGACAGTCACCGCACAGAGCTGCCAGACTT
GCATGCGGGCCACCCGCAGCCGCACTATGTGCGGCGTTTACTTAAATTTA
CCAGGCCTTTGACGTGATTTTATTGGCGATGAAACTGGGCTGCACGCCTC
GTGACGGTGTGATGAATTAGATACCACCGCACGACGATTGGTTCCCCCAA
CGTATCGCGTTCACGCCGAAAACATCCAGGATGCAGAAACTACCCCGGAT
GAGGATGGCGTGGGTGCCGATCAGCAATACGAAAACACGGACCATACCAG
CACCTCTCAATCTACAGACGGCGGCATCGAGACCGAAGGAGACGATTTGG
GTGCCGAGAGCGACTCGAGCGAACGACGAGCAGGTGGCAGTGGGGAGAAG
CAAAGACTCGATCTGTCGCCCCGAAAGAAAATGGGGTTGGGGGCAAAACG
ACGGTCAAAACGCTCTGAAGCCGGTACGGGAGCCATCCTGAATCTTTCCA
AGGTCGGCGTCGACGACGAAACGCTAGGCCGGGTAAGATACCGGTTGGCA
CCGGAGCCGTTTCTGGCCCTACGGGCGTAAGACTTTATCAGAGACAGTTC
AAAGTAAAAAATGCATGCTTCCGGCTCTTTTACTCTCCTCAGCAGAAAGG
GGGGCCAGGATCAAACTATATAAACATAGCAATAGACAACTCTCGGTGAG
ATTGCCTGCTGGCCGCGTTCCGCAGATTGATAGACGAAGAGCTGGCTTTA
CAACAGTGACGGAAGATACCATTATCACATAAACTCCCACTCAAAGTGTG
CAGGAATGTTTCATGGCCATATTTATTGGCAGAAACTCAAAGATATTGGT
AGGAACGAGACTCCGTCTCCAAACGGTTCCGTGGACGCGCTGTCCATGCG
TAGAGGTCGCTTGGCTCAAAACGCACTGAAGAGGCGTTTCTGACCCTATT
TAGAAACTTTACTGACGAGGAAAACATCCAATGCCATGCTCACAAGATAC
AGTCTACGCCTCTCTTCAAATACATATTGTATCTCGAGGAAACAAGCGCG
TTTCGGTGTGGTGGGGATCCTGACTGCTTTTCATCCCAGTTCCGTCTCAA
CGACATCCTCGCTTTCTCGCTTGTGAACGTTCAAAAAGTCAACGTTTTCA
TATTTCGTAAAGCTGTACCGACAAAACCCTCGTCAGCACATACCTCATTA
CACACCTCGCTTCGCTGTGACGTTTTCGGCGTTCTAAAGGTGGTTAGAAA
GGTTCTGCGAGCGTGTATCCATGGATCGCACGGACAGCTGAGTCAGTCAG
ACGGAGATCGCCAAAAGCATGAAGAATCGGCGAAAGCGAACGCTGTTGTA
CCGCTGGCTCGCTTGCTGCTGCGGGGCAACAACATTACGGACGCGGGAGC
GTTGCTTCTTGTTCCCCTGGTTAAGGGATCTCCCCATATGTCGGAGCTTG
ATCTCCGGGACAACGCGATCGGTGCAAGCGGGAAGGAAGCACTAAAAAAG
GTAATGATAATTGCCTCCCTTTAACGCAAGGCCTGTGAAGGGGTCGGGTT
TAGCCCGAGAAGGCGCGAGTGAGGCCTAAAACCGAGTCTAAACCATGGGG
ATACTTCTGGAAGCTGCTGTCCACTCGTTGCCAAACGATGCAGATACGAA
AGTAGGGCCGTGTAGTGGGTGATCTCTGAACCAGCGAGTATTGCCTGGAG
AACAGTCCGAAAGCATGCAGCACGCCAGGTGTAACATAAACCCATGTAAC
ATTGACTAAATAGCTGCCCAATCGAGTTTTCGGAAGGTGGCCATTCCTCT
GACCCCACACGGGGTACATGCAGGTGCCAGATGCACAATCAAGTTTTGAC
CAACCGGTACCACACGCCCGCCCTCTTGCTCTCAACCCGGGCTCAGGCCT
TGACAAGCAATCCGCGGGTCCACCGTGTTGTCAGCGAGGATTTGTGCGGC
AATCTCGGCGGGACGAGGGGGCTGGGGGGGCTCGTCCTGCGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig122:53755..56046-

>mRNA_L-elsbetiae_contig122.1835.1 ID=mRNA_L-elsbetiae_contig122.1835.1|Name=mRNA_L-elsbetiae_contig122.1835.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1794bp|location=Sequence derived from alignment at L-elsbetiae_contig122:53755..56046- (Laminarionema elsbetiae ELsaHSoW15)
TGCCTTGCATCAACCCCTGTTAGAAGCTTAGCGGCGCAACAATGCGCACA
GGTCAGGACAGAGCTAGCGTTGGCTCTCGGCCGCCTCTCCACTCGGTCCT
CACTCGTCTCCAATACTCAATCAGCCGCCCGGCGAGCCTCCACCAGCAAT
CGCACCTTGCTGCTGCGGCTGGTGGGTTCGGAGCTCCGGCGGTGGCGGGA
GCGCGCCGCAACGACCTCAGCATCACAAAGTCGGGAGTGCCTTGCATCAA
CCCCTGTTAGAAGCTTAGCGGCGCAACAATGCGCACAGGTCAGGACAGAG
CTAGCGTTGGCTCTCGGCCGCCTCTCCACTCGGTCCTCACTCGTCTCCAA
TACTCAATCAGCCGCCCGGCGAGCCTCCACCAGCAATCGCACCTTGCTGC
TGCGGCTGGTGGGTTCGGAGCTCCGGCGGTGGCGGGAGCGCGCCGCAACG
ACCTCAGCATCACAAAGTCGGGAGGATGCAGAAACTACCCCGGATGAGGA
TGGCGTGGGTGCCGATCAGCAATACGAAAACACGGACCATACCAGCACCT
CTCAATCTACAGACGGCGGCATCGAGACCGAAGGAGACGATTTGGGTGCC
GAGAGCGACTCGAGCGAACGACGAGCAGGTGGCAGTGGGGAGAAGCAAAG
ACTCGATCTGTCGCCCCGAAAGAAAATGGGGTTGGGGGCAAAACGACGGT
CAAAACGCTCTGAAGCCGGTACGGGAGCCATCCTGAATCTTTCCAAGGTC
GGCGTCGACGACGAAACGCTAGGCCGGGATGCAGAAACTACCCCGGATGA
GGATGGCGTGGGTGCCGATCAGCAATACGAAAACACGGACCATACCAGCA
CCTCTCAATCTACAGACGGCGGCATCGAGACCGAAGGAGACGATTTGGGT
GCCGAGAGCGACTCGAGCGAACGACGAGCAGGTGGCAGTGGGGAGAAGCA
AAGACTCGATCTGTCGCCCCGAAAGAAAATGGGGTTGGGGGCAAAACGAC
GGTCAAAACGCTCTGAAGCCGGTACGGGAGCCATCCTGAATCTTTCCAAG
GTCGGCGTCGACGACGAAACGCTAGGCCGGGTGGTTAGAAAGGTTCTGCG
AGCGTGTATCCATGGATCGCACGGACAGCTGAGTCAGTCAGACGGAGATC
GCCAAAAGCATGAAGAATCGGCGAAAGCGAACGCTGTTGTACCGCTGGCT
CGCTTGCTGCTGCGGGGCAACAACATTACGGACGCGGGAGCGTTGCTTCT
TGTTCCCCTGGTTAAGGGATCTCCCCATATGTCGGAGCTTGATCTCCGGG
ACAACGCGATCGGTGCAAGCGGGAAGGAAGCACTAAAAAAGGTGGTTAGA
AAGGTTCTGCGAGCGTGTATCCATGGATCGCACGGACAGCTGAGTCAGTC
AGACGGAGATCGCCAAAAGCATGAAGAATCGGCGAAAGCGAACGCTGTTG
TACCGCTGGCTCGCTTGCTGCTGCGGGGCAACAACATTACGGACGCGGGA
GCGTTGCTTCTTGTTCCCCTGGTTAAGGGATCTCCCCATATGTCGGAGCT
TGATCTCCGGGACAACGCGATCGGTGCAAGCGGGAAGGAAGCACTAAAAA
AGGCCTTGACAAGCAATCCGCGGGTCCACCGTGTTGTCAGCGAGGATTTG
TGCGGCAATCTCGGCGGGACGAGGGGGCTGGGGGGGCTCGTCCTGCGCGC
CTTGACAAGCAATCCGCGGGTCCACCGTGTTGTCAGCGAGGATTTGTGCG
GCAATCTCGGCGGGACGAGGGGGCTGGGGGGGCTCGTCCTGCGC
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