|
Homology
BLAST of mRNA_L-elsbetiae_contig12189.1819.1 vs. uniprot
Match: D7G4A8_ECTSI (C2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4A8_ECTSI) HSP 1 Score: 487 bits (1253), Expect = 1.850e-164 Identity = 349/526 (66.35%), Postives = 377/526 (71.67%), Query Frame = 1
Query: 1 TTLGGILGGVAADRLSTTALDNLAG---------GGDFGCYDLLTKGVGPACLLLVVLSRGIRGEPSVAVKPAAAVALASLLLEPLFSAYVLGTG------------------TAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESAVARARWLTGGAQLALWAAVVLAYANLSLRLCRSGDGSGRTVAGYMAALRTLAAKKRGTGGWVRIDRWAKGGXXXXXXXXXXXXXXXXXXDNSRPRAHSLLGSLYETLVSGGGWRGGGRIGPGAMALSQYQTMDDSGPPFERGEVTVRSIYCFGLDAAITGRPPSASLNXXXXXXXXXXXXXXXXXXXXXXX--------GGASRPFYVTITLGSVTAKTSPRPGFSPSFTEVFPLGCDCPIRGAFLTITVVDSFESGRSGRGDRVVGEVHLPLDAAQLVPGTSS--------HGGDPXXXXXXXXXSAYRLSGDWELQGALGGSLGGARVGADVVIHGPPSPSSAAGRLRRRR-ESVGWYAR 1446
TTLGG+LGGVAADRLSTT ++LAG G +F CYD+LTKGVGPACLLLVVLSR IR EPSVAVKPAAAVALA+LLLEPLFSAYVLG T + XXXXXXXXXXXXXXXXXXXXXXXXX VARARWLT GAQL LWAAVVLAYAN+SLRL R G +TV GYM+ALR+LAAKKRGTGGWVRID+W G XXXXXXXXXXXXX RA+ LLGSLYETL+ GRI P AMAL Q+Q D GPPFERGEVTVRSIYC GLDA+ITGRPPS + XXXXXXXXXXXXXXX GG+SRPFYVT++LG +TAKTS R GFSP+FTEVFPLGCDCPIRGA+LTI VVDSFE+GRSGRGDRVVGEVHLPL+AAQLVPGTS AYRL GDWELQGALGG L GARVGAD+++HGPPSPSSAAGRLRRRR ESVGWYAR
Sbjct: 54 TTLGGVLGGVAADRLSTTISESLAGNDVGXXXXXGCEFTCYDVLTKGVGPACLLLVVLSRSIRSEPSVAVKPAAAVALAALLLEPLFSAYVLGXXXXXXXXXXXXXXXXXXXXTRSGLARLLLLRDVPHRVLGQVGXXXXXXXXXXXXXXXXXXXXXXXXXXXLVARARWLTAGAQLVLWAAVVLAYANVSLRLSRGPPG--KTVGGYMSALRSLAAKKRGTGGWVRIDQWGTG------XXXXXXXXXXXXXXXXXARANGLLGSLYETLMGXXXXXXXGRICPEAMALCQHQKSYD-GPPFERGEVTVRSIYCSGLDASITGRPPSNGNSVGGVGVGGXXXXXXXXXXXXXXXXXXGGLIAGGSSRPFYVTVSLGGLTAKTSARQGFSPTFTEVFPLGCDCPIRGAYLTIAVVDSFETGRSGRGDRVVGEVHLPLEAAQLVPGTSGLDDNADMFSSSSSSGGWDGGSGPAYRLRGDWELQGALGGPLCGARVGADIMVHGPPSPSSAAGRLRRRRRESVGWYAR 570
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | signal peptide |
Ec32 ortholog description | C2 domain |
Ec32 ortholog | Ec-02_001980.1 |
Exons | 5 |
Model size | 1552 |
Cds size | 1101 |
Stop | 1 |
Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622815418.3698547-UTR-L-elsbetiae_contig12189:97..200 | 1622815418.3698547-UTR-L-elsbetiae_contig12189:97..200 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig12189 98..200 - |
1691682888.1217225-UTR-L-elsbetiae_contig12189:97..200 | 1691682888.1217225-UTR-L-elsbetiae_contig12189:97..200 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig12189 98..200 - |
1622815418.4293802-UTR-L-elsbetiae_contig12189:2941..3227 | 1622815418.4293802-UTR-L-elsbetiae_contig12189:2941..3227 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig12189 2942..3227 - |
1691682888.1627326-UTR-L-elsbetiae_contig12189:2941..3227 | 1691682888.1627326-UTR-L-elsbetiae_contig12189:2941..3227 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig12189 2942..3227 - |
1622815418.4402661-UTR-L-elsbetiae_contig12189:4033..4095 | 1622815418.4402661-UTR-L-elsbetiae_contig12189:4033..4095 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig12189 4034..4095 - |
1691682888.1756485-UTR-L-elsbetiae_contig12189:4033..4095 | 1691682888.1756485-UTR-L-elsbetiae_contig12189:4033..4095 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig12189 4034..4095 - |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622815418.383226-CDS-L-elsbetiae_contig12189:200..504 | 1622815418.383226-CDS-L-elsbetiae_contig12189:200..504 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig12189 201..504 - |
1691682888.1301174-CDS-L-elsbetiae_contig12189:200..504 | 1691682888.1301174-CDS-L-elsbetiae_contig12189:200..504 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig12189 201..504 - |
1622815418.393154-CDS-L-elsbetiae_contig12189:1485..1844 | 1622815418.393154-CDS-L-elsbetiae_contig12189:1485..1844 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig12189 1486..1844 - |
1691682888.1383002-CDS-L-elsbetiae_contig12189:1485..1844 | 1691682888.1383002-CDS-L-elsbetiae_contig12189:1485..1844 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig12189 1486..1844 - |
1622815418.4092083-CDS-L-elsbetiae_contig12189:2464..2621 | 1622815418.4092083-CDS-L-elsbetiae_contig12189:2464..2621 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig12189 2465..2621 - |
1691682888.1472988-CDS-L-elsbetiae_contig12189:2464..2621 | 1691682888.1472988-CDS-L-elsbetiae_contig12189:2464..2621 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig12189 2465..2621 - |
1622815418.4188316-CDS-L-elsbetiae_contig12189:2660..2941 | 1622815418.4188316-CDS-L-elsbetiae_contig12189:2660..2941 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig12189 2661..2941 - |
1691682888.1549559-CDS-L-elsbetiae_contig12189:2660..2941 | 1691682888.1549559-CDS-L-elsbetiae_contig12189:2660..2941 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig12189 2661..2941 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig12189.1819.1 >prot_L-elsbetiae_contig12189.1819.1 ID=prot_L-elsbetiae_contig12189.1819.1|Name=mRNA_L-elsbetiae_contig12189.1819.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=367bp
MVSGGGRRRSAAAAAAAAESAVARARWLTGGAQLALWAAVVLAYANLSLR LCRSGDGSGRTVAGYMAALRTLAAKKRGTGGWVRIDRWAKGGGGPVPGGG GGGAGGGGGGDNSRPRAHSLLGSLYETLVSGGGWRGGGRIGPGAMALSQY QTMDDSGPPFERGEVTVRSIYCFGLDAAITGRPPSASLNNGGGGADHGGG GGGGGGGGGIIAGGASRPFYVTITLGSVTAKTSPRPGFSPSFTEVFPLGC DCPIRGAFLTITVVDSFESGRSGRGDRVVGEVHLPLDAAQLVPGTSSHGG DPSSGGGGGGGSAYRLSGDWELQGALGGSLGGARVGADVVIHGPPSPSSA AGRLRRRRESVGWYAR* back to topmRNA from alignment at L-elsbetiae_contig12189:98..4095- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig12189.1819.1 ID=mRNA_L-elsbetiae_contig12189.1819.1|Name=mRNA_L-elsbetiae_contig12189.1819.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3998bp|location=Sequence derived from alignment at L-elsbetiae_contig12189:98..4095- (Laminarionema elsbetiae ELsaHSoW15) ACTACCCTTGGAGGTATCCTGGGCGGCGTCGCCGCTGACCGGCTCTCCAC
TACGGCCTTGGAGTGAGTCGTGAAAATTGCGAGTGGTCACCAGCCAGCCA
GTCAGTCTGTAGATCGGTTTGTCGAAATTGCTCTTCGAGTGAGAGTTACC
CTGCGCACACAAAGCAGGCTGGACTTCTTGTGTGCAGGACACATACATTG
AATTTCACGCGTTACCGAGCATGGCCGCGTGATCCCCAACCTCGGTGCTT
ACGCGGCGGTGGCCGGCACACACGAAACCACCCCGACCGAAGCCGCAGAA
CCGCACAGATTAAAGAAAAAGGAACTCGCCGCCGCCTTATGTATACGCAT
ACCGCACAGCACGACCAGAAAAGTTTCCATGGTTATATTATTCGACCTCG
CCGTCGACGAGGGAAAGGGACGGCTGAACCCTTCTCACGACAAAAATCCT
AGGCAAGCACCGCAGACGGGGGGAGTGGGGGGGGGGCTTGGGGAAAGGAA
CCCTTCTGTGTGACCACGGTTTAGTACTCTGGCAAGATATCCTCGTGACA
GGGAGCCCATCGAGCACTGGAAATAAATGTGAAGAAGAAAATAAATAAAT
ATACATGGTTGTGGATTATAAACTAACATGTGTATCTGAAGCAGCGTGTG
TTGCCAACCGCTCAAGCCACAACCCCCACCCCCGGCCCGTCACGTCGCCA
AGTGTTTTGTCTCCTCCGCACGACAACAGTAGTAGTAGATACCTCTTCAG
CTTCACAAAAAAGATAAAAAAAAAATCGCGCTTGTTGCTCGACCCCAACC
AAAAACCACGCACCCGTCCGTTCGTTCCCCGCCGCCTATTATGTCCTCTT
CTTTTGCTTCTTCTTCAGCAACCTGGCCGGCGGCGGCGACTTCGGCTGCT
ACGACTTGCTGACAAAGGGCGTGGGGCCGGCCTGCCTCCTGCTCGTCGTG
CTCAGCCGGGGCATCCGCGGCGAGCCGTCCGTCGCCGTCAAGCCCGCCGC
CGCCGTCGCCCTCGCCTCGCTCCTCCTCGAGCCCCTGTTCAGCGCCTACG
TCCTCGGGACCGGTACGGCCGCCGCCGCCGCCGCCGCCGCCGCCGCTGCC
TCCTCGACCGGCAACAGGGCGGCTGCTGGCCTGCTCCTCCAGCGCGCCTT
CAGCATGGTCAGCGGCGGCGGCCGCAGAAGAAGCGCCGCCGCCGCGGCGG
CGGCGGCGGAGTCGGCGGTCGCCCGGGCGCGCTGGCTGACGGGAGGCGCG
CAGCTGGCCCTCTGGGCGGCGGTCGTCCTGGCGTACGCGAACCTCTCCCT
GCGACTCTGCCGGTCCGGGGACGGCTCCGGCAGGACGGTGGCCGGCTACA
TGGCGGCCCTGCGCACCCTCGCCGCCAAGAAGCGCGGCACCGGCGGCTGG
GTGAGAATAGACCGGTGGGCGAAGGGCGGGGGCGGGTGGCGCGGGGAGGG
AGAAGGGGGGACCGCGCCGAACAGCCCGGTCCCGGGGGGGGGGGGGGGGG
GGGCAGGGGGCGGCGGCGGCGGCGACAACTCCCGGCCGCGGGCGCACAGC
TTGCTCGGATCGCTGTACGAGACGCTGGTGTCGGGAGGGGGATGGAGAGG
CGGCGGCCGCATTGGCCCCGGTGCAATGGCGGTAAGATGGTGGCCTGGGT
GTGTTCAGTTTTGTTTTTTTTGGGGGGGGGCGTTTGACGTTCCGGCTCTC
CCTTCGTGGATAAACATCGTGAACAGCTGCTACCCTTGAATGCACGCAGG
TATTTGCTCAAAATATTTGCTCTATTTCGTGCCTTGGTCCGTGAAACAAC
TTGAGCAAGGCGCTGAAGAAGTGATTTGCGGGGGGGGGTTGTCCCAGAGG
ATCTGTAGGGATAAGCCCCCTTGTACGGAGTGGAAACCGCTTCGAAATCA
TATGGAACCGAAGTTGGGAACGCTCTACTATTTGGTATTTACTATTCCTT
GGACAGAGGTATCAAAATATTTTACCAAAGGATGCTGCTTAACAATATAG
ATTATGGTCGCACGAAAAGAGAGGACAAGATACCAGTGGATATGTTCCAA
ACCGAGGGTGTCGTCCACTCAAAAAATCGGCTTCTACCTGAACCACCTAC
CCGCTCTCTACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCACACACCCGACCAAACGGGGCCCCACCGCGCGCCCAGCGGCGGG
GCCGGCGCCCGCCCCCCCCNNNNNNNNNNCCCCCTCCCTCCGAAACAACA
GCTTAGCCAGTACCAAACGATGGACGACAGCGGGCCCCCTTTCGAGAGAG
GCGAGGTCACCGTCCGCAGCATCTACTGCTTCGGCCTCGACGCCGCCATC
ACCGGCCGCCCGCCGTCCGCGTCCCTCAACAACGGCGGCGGCGGCGCCGA
CCACGGCGGCGGTGGCGGCGGTGGCGGCGGCGGCGGCGGGATTATCGCGG
GCGGTGCGTCCCGGCCCTTCTACGTGACCATCACCCTAGGCAGCGTCACC
GCCAAGACGTCGCCGAGGCCGGGGTTCTCGCCTAGCTTCACGGAGGTGTT
TCCGCTCGGCTGCGATTGCCCGATCAGGGGAGCGTTTCTCACCATCACCG
TCGTCGACAGGTGCGTGCAGGGGGGGGCAGTGATTGTCCATACGTGGTTT
TGGCAGAGGTTGTTGTTGTTGTTGTTGATTCTCACATTAGCTCTCTAGTC
CAAAAACATTCTTGGGGGGGTCCGTGGTCACAAAACAAGGCACGCTCGAC
GCCGCGGAAGAATAATAAAACAAACACAAGTGTGGTACATACCCGCCCGA
CGGTATACTAAACTGAGCCCCGGAGGGATCTTGCGTGTGTCGCTGGCACA
AACCAGAGGTATGGTACATACAGACTACTCGGAAGATTAAAATAAAAGAA
AGGTCAAAAAACCAAATACCCCGCAAATACCCCGCCAGGCAGAAAGAAAG
GGGACTACAACTACGGGGGGACGAAGGCTTCCCAGAGGTGTGAGGAAGTA
AGTAGGACATGTGGCACATGGAGAGGGAAAGAGGGTTGGATAACTTGGTT
GTGAAACCGGCGAGGCCTATTGTGCTTGAAGGTTACCGGGGCGGGTGCTA
CGTACTTGTTGTTGTGGTTGTAGAGGTATGGGGGAAGGGTGTTTGGTTTT
GTTAGCTATTTCTGGGTAGAAAAACGACAAACAGGGCAAGTACTCAATAG
ACTTGAGTGAAGTGCCGGACAAATAAATTCCACGTGTGAATGAAGGAGGG
CACATGCCTCTCTTCTACAGCCAGCCTCAGACATAACGAGAAACACATCA
AAACTAGCGAGGGGGGAACCTTTTTCGCTCCAGCCTACCGGAGACGTTTC
TAGCCATCCGGGGGAGCTCCCGCACCACGCACCTCATATGAACAGCAGTG
TTATTTTTCTAAACTATGCATGTAGTACACGTCTCCACTTGGGGGGACTG
TCGCCAAAATAAATGGGAAGGACACACACACACACACACACACACACACA
CACACACACGCATGTACATGCCCTTTCCCCTCCCCTTTGTCCAACCCAAC
TCCTCTTACCAACGTCGCTAAACCTTTGATCCACAAACCAGCTTCGAGTC
GGGCCGTAGCGGGCGCGGCGACCGCGTCGTGGGCGAGGTACACCTCCCCC
TCGACGCGGCGCAGCTCGTCCCCGGAACGTCCTCTCACGGCGGAGACCCC
TCGAGCGGCGGCGGCGGCGGCGGCGGGAGCGCGTACCGGCTGAGCGGGGA
CTGGGAGCTGCAGGGCGCGCTCGGCGGCTCGCTGGGCGGGGCGAGGGTCG
GCGCGGACGTTGTGATTCACGGGCCCCCTTCGCCCAGCTCCGCCGCGGGA
AGGCTGAGGAGAAGGAGGGAGTCGGTCGGATGGTACGCTCGGTGAAAAAA
AGCACGGAAAAAAAAACGAAAAGAAGACAACAGCAGTGGCTTGACTCATC
CGACTCGACCGAGCGAGAGGGGCAAGCAAGGCTCAGACCCGCTGCCGG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig12189:98..4095- >mRNA_L-elsbetiae_contig12189.1819.1 ID=mRNA_L-elsbetiae_contig12189.1819.1|Name=mRNA_L-elsbetiae_contig12189.1819.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2202bp|location=Sequence derived from alignment at L-elsbetiae_contig12189:98..4095- (Laminarionema elsbetiae ELsaHSoW15) ATGGTCAGCGGCGGCGGCCGCAGAAGAAGCGCCGCCGCCGCGGCGGCGGC GGCGGAGTCGGCGGTCGCCCGGGCGCGCTGGCTGACGGGAGGCGCGCAGC TGGCCCTCTGGGCGGCGGTCGTCCTGGCGTACGCGAACCTCTCCCTGCGA CTCTGCCGGTCCGGGGACGGCTCCGGCAGGACGGTGGCCGGCTACATGGC GGCCCTGCGCACCCTCGCCGCCAAGAAGCGCGGCACCGGCGGCTGGGTGA GAATAGACCGGTGGGCGAAGGGCGGGGGCGGATGGTCAGCGGCGGCGGCC GCAGAAGAAGCGCCGCCGCCGCGGCGGCGGCGGCGGAGTCGGCGGTCGCC CGGGCGCGCTGGCTGACGGGAGGCGCGCAGCTGGCCCTCTGGGCGGCGGT CGTCCTGGCGTACGCGAACCTCTCCCTGCGACTCTGCCGGTCCGGGGACG GCTCCGGCAGGACGGTGGCCGGCTACATGGCGGCCCTGCGCACCCTCGCC GCCAAGAAGCGCGGCACCGGCGGCTGGGTGAGAATAGACCGGTGGGCGAA GGGCGGGGGCGGCCCGGTCCCGGGGGGGGGGGGGGGGGGGGCAGGGGGCG GCGGCGGCGGCGACAACTCCCGGCCGCGGGCGCACAGCTTGCTCGGATCG CTGTACGAGACGCTGGTGTCGGGAGGGGGATGGAGAGGCGGCGGCCGCAT TGGCCCCGGTGCAATGGCGCCCGGTCCCGGGGGGGGGGGGGGGGGGGGCA GGGGGCGGCGGCGGCGGCGACAACTCCCGGCCGCGGGCGCACAGCTTGCT CGGATCGCTGTACGAGACGCTGGTGTCGGGAGGGGGATGGAGAGGCGGCG GCCGCATTGGCCCCGGTGCAATGGCGCTTAGCCAGTACCAAACGATGGAC GACAGCGGGCCCCCTTTCGAGAGAGGCGAGGTCACCGTCCGCAGCATCTA CTGCTTCGGCCTCGACGCCGCCATCACCGGCCGCCCGCCGTCCGCGTCCC TCAACAACGGCGGCGGCGGCGCCGACCACGGCGGCGGTGGCGGCGGTGGC GGCGGCGGCGGCGGGATTATCGCGGGCGGTGCGTCCCGGCCCTTCTACGT GACCATCACCCTAGGCAGCGTCACCGCCAAGACGTCGCCGAGGCCGGGGT TCTCGCCTAGCTTCACGGAGGTGTTTCCGCTCGGCTGCGATTGCCCGATC AGGGGAGCGTTTCTCACCATCACCGTCGTCGACAGCTTAGCCAGTACCAA ACGATGGACGACAGCGGGCCCCCTTTCGAGAGAGGCGAGGTCACCGTCCG CAGCATCTACTGCTTCGGCCTCGACGCCGCCATCACCGGCCGCCCGCCGT CCGCGTCCCTCAACAACGGCGGCGGCGGCGCCGACCACGGCGGCGGTGGC GGCGGTGGCGGCGGCGGCGGCGGGATTATCGCGGGCGGTGCGTCCCGGCC CTTCTACGTGACCATCACCCTAGGCAGCGTCACCGCCAAGACGTCGCCGA GGCCGGGGTTCTCGCCTAGCTTCACGGAGGTGTTTCCGCTCGGCTGCGAT TGCCCGATCAGGGGAGCGTTTCTCACCATCACCGTCGTCGACAGCTTCGA GTCGGGCCGTAGCGGGCGCGGCGACCGCGTCGTGGGCGAGGTACACCTCC CCCTCGACGCGGCGCAGCTCGTCCCCGGAACGTCCTCTCACGGCGGAGAC CCCTCGAGCGGCGGCGGCGGCGGCGGCGGGAGCGCGTACCGGCTGAGCGG GGACTGGGAGCTGCAGGGCGCGCTCGGCGGCTCGCTGGGCGGGGCGAGGG TCGGCGCGGACGTTGTGATTCACGGGCCCCCTTCGCCCAGCTCCGCCGCG GGAAGGCTGAGGAGAAGGAGGGAGTCGGTCGGATGGTACGCTCGGTGACT TCGAGTCGGGCCGTAGCGGGCGCGGCGACCGCGTCGTGGGCGAGGTACAC CTCCCCCTCGACGCGGCGCAGCTCGTCCCCGGAACGTCCTCTCACGGCGG AGACCCCTCGAGCGGCGGCGGCGGCGGCGGCGGGAGCGCGTACCGGCTGA GCGGGGACTGGGAGCTGCAGGGCGCGCTCGGCGGCTCGCTGGGCGGGGCG AGGGTCGGCGCGGACGTTGTGATTCACGGGCCCCCTTCGCCCAGCTCCGC CGCGGGAAGGCTGAGGAGAAGGAGGGAGTCGGTCGGATGGTACGCTCGGT GA back to top
|