mRNA_L-elsbetiae_contig12186.1818.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12186.1818.1
Unique NamemRNA_L-elsbetiae_contig12186.1818.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig12186.1818.1 vs. uniprot
Match: D7G0P2_ECTSI (Origin recognition complex subunit 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0P2_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 6.500e-17
Identity = 39/45 (86.67%), Postives = 42/45 (93.33%), Query Frame = 1 
Query:    1 LAMMVESMKTGKVDGVPVIFVLDVFERFTCRKPQTLLYALLDLCQ 135
            LAMMV+SMKTG V+GVPV+FVLD FERF CRKPQTLLYALLDLCQ
Sbjct:  162 LAMMVDSMKTGAVNGVPVVFVLDEFERFACRKPQTLLYALLDLCQ 206
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BLAST of mRNA_L-elsbetiae_contig12186.1818.1 vs. uniprot
Match: A0A6H5JJU9_9PHAE (Origin recognition complex subunit 4 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJU9_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 6.610e-17
Identity = 39/45 (86.67%), Postives = 42/45 (93.33%), Query Frame = 1 
Query:    1 LAMMVESMKTGKVDGVPVIFVLDVFERFTCRKPQTLLYALLDLCQ 135
            LAMMV+SMKTG V+GVPVIF+LD FERF CRKPQTLLYALLDLCQ
Sbjct:  200 LAMMVDSMKTGAVNGVPVIFILDEFERFACRKPQTLLYALLDLCQ 244
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12186.1818.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G0P2_ECTSI6.500e-1786.67Origin recognition complex subunit 4 n=1 Tax=Ectoc... [more]
A0A6H5JJU9_9PHAE6.610e-1786.67Origin recognition complex subunit 4 n=1 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12186contigL-elsbetiae_contig12186:4716..4856 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.4
Seed ortholog evalue1.9e-12
Seed eggNOG ortholog2880.D7G0P2
Preferred nameORC4
KEGG koko:K02606
KEGG Pathwayko04110,ko04111,ko04113,map04110,map04111,map04113
KEGG ModuleM00284
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000082,GO:0000166,GO:0000228,GO:0000278,GO:0000785,GO:0000790,GO:0000808,GO:0003674,GO:0003676,GO:0003677,GO:0003688,GO:0003690,GO:0003824,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005656,GO:0005657,GO:0005664,GO:0005694,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006265,GO:0006267,GO:0006270,GO:0006325,GO:0006342,GO:0006355,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009743,GO:0009744,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010033,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016458,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019219,GO:0019222,GO:0022402,GO:0022607,GO:0030466,GO:0030554,GO:0031261,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0032993,GO:0033260,GO:0034285,GO:0034622,GO:0034641,GO:0034645,GO:0035639,GO:0036094,GO:0036387,GO:0036388,GO:0040029,GO:0042221,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043388,GO:0043565,GO:0043596,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044770,GO:0044772,GO:0044786,GO:0044843,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051098,GO:0051099,GO:0051101,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0060255,GO:0065003,GO:0065004,GO:0065007,GO:0065009,GO:0070013,GO:0071103,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901363,GO:1901576,GO:1901700,GO:1902292,GO:1902299,GO:1902315,GO:1902595,GO:1902597,GO:1902679,GO:1902969,GO:1902975,GO:1903047,GO:1903506,GO:1903507,GO:1990837,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.DNA replication origin binding
EggNOG OGsKOG2228@1,KOG2228@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03032
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-14_001730.1
Exons1
Model size141
Cds size135
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815418.3202372-UTR-L-elsbetiae_contig12186:4715..47211622815418.3202372-UTR-L-elsbetiae_contig12186:4715..4721Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12186 4716..4721 +
1691682888.1021402-UTR-L-elsbetiae_contig12186:4715..47211691682888.1021402-UTR-L-elsbetiae_contig12186:4715..4721Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12186 4716..4721 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815418.3342557-CDS-L-elsbetiae_contig12186:4721..48561622815418.3342557-CDS-L-elsbetiae_contig12186:4721..4856Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12186 4722..4856 +
1691682888.1120176-CDS-L-elsbetiae_contig12186:4721..48561691682888.1120176-CDS-L-elsbetiae_contig12186:4721..4856Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12186 4722..4856 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12186.1818.1prot_L-elsbetiae_contig12186.1818.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12186 4722..4856 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12186.1818.1

>prot_L-elsbetiae_contig12186.1818.1 ID=prot_L-elsbetiae_contig12186.1818.1|Name=mRNA_L-elsbetiae_contig12186.1818.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=45bp
MMVESMKTGKVDGVPVIFVLDVFERFTCRKPQTLLYALLDLCQVR
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mRNA from alignment at L-elsbetiae_contig12186:4716..4856+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12186.1818.1 ID=mRNA_L-elsbetiae_contig12186.1818.1|Name=mRNA_L-elsbetiae_contig12186.1818.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=141bp|location=Sequence derived from alignment at L-elsbetiae_contig12186:4716..4856+ (Laminarionema elsbetiae ELsaHSoW15)
CTCGCGATGATGGTGGAGTCGATGAAGACGGGGAAGGTGGACGGCGTGCC
GGTGATCTTCGTGCTGGACGTGTTCGAGCGTTTCACCTGCCGCAAGCCGC
AGACGCTGCTCTACGCCTTGCTCGACCTGTGCCAGGTTCGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12186:4716..4856+

>mRNA_L-elsbetiae_contig12186.1818.1 ID=mRNA_L-elsbetiae_contig12186.1818.1|Name=mRNA_L-elsbetiae_contig12186.1818.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=270bp|location=Sequence derived from alignment at L-elsbetiae_contig12186:4716..4856+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATGGTGGAGTCGATGAAGACGGGGAAGGTGGACGGCGTGCCGGTGAT
CTTCGTGCTGGACGTGTTCGAGCGTTTCACCTGCCGCAAGCCGCAGACGC
TGCTCTACGCCTTGCTCGACCTGTGCCAGGTTCGCATGATGGTGGAGTCG
ATGAAGACGGGGAAGGTGGACGGCGTGCCGGTGATCTTCGTGCTGGACGT
GTTCGAGCGTTTCACCTGCCGCAAGCCGCAGACGCTGCTCTACGCCTTGC
TCGACCTGTGCCAGGTTCGC
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