mRNA_L-elsbetiae_contig1217.1803.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1217.1803.1
Unique NamemRNA_L-elsbetiae_contig1217.1803.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1217.1803.1 vs. uniprot
Match: A0A6H5LDY4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDY4_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 2.120e-21
Identity = 43/52 (82.69%), Postives = 47/52 (90.38%), Query Frame = 1 
Query:   88 VLSIHFFGRAITLDLWFASETEAVEWQGMLMKLSWKEQGYMYRGPPGDAGGG 243
            V+SIHFFGR ITLDLWFASETEAVEWQG+L KLSWKEQGY+Y  P GD+GGG
Sbjct:  851 VMSIHFFGRTITLDLWFASETEAVEWQGLLTKLSWKEQGYLYGAPSGDSGGG 902
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BLAST of mRNA_L-elsbetiae_contig1217.1803.1 vs. uniprot
Match: D7FIV6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIV6_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 7.240e-21
Identity = 43/51 (84.31%), Postives = 46/51 (90.20%), Query Frame = 1 
Query:   88 VLSIHFFGRAITLDLWFASETEAVEWQGMLMKLSWKEQGYMYRGPPGDAGG 240
            V+SIHFFGR ITLDLWFASETEAVEWQGML KLSWKEQGY+Y  P GD+GG
Sbjct:  623 VMSIHFFGRTITLDLWFASETEAVEWQGMLTKLSWKEQGYLYGPPSGDSGG 673
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1217.1803.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LDY4_9PHAE2.120e-2182.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FIV6_ECTSI7.240e-2184.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1217contigL-elsbetiae_contig1217:17119..20668 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size316
Cds size315
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815417.1377962-CDS-L-elsbetiae_contig1217:17119..172661622815417.1377962-CDS-L-elsbetiae_contig1217:17119..17266Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1217 17120..17266 -
1691682887.4707937-CDS-L-elsbetiae_contig1217:17119..172661691682887.4707937-CDS-L-elsbetiae_contig1217:17119..17266Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1217 17120..17266 -
1622815417.147896-CDS-L-elsbetiae_contig1217:20500..206681622815417.147896-CDS-L-elsbetiae_contig1217:20500..20668Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1217 20501..20668 -
1691682887.479102-CDS-L-elsbetiae_contig1217:20500..206681691682887.479102-CDS-L-elsbetiae_contig1217:20500..20668Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1217 20501..20668 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1217.1803.1prot_L-elsbetiae_contig1217.1803.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1217 17120..20668 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1217.1803.1

>prot_L-elsbetiae_contig1217.1803.1 ID=prot_L-elsbetiae_contig1217.1803.1|Name=mRNA_L-elsbetiae_contig1217.1803.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=105bp
TGRRADRAATDVGRGEVGGPGSPGPPRHRVLSIHFFGRAITLDLWFASET
EAVEWQGMLMKLSWKEQGYMYRGPPGDAGGGEENTKSPDAGEENHDGETA
KLVAS
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mRNA from alignment at L-elsbetiae_contig1217:17119..20668-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1217.1803.1 ID=mRNA_L-elsbetiae_contig1217.1803.1|Name=mRNA_L-elsbetiae_contig1217.1803.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3550bp|location=Sequence derived from alignment at L-elsbetiae_contig1217:17119..20668- (Laminarionema elsbetiae ELsaHSoW15)
ACGGGTCGGCGAGCGGACAGAGCCGCGACCGATGTTGGGAGGGGGGAGGT
GGGGGGTCCGGGCTCTCCAGGGCCGCCGCGGCATCGCGTGCTGTCGATCC
ACTTCTTCGGGAGAGCGATCACGCTGGATCTGTGGTTTGCCAGCGAGACG
GAGGCGGTGGAGTGGCAGGTGAGGCTGTTTTTGTTGCTTCGTTGCGATCC
TGTGCGTGCGGCTGGTTTTTTCGGCAACGGGCAAAACAAGGTATACCTTG
TACTTTTCCGGCGAAAACAGGGCATGTGTGGTACCGAATTTCAACGTGCA
GGACCTGCCAAGCCCGACCTCATGCATTCTCTCTGAGGCTGTCGCGTGAC
AATCAAAGTTGAGTCTAACCCGGGCTAGCGTTGATAGAGGCATGATACGT
ATATCGGTCCGTGCACAATGATTTGTCGAACTGCGTTTTGGGCGAAAACT
TTTGTTGGAAATTGTTTTGGAACCTGAAACAGCGATATTCATGACCGCCT
CGTAGAGACACGTCGATAGCTTGAAACATGGTTTCCTTTTTTGAGCAGAA
GCAATATTTTCCATCAAATGTATGCTCACGGAGCCCCCTTCCATACTACG
GAGCCCCGCGGACAATCTGCTTCACCTTCAAACTAAACTTAGAAAGAGAC
TGCGAAACAAAATGTGGAATATCTCGAGAACTAGAATATTTCCCGGACAA
AAGAAAAATGCAATCTGGAGATAGATGAGAGGAATCATTTGCCGCACTCT
ATTGGTTAGATACATATGGCATACTATAACTAAACAAGTTGACCCTCTAG
GTCCTATTTTTCCACGACATTTTTATCAATTTTGATACTTTCAAAAACAA
AAATACCCCTCTGGCAAATTCCGAGATCGGTTGAAATCCGTTGAAATATT
TGAAATCCACAAATACCGCACCTCATGAAAAACAAAACACGTTTTCCCGG
GTTTTCTCTGATAAAAAGTTGAGGAAAAAAATAAAAAAAACGTCATAAGA
TGCACCTGGAGACAGGGCATTTGCCGGTACTTTCGGATTGCACAACAACC
ACCTACCTGTCTGTGTGCAGAGAGAAGTTGCCATCCCCACCTGGAAACAT
TGCACACCCTGTACAAATACTTCATTTGGTATTTGCCTGGCAAACAACTA
CTTCTTGAAAACCTTGCGCAACTATTTGTTTACAGACAAATACTGTTGAG
AAAAGCTGCGCAATAATTTGTCTGTGGACAAATACTGTTGAGAAAAGCTG
CGCAACTATTTGTCTGCAGGCAACTACTGTTCTGAAAAGCTGCGCAACTA
TTTGTCTGCAGGCAACTACTGTTCTGAAAAGCTGCGCAACTACTTTTGTC
TGCAGACAAATACTGTTGAGAAAAGCTGCGCAACTATTTGTCTGCAGACA
AATACTGTTGAAAAAAGCTGCGCAACTATTTGCCTGCAGACAAATACTGT
TTGGAAAAGCTGCGCAACTATTTGCCTGCAGACAAATACTGTTGAGAAAA
GCTGCGCAACTATTTGCCTGCAGACAAATACTGTTTGGAAAAGCTGCGCA
ACTATTTGTCTGCAGGCAAATACTGTTTGGAAAAGCTGCGCAACTAGTTG
TCTGCGGACAAATACCTGCCCTAAACAACTAAACGCAACTATTAGTTGTA
TTTGTTATTTGTATTTGTACAGGGTGTGAACATTGGGACAAATTGTTGTG
CGCGGACCATACGTCTACGTACATGCTCGGGGGCGGGGTAGACGCTCCGC
CATCCAACTGCGCACGACTGCAGTATATGACCTCGTTTGTACAGTAGTAG
CGTGACGGCGGGGCTACTCAGTTGGCTTGCTGTGGTAGGGTGAAAAATAC
ATTTATTTGGCTTAGGGAGCATCCGCACGAGGAAACGTGAGCAGGAGGGG
TACTCTTTTCCTAGGCTATGAGGTCGCACTAAAGCCCTGTTCCCGGATCA
AGAGCCCCTGTTTCCGGCCAAAAGAGGGTAAACAAGTGCGGCAAAACAAG
GTGTAGCCAGGAATTGAGGGGCCACACGAAGGTGTACGTTGTAATTTTTC
GGCCAAGAGAGGGTGCTCGGTAACAATTTCCACTTGAACACAGAATAGAA
CACCCTGTTTTGGCCGGAAAAATACAAGGTACAAGGTTCCCCTTCGGGAG
GTCAGCGCGTGCCTCCCGGGGCTGACGCAAATCGAAATACTCACAAACAA
CGTAGGACACGAAGTAGCACTTCACACAAAAAGTATTGCACGAAAAAAGC
GTTTAAAAAAAAAAAAGGCTGTGCCGGGATTCGAACCCGCGTCCGGATAT
TCGATGGTTTGGACGGAAGAAATTCCCCGCAACACCCCGCGAGATTCTGT
TGTTGTTGCATACCATCTTCCGTGTGTGGCCTGCAACATCTGCGGTTACT
CTTCAAATATGTGCACACCGTCTTGCTGTGTGTGGACGGACGTGCAGCCA
GCAGTTTGAACGTATGCAAATGCGTGAAGAGCAGAAAAGAGACTGCGAAG
AAAAAGAGCAAACGCCTGTTTCATTTTTTCCGGAATTGGTACCCCGCAAA
ATAAAGCCAGTTTCGGCGGCTTCCGGTGGCCATAACTCGAGCCACCGGCT
TGAGATGAACCCCACACACGGCTGATAATGCACCGACGGGTCCTCTGAGC
ATCTTGCAGAAAAAAGTTTGACTCAAAACGATGTCCCGGCAGAGAAAATT
AGACAGAATCAGCAAAAAAGTTGAAATACTTTGACATACACCTTGTGTTT
GGCCGTTGTCTTATTGTTACTTATTGTTACTGGAGGGTATCGGGTCTGTT
TCGTTTGTTCCCCCCGTTACTCTCGGAGATCCTCCCACGCAGATATGCAT
GTGTCATGTGTATTATGGGTGCGAAACGAGTTTGGTTCTGTAATGGGTCG
TACGGCGTAATTATTCGCTTTTTCGCAAAATTGTTTGCTCTATTTTTCCA
TCTTCTCCGCACGTCCGGTCACAGACCACTTCGATGTGCAATATTCGTGT
GATATTCTACATAGAGTAATCACGTAACGGAAGAGACGATAGTTCCGGGC
TGGCCCCAGTACGTCGTGCGCGTCCTGGCCAGCGATATCAGCTTAGTTTT
ATGCTCTCAGCCCGATTTACCTAGGACTGGCACGTTTCGTGCTCGCCGTT
TTATCCAACTGGGTATTGTACGCCCAATCTGTTGGACCCGACTATGGTTA
CCCTGATGCATCAAGGAGCAAAGGACAATCCTTATGAAATAAATCATGAG
CCATATGCGAAGTGTAAAAAGTGTACAGCAGTGACCCTGGTTTTGCGACA
CACCTTGATCGACGTGAGAAAATCACCACGCCCGACACTTACTTAGACTG
TGCTCTCGTCCCGCCATCTCCATGACGTCCGTACCGGAAAACAACTTAAT
AGGGAATGCTGATGAAGCTGTCGTGGAAGGAGCAGGGCTACATGTATCGA
GGGCCGCCAGGTGACGCCGGCGGTGGAGAGGAGAACACCAAGTCGCCGGA
TGCAGGGGAAGAGAACCACGACGGAGAAACCGCGAAACTAGTTGCGTCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1217:17119..20668-

>mRNA_L-elsbetiae_contig1217.1803.1 ID=mRNA_L-elsbetiae_contig1217.1803.1|Name=mRNA_L-elsbetiae_contig1217.1803.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=630bp|location=Sequence derived from alignment at L-elsbetiae_contig1217:17119..20668- (Laminarionema elsbetiae ELsaHSoW15)
ACGGGTCGGCGAGCGGACAGAGCCGCGACCGATGTTGGGAGGGGGGAGGT
GGGGGGTCCGGGCTCTCCAGGGCCGCCGCGGCATCGCGTGCTGTCGATCC
ACTTCTTCGGGAGAGCGATCACGCTGGATCTGTGGTTTGCCAGCGAGACG
GAGGCGGTGGAGTGGCAGACGGGTCGGCGAGCGGACAGAGCCGCGACCGA
TGTTGGGAGGGGGGAGGTGGGGGGTCCGGGCTCTCCAGGGCCGCCGCGGC
ATCGCGTGCTGTCGATCCACTTCTTCGGGAGAGCGATCACGCTGGATCTG
TGGTTTGCCAGCGAGACGGAGGCGGTGGAGTGGCAGGGAATGCTGATGAA
GCTGTCGTGGAAGGAGCAGGGCTACATGTATCGAGGGCCGCCAGGTGACG
CCGGCGGTGGAGAGGAGAACACCAAGTCGCCGGATGCAGGGGAAGAGAAC
CACGACGGAGAAACCGCGAAACTAGTTGCGTCGGGAATGCTGATGAAGCT
GTCGTGGAAGGAGCAGGGCTACATGTATCGAGGGCCGCCAGGTGACGCCG
GCGGTGGAGAGGAGAACACCAAGTCGCCGGATGCAGGGGAAGAGAACCAC
GACGGAGAAACCGCGAAACTAGTTGCGTCG
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