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Homology
BLAST of mRNA_L-elsbetiae_contig12157.1796.1 vs. uniprot
Match: A0A6H5K075_9PHAE (DUF4470 domain-containing protein (Fragment) n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K075_9PHAE) HSP 1 Score: 357 bits (917), Expect = 2.970e-112 Identity = 185/281 (65.84%), Postives = 209/281 (74.38%), Query Frame = 1
Query: 1 FADTFVFYVKKPP---RKCRAYHADTV-SSNNTSRILLTGEGPGIAAPKAMEWGAELTGVHRQYQFWGYLDPFPTLFDLVPSGRKYYTKTNPAMVHHNCNPLSAFHQDNVWLSFK-EEEKAMNEDDHANGGGGSTTHPLYCGPPRVSGVDLTVDRRPADFEDEPEEAKQHIMSKLVANAMEQLSRMCWAANWALTEKEQAQPSAVLAKQGRPRGPVDVRLNFVVGDAVDTCDALCLLSSEGLNAWGKARDGDESGRVCSFMPNMSLAPSHLELRDVDGPAR 828
+ADT + +K ++ + YH TV S N S ILLTGEGPGIAAPKAMEWG E+TG+HRQYQ WGYLDPFP L R+Y VHH CNPLSAFH D+VWL FK E ++ ++ N G S PLY GPPRV+GVDLTV P +FEDEPEEAKQHIMSKLVA ++EQLSRMCWA NWA EKEQ+ SA LAKQGRPR PVDVR+NFV+GDAVDTCDA+CLLSSEGL AWGKARDG E GRVCSFMPNMSL+P LEL D+DGPAR
Sbjct: 233 YADTSIVQIKPKKQLDKERKTYHDRTVFPSKNASPILLTGEGPGIAAPKAMEWGTEMTGIHRQYQSWGYLDPFPV---LRGGARRY-----EGGVHHKCNPLSAFHHDDVWLPFKPREHESTHDGGRFNMTGSSGCMPLYAGPPRVTGVDLTVTESPLEFEDEPEEAKQHIMSKLVATSLEQLSRMCWAVNWARLEKEQSS-SAALAKQGRPRPPVDVRMNFVLGDAVDTCDAMCLLSSEGLAAWGKARDGHEPGRVCSFMPNMSLSPCQLELADLDGPAR 504
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 6 |
| Model size | 831 |
| Cds size | 831 |
| Stop | 1 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815416.3683724-CDS-L-elsbetiae_contig12157:1143..1230 | 1622815416.3683724-CDS-L-elsbetiae_contig12157:1143..1230 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig12157 1144..1230 - |
| 1691682887.0493975-CDS-L-elsbetiae_contig12157:1143..1230 | 1691682887.0493975-CDS-L-elsbetiae_contig12157:1143..1230 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig12157 1144..1230 - |
| 1622815416.3791437-CDS-L-elsbetiae_contig12157:2262..2512 | 1622815416.3791437-CDS-L-elsbetiae_contig12157:2262..2512 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig12157 2263..2512 - |
| 1691682887.0610342-CDS-L-elsbetiae_contig12157:2262..2512 | 1691682887.0610342-CDS-L-elsbetiae_contig12157:2262..2512 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig12157 2263..2512 - |
| 1622815416.3881052-CDS-L-elsbetiae_contig12157:3538..3762 | 1622815416.3881052-CDS-L-elsbetiae_contig12157:3538..3762 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig12157 3539..3762 - |
| 1691682887.0709565-CDS-L-elsbetiae_contig12157:3538..3762 | 1691682887.0709565-CDS-L-elsbetiae_contig12157:3538..3762 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig12157 3539..3762 - |
| 1622815416.397027-CDS-L-elsbetiae_contig12157:4714..4754 | 1622815416.397027-CDS-L-elsbetiae_contig12157:4714..4754 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig12157 4715..4754 - |
| 1691682887.0808892-CDS-L-elsbetiae_contig12157:4714..4754 | 1691682887.0808892-CDS-L-elsbetiae_contig12157:4714..4754 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig12157 4715..4754 - |
| 1622815416.4112194-CDS-L-elsbetiae_contig12157:5118..5138 | 1622815416.4112194-CDS-L-elsbetiae_contig12157:5118..5138 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig12157 5119..5138 - |
| 1691682887.0983202-CDS-L-elsbetiae_contig12157:5118..5138 | 1691682887.0983202-CDS-L-elsbetiae_contig12157:5118..5138 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig12157 5119..5138 - |
| 1622815416.4203887-CDS-L-elsbetiae_contig12157:5410..5620 | 1622815416.4203887-CDS-L-elsbetiae_contig12157:5410..5620 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig12157 5411..5620 - |
| 1691682887.109868-CDS-L-elsbetiae_contig12157:5410..5620 | 1691682887.109868-CDS-L-elsbetiae_contig12157:5410..5620 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig12157 5411..5620 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig12157.1796.1 >prot_L-elsbetiae_contig12157.1796.1 ID=prot_L-elsbetiae_contig12157.1796.1|Name=mRNA_L-elsbetiae_contig12157.1796.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=277bp
FADTFVFYVKKPPRKCRAYHADTVSSNNTSRILLTGEGPGIAAPKAMEWG
AELTGVHRQYQFWGYLDPFPTLFDLVPSGRKYYTKTNPAMVHHNCNPLSA
FHQDNVWLSFKEEEKAMNEDDHANGGGGSTTHPLYCGPPRVSGVDLTVDR
RPADFEDEPEEAKQHIMSKLVANAMEQLSRMCWAANWALTEKEQAQPSAV
LAKQGRPRGPVDVRLNFVVGDAVDTCDALCLLSSEGLNAWGKARDGDESG
RVCSFMPNMSLAPSHLELRDVDGPAR* back to topmRNA from alignment at L-elsbetiae_contig12157:1144..5620- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig12157.1796.1 ID=mRNA_L-elsbetiae_contig12157.1796.1|Name=mRNA_L-elsbetiae_contig12157.1796.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4477bp|location=Sequence derived from alignment at L-elsbetiae_contig12157:1144..5620- (Laminarionema elsbetiae ELsaHSoW15)
TTCGCCGACACATTTGTTTTTTACGTGAAAAAACCCCCCCGCAAATGCAG
GGCCTACCATGCTGACACGGTCTCCTCCAACAACACCTCCCGCATCCTCC
TCACGGGAGAGGGGCCCGGCATCGCCGCCCCGAAGGCCATGGAGTGGGGT
GCGGAGCTGACGGGCGTCCACCGGCAGTACCAGTTCTGGGGCTACCTGGA
CCCCTTCCCTGTGCTGCGCGACGGAGCTCGGAGGCGAGAACTATAGCTTA
ATATGTTTACTTCGTTGTTATATGAGTAAATACCTGACGCACTAGTTATG
TAGTGACAAGAAGACAGTTTTTGTACACGAGAGTATGAAGACAAGTGCCC
TCTTTGGGCGTCCTGTAGGAGTATGTAGTAATGGTGGTGGTGGAGTGGAA
GTATAGATAGTGGTGGTACTATTTATAAGGGAGTAGAACTTTTTCCACCT
TCGAAACCCCTTTCCGCTTTGCTGTGCTCGAGACATTGTTCGATCTGGTT
CCGTCAACGGGCCAAGTGCTGTTTTCACCCTCCGGAGCGGTTGCCGGTTG
GCGCGCGCAGCGGTACCGGGCGGGCGGGGGCCCATTGCTGTTGACGTGCC
GCATACCTTGCCTGCCCTCCTCGCACGGCTTGTCCTCCTCGCACGACCTG
CCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGGCTTGCCTGC
CTGCCTGCCTCTCGCCCCGTGTTTTGTGAGCGATACATACTCCTTTGTTT
AGCGTCACGCATTCCTCACGCCCCAAATGCGGTTGTTGTGCCAATGCCTG
CCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGATTGCC
TGATTGCCTCGACGAGCAGCGGCCGCAAGTACTACACCAAGACCAATCCC
GCCATGGTCGGGACTGATCACCATGAGCTGGAATACCAGGCAAGAGAAAC
TGGAAGGGAGAGGCGGGGAGGGGAGGGGAGGGGAGGGGAGGGGAGGGGTA
CGCGAGATGAGGGTGGGAGGGATTAGACGTACGCAAAGAGCATCAGAGGA
ATATCGTCTTGATGTCTTGGAGCTTTTGGCGGGCGGGCGGGCGGGTGAGT
GAATGCCTTACAGCTGGAGTAAGGGGCCCAGCTGGGCAGACCGGACCGGT
TCTTGCGCTGCTTTCTATTGCTGTAATATCTATCTTTGTGTCCCTCCCCC
AAAAAACAATTTCCCCAACCTGGCATGTAAAACAATCGAGGTTGTACATA
CACGCATAAATACATGCTTCGTATGAAGCTTTTTCTGTCGTAAATTAGGT
TTTTGTGCTCCGTGTGTTTTTTTGTTTGCTTACTCTTTATCTGACCTGCT
GACAGGTCGCGCGATCTTTTTTTTTGTATGTTGTAAGTATGCATGTGATC
TAGGCCTGTGCTGTTTCGAAGAAGAAAGAAATAGATCAATACATACACAA
GAGAAAGAGAGGTGTAAGCCCGACGTGCTGACTGCAGAACAAGTTTGACA
CCGCTGCCGTACTCTGGCGGCAACTCTCTTGTGCAGAAAGGCGCCCGCCC
CACCCCTATAAACGCCAAGCTTTGTGTAGTACAGAGTGTTATTTCCACGC
GCGCGCGGGGGCGGGAGGAGTTACCAAGAAGTTTAACCAGGTAAAAGTAC
TACATACATACGTACATGAAGTATTAGCTTACGCCCCGTCCTGTCCTTCC
TGCCGACACGCCCACCAACCCCGCATTAACATGCCATGCTTGTTCACCCC
CCGCCGCCGCCGCCGCCGCCGCCGCCCCCTCCGCTCCCGCCGCCCCCGCC
GCCCCCTGGAACGAAACGACACGTCGACACGAAACTGCTCGTGCTAAACG
ACATCCAGGTTCATCACAACTGCAACCCGCTAAGCGCGTTTCACCAGGAC
AACGTTTGGCTCTCTTTCAAGGAGGAAGAAAAAGCCATGAACGAGGACGA
CCATGCAAACGGCGGAGGTGGCAGCACGACCCATCCCTTGTACTGCGGAC
CCCCCAGGGTTTCGGGGGTGGACCTGACCGTTGACAGGCGCCCCGCTGAT
TTTGAAGACGAGCCTGAAGAAGCCAAACAGCAGTGAGTGGTTTGGTCGGT
CTCGTCGTTGGCAAAGTATGCAGCGCTTTCGTTGTGTATCGTTGCTGCTG
ACGATGCTGCTGTTGTTGCTGCTGTTGATGCTGCTGCTGCTGCTGATGAT
GCTCATGCTCATGCTCATGCTCATGCTCATGCTGTTGATGCTGATGCCTG
CTGCGGATGTGGATGCTGATGTTGGTGCTGATGCTGATGCTGATGCTGAT
GCTGATGCTAATGCTGCTGCTGATGCCTGCTGCGGATGCGGATGCTGATG
CCTGCTGCTGATGCCTGCTGCGGATGCGGATGCTGATGCCTGCTGCTGAT
GTTGACGCTGCTGCTGATGCTAATGCTGCTGCTGCTGCTGCTGGTGCCTG
CTGCGGATGCGGATGCGGATGCTGATGCTGATGCCTGCTGCTGATGCCTG
ATGCCTGATGCTGATGCCTGCTGCGGATGCTGCTGCTGATGTTGATGCTG
CTGCTGATGCTGCTGCTGATGCTAATGCTGCTGCTGATGCTGATGTTTTT
TTCTTGTTTCAGTCAACAGGGCGCGAAACGCTTATTCTGCAGCTTTCTGG
TATCTGCACGTTTTTAGCACGACCAGCCGGGATATCAGCCAGCCAGCCAA
GTCTCATCACTCAGCAGTTGGTTTTTGTGATGCCCTCATAATATATCCCC
CCCCCCTACTGAGAGGCAGGCCCTCACCTATCTCCCGATGTTCCCTTCGT
CCCTTCCTGATCCTGACAAAAAGCAAGCCCGAAGATAAAGCATGCTCTTC
GTTCCCCCCGAGCATACATACATACGTACTTTCTATATAAAGCTAAATTT
GTAACTAACTGTCGAAGCACAATCGACCAAAAAGACGAAAACACCCCCCA
AGTGTGTGCGGCACGTGCGCGCGCACTCACCGAGACTTTATACACACAAA
CCTACCTACGAACCTACTGCTGTCGTTTAGTTCTATTCATACATACCAGT
ACATAAATACATAATACAATACGACCAAAACACACGCTAATTTTGTTTTT
TTGAACAGTATTATGTCCAAGCTCGTGGCGAACGCGATGGAGCAGCTGTC
GCGCATGTGTTGGGCGGCCAACTGGGCGCTGACGGAGAAGGAGCAGGCGC
AGCCGTCCGCGGTGCTGGCCAAGCAGGGGAGGCCCAGGGGCCCCGTGGAT
GTGCGGCTCAACTTCGTGGTGGGCGACGCGGTCGACACCTGCGACGCCCT
GTGCCTCCTGTCCTCCGAGGGCTTGAACGCCTGGGGCAAGGCTCGCGACG
GCGATGAGGTGTGTGTGTGTGTGTGTGTGTTTTTTTGTTCTCTCCCATCA
CTAGCTAGACGTGTGTGTGGGGGGTTAAGTTGTTAAATTGCGTGGATATT
TTTTCCTTTTTTTTTCTTCTTCCCACTATTGGCTTATTCGTCGTCTGCCC
CACTGGCCCCCCTTCCTCCACTGCGACTGGCTAAACGGCCCAACCGGGGT
CACACATAATGGGGGGGGGGGTGGACCCCCGCCTGCGGCGCCTGCCCCTG
GTGTGATGTTTTTATCGCGAGCAGGGTTCAGCACTCCCCACTCTGTACAC
TGGTGTCTTCGCCACGGGGCCCCCGAAAGGAGGAAAACAAGTCCATTCGT
ACCATGCATGTGTCGTGGGAAAAGCCTTTTGTGGAAAAGGAAAAGTTGTA
TTGTGGATGTACCAGGTAGTTTTTTTTTAAATCAGGGAGACGTTTTTTGA
CTACTATTTACTCGCGTGCAGCAAAAGCTAAGGGCGGCTCGCGGCGAGGT
GGGGTGGGGTGGTGGGTCTGCGGGGTGGGAAGGGGGGTGAGTAATAGGAC
ATGCGGGGGGTCCCGTGTCTTGTCGGTTAAATAGTGTAAAAGCGTAGGTG
GCATACGTAGTTAGCGATTTGTTTCACCGTCTGCTGTGTGTGTTCGAACG
AACGAACGAACGTGGACGTTTAATACTTATTCTAGGAAGAAGTCTACAGG
GCGTTTTTTTGCGGGTTGTTAATATTTTACAGCCGTGAGCGCCATCGGCC
TCTTCCTTCTCCTTCCCCTTCCCCTTCTCCCCTCCCCCACGCGTGTTGCG
GCATCCGATGTACATACACAGCAGTGCACACAATCTGTTTTTTCTCTACT
GCCCCAATGGTTTCGATCGCTTTGAACAAAAATGGAAAGAATAAAAAAAA
AACCACCCCCCCCCCCCCCCGCCTTCGTTTTGTCGGTCCCCTTTTTTTCG
TGGCCTTCTTTTATTAACCTTGGCGGGGATAAACATATTATACACATTTC
TTTTTCTTTCTACTTGTTCGTCGCCGAACGACCGCAACAGTCGGGCAGGG
TGTGCAGCTTCATGCCCAACATGTCTCTCGCCCCGTCCCATCTAGAGCTC
CGGGACGTCGACGGCCCCGCAAGGTGA back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig12157:1144..5620- >mRNA_L-elsbetiae_contig12157.1796.1 ID=mRNA_L-elsbetiae_contig12157.1796.1|Name=mRNA_L-elsbetiae_contig12157.1796.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1662bp|location=Sequence derived from alignment at L-elsbetiae_contig12157:1144..5620- (Laminarionema elsbetiae ELsaHSoW15)
TTCGCCGACACATTTGTTTTTTACGTGAAAAAACCCCCCCGCAAATGCAG
GGCCTACCATGCTGACACGGTCTCCTCCAACAACACCTCCCGCATCCTCC
TCACGGGAGAGGGGCCCGGCATCGCCGCCCCGAAGGCCATGGAGTGGGGT
GCGGAGCTGACGGGCGTCCACCGGCAGTACCAGTTCTGGGGCTACCTGGA
CCCCTTCCCTTTCGCCGACACATTTGTTTTTTACGTGAAAAAACCCCCCC
GCAAATGCAGGGCCTACCATGCTGACACGGTCTCCTCCAACAACACCTCC
CGCATCCTCCTCACGGGAGAGGGGCCCGGCATCGCCGCCCCGAAGGCCAT
GGAGTGGGGTGCGGAGCTGACGGGCGTCCACCGGCAGTACCAGTTCTGGG
GCTACCTGGACCCCTTCCCTACATTGTTCGATCTGGTTCCACATTGTTCG
ATCTGGTTCCCAGCGGCCGCAAGTACTACACCAAGACCAATCCCGCCATG
CAGCGGCCGCAAGTACTACACCAAGACCAATCCCGCCATGGTTCATCACA
ACTGCAACCCGCTAAGCGCGTTTCACCAGGACAACGTTTGGCTCTCTTTC
AAGGAGGAAGAAAAAGCCATGAACGAGGACGACCATGCAAACGGCGGAGG
TGGCAGCACGACCCATCCCTTGTACTGCGGACCCCCCAGGGTTTCGGGGG
TGGACCTGACCGTTGACAGGCGCCCCGCTGATTTTGAAGACGAGCCTGAA
GAAGCCAAACAGCAGTTCATCACAACTGCAACCCGCTAAGCGCGTTTCAC
CAGGACAACGTTTGGCTCTCTTTCAAGGAGGAAGAAAAAGCCATGAACGA
GGACGACCATGCAAACGGCGGAGGTGGCAGCACGACCCATCCCTTGTACT
GCGGACCCCCCAGGGTTTCGGGGGTGGACCTGACCGTTGACAGGCGCCCC
GCTGATTTTGAAGACGAGCCTGAAGAAGCCAAACAGCATATTATGTCCAA
GCTCGTGGCGAACGCGATGGAGCAGCTGTCGCGCATGTGTTGGGCGGCCA
ACTGGGCGCTGACGGAGAAGGAGCAGGCGCAGCCGTCCGCGGTGCTGGCC
AAGCAGGGGAGGCCCAGGGGCCCCGTGGATGTGCGGCTCAACTTCGTGGT
GGGCGACGCGGTCGACACCTGCGACGCCCTGTGCCTCCTGTCCTCCGAGG
GCTTGAACGCCTGGGGCAAGGCTCGCGACGGCGATGAGTATTATGTCCAA
GCTCGTGGCGAACGCGATGGAGCAGCTGTCGCGCATGTGTTGGGCGGCCA
ACTGGGCGCTGACGGAGAAGGAGCAGGCGCAGCCGTCCGCGGTGCTGGCC
AAGCAGGGGAGGCCCAGGGGCCCCGTGGATGTGCGGCTCAACTTCGTGGT
GGGCGACGCGGTCGACACCTGCGACGCCCTGTGCCTCCTGTCCTCCGAGG
GCTTGAACGCCTGGGGCAAGGCTCGCGACGGCGATGAGTCGGGCAGGGTG
TGCAGCTTCATGCCCAACATGTCTCTCGCCCCGTCCCATCTAGAGCTCCG
GGACGTCGACGGCCCCGCAAGGTGATCGGGCAGGGTGTGCAGCTTCATGC
CCAACATGTCTCTCGCCCCGTCCCATCTAGAGCTCCGGGACGTCGACGGC
CCCGCAAGGTGA back to top
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