mRNA_L-elsbetiae_contig12154.1792.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12154.1792.1
Unique NamemRNA_L-elsbetiae_contig12154.1792.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig12154.1792.1 vs. uniprot
Match: A0A3G5FPT6_9PHAE (Ribosomal protein S4 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A3G5FPT6_9PHAE)

HSP 1 Score: 489 bits (1258), Expect = 1.130e-170
Identity = 234/265 (88.30%), Postives = 246/265 (92.83%), Query Frame = 2 
Query:  596 MRFKNRYKSCLWSRTNIWGDLLAKEKTFLRPKWDSIIAILRSQKRRHRPLVNIDRYRHPICHDYKFLQPRTRANQVFKYNRFGYRNTLSLLFCLRRFYGDLGHKAFKNLCKPAFNLKDPYQKLLGSLEGRLDMCLYRLGFFHSIYYSRQAILHNKVLVNGEKIGHGGFILQKGDVVEFCSTHRAAIRTRLVARYKRFRSSHVRLERWRLSHRYKLELHLQPTPKWIQTDYSNLSFILSSDVCVPLIYPFRANVDEALWASKYGYL 1390
            MRFKNRYKSCLWSRTNIWGDLLAKE TFLRPKWD+IIAILRSQ+RRHRPLVNI RYRHPICH+YK L+PRTRANQVFKYNRFGYRNTLSL+FCLRRFYGDL HK FKN CKP F L+DP Q+LL SLEGRLDM LYRLGFFHSIYYSRQAILHNKVLVNGEKIG+G FILQKGD+VEFC T R+AIR RLVARYKRFRSS VRLER  LSHRYKLELHLQPTPKWIQTDYSNLSFILSSDVCVP++YPFRAN DEALWASKYGYL
Sbjct:    1 MRFKNRYKSCLWSRTNIWGDLLAKEHTFLRPKWDTIIAILRSQRRRHRPLVNIYRYRHPICHNYKLLKPRTRANQVFKYNRFGYRNTLSLVFCLRRFYGDLSHKGFKNFCKPFFKLRDPSQRLLSSLEGRLDMSLYRLGFFHSIYYSRQAILHNKVLVNGEKIGYGSFILQKGDLVEFCPTQRSAIRARLVARYKRFRSSMVRLERSNLSHRYKLELHLQPTPKWIQTDYSNLSFILSSDVCVPIVYPFRANFDEALWASKYGYL 265
[Close]
BLAST of mRNA_L-elsbetiae_contig12154.1792.1 vs. uniprot
Match: E6ZEQ6_ECTSI (Ribosomal protein S4 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=E6ZEQ6_ECTSI)

HSP 1 Score: 485 bits (1249), Expect = 2.640e-169
Identity = 229/265 (86.42%), Postives = 241/265 (90.94%), Query Frame = 2 
Query:  596 MRFKNRYKSCLWSRTNIWGDLLAKEKTFLRPKWDSIIAILRSQKRRHRPLVNIDRYRHPICHDYKFLQPRTRANQVFKYNRFGYRNTLSLLFCLRRFYGDLGHKAFKNLCKPAFNLKDPYQKLLGSLEGRLDMCLYRLGFFHSIYYSRQAILHNKVLVNGEKIGHGGFILQKGDVVEFCSTHRAAIRTRLVARYKRFRSSHVRLERWRLSHRYKLELHLQPTPKWIQTDYSNLSFILSSDVCVPLIYPFRANVDEALWASKYGYL 1390
            MR KNRYKSCLWSRTNIWGDLL+KEKTFLRPKWDSIIAILRSQKRRHRPL+NI+RYRHPICHDY+FL+PRTR NQVFKYNR GYRNTLSLL CL+RFYGDLGHKAFK  C+  F  KD   KLL SLEGRLDMCLYRLGFFHSIYYSRQAILHNKVLVNG+KIGHGGF+LQKGD VEFC T RAAIR RLVARYKRFRS HVRLERWRLSHRYKLELHLQPTPKWIQTDYSNLSFILSSD C   ++PFRAN+DEALW SKYGYL
Sbjct:    1 MRLKNRYKSCLWSRTNIWGDLLSKEKTFLRPKWDSIIAILRSQKRRHRPLININRYRHPICHDYRFLKPRTRPNQVFKYNRIGYRNTLSLLLCLKRFYGDLGHKAFKGFCQSGFKSKDSSLKLLSSLEGRLDMCLYRLGFFHSIYYSRQAILHNKVLVNGKKIGHGGFVLQKGDFVEFCPTQRAAIRARLVARYKRFRSPHVRLERWRLSHRYKLELHLQPTPKWIQTDYSNLSFILSSDACAFALFPFRANIDEALWVSKYGYL 265
[Close]
BLAST of mRNA_L-elsbetiae_contig12154.1792.1 vs. uniprot
Match: A0A089MX47_PETFA (Ribosomal protein S4 n=2 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A089MX47_PETFA)

HSP 1 Score: 480 bits (1236), Expect = 2.500e-167
Identity = 223/265 (84.15%), Postives = 248/265 (93.58%), Query Frame = 2 
Query:  596 MRFKNRYKSCLWSRTNIWGDLLAKEKTFLRPKWDSIIAILRSQKRRHRPLVNIDRYRHPICHDYKFLQPRTRANQVFKYNRFGYRNTLSLLFCLRRFYGDLGHKAFKNLCKPAFNLKDPYQKLLGSLEGRLDMCLYRLGFFHSIYYSRQAILHNKVLVNGEKIGHGGFILQKGDVVEFCSTHRAAIRTRLVARYKRFRSSHVRLERWRLSHRYKLELHLQPTPKWIQTDYSNLSFILSSDVCVPLIYPFRANVDEALWASKYGYL 1390
            MRFKN+YKSCLWSRTNIWGDLLAKE+TFLRPKWDS+IAILRSQKRRHRPLVNI+RYRHPICHDY++L+PR+RANQVFKYNR GYRNTLSLL CLRRFYGDL HK+FKN C PAF  KDP Q LL +LEGRLD+CLYRLGFFHSIYYSRQAILHNKVL+NG+KIGH GFILQKGD VEFCS+ R AI+ RLVAR+KRFRSS++RLERWRLSHRYKL+LHLQPTPKWIQTDYSNLSFI+SS+V VP++YPFRAN+DEALWASKY Y+
Sbjct:    1 MRFKNKYKSCLWSRTNIWGDLLAKEETFLRPKWDSMIAILRSQKRRHRPLVNINRYRHPICHDYRYLKPRSRANQVFKYNRVGYRNTLSLLLCLRRFYGDLSHKSFKNFCHPAFKSKDPSQNLLSALEGRLDICLYRLGFFHSIYYSRQAILHNKVLINGKKIGHCGFILQKGDFVEFCSSQRPAIKARLVARFKRFRSSYIRLERWRLSHRYKLQLHLQPTPKWIQTDYSNLSFIISSEVGVPVMYPFRANIDEALWASKYAYI 265
[Close]
BLAST of mRNA_L-elsbetiae_contig12154.1792.1 vs. uniprot
Match: A0A0U1V7R9_9PHAE (Ribosomal protein S4 n=1 Tax=Colpomenia peregrina TaxID=27965 RepID=A0A0U1V7R9_9PHAE)

HSP 1 Score: 476 bits (1225), Expect = 1.170e-165
Identity = 221/265 (83.40%), Postives = 244/265 (92.08%), Query Frame = 2 
Query:  596 MRFKNRYKSCLWSRTNIWGDLLAKEKTFLRPKWDSIIAILRSQKRRHRPLVNIDRYRHPICHDYKFLQPRTRANQVFKYNRFGYRNTLSLLFCLRRFYGDLGHKAFKNLCKPAFNLKDPYQKLLGSLEGRLDMCLYRLGFFHSIYYSRQAILHNKVLVNGEKIGHGGFILQKGDVVEFCSTHRAAIRTRLVARYKRFRSSHVRLERWRLSHRYKLELHLQPTPKWIQTDYSNLSFILSSDVCVPLIYPFRANVDEALWASKYGYL 1390
            MRFKN+YKSCLWSRTNIWGDLLAKE+TFLRPKWDS+IAILRSQKRRHRPLVNIDRYRHPICHDYK+L+PR+RANQVFKYNR GYRNTLS+LFCLRRFYGDL HK FKN CKPA   KDP Q LL SLEGRLD+CLYRLGFFHSIYYSRQAILHNKVL+NG+KIGH GF+LQKGD VEFC + R AI+ RLVAR+KRFRSS++RLERWRLSHRYKL+LHLQPTP WIQTDY +LSFI+ S+V VP++YPFRAN+DEALWASKY YL
Sbjct:    1 MRFKNKYKSCLWSRTNIWGDLLAKEETFLRPKWDSMIAILRSQKRRHRPLVNIDRYRHPICHDYKYLKPRSRANQVFKYNRIGYRNTLSILFCLRRFYGDLNHKMFKNFCKPALKSKDPSQMLLNSLEGRLDICLYRLGFFHSIYYSRQAILHNKVLINGKKIGHCGFVLQKGDYVEFCPSQRGAIKARLVARFKRFRSSYIRLERWRLSHRYKLQLHLQPTPNWIQTDYPSLSFIVCSEVGVPVMYPFRANIDEALWASKYSYL 265
[Close]
BLAST of mRNA_L-elsbetiae_contig12154.1792.1 vs. uniprot
Match: A0A0U1V7B3_SCYLO (Ribosomal protein S4 n=1 Tax=Scytosiphon lomentaria TaxID=27967 RepID=A0A0U1V7B3_SCYLO)

HSP 1 Score: 475 bits (1222), Expect = 3.350e-165
Identity = 220/265 (83.02%), Postives = 248/265 (93.58%), Query Frame = 2 
Query:  596 MRFKNRYKSCLWSRTNIWGDLLAKEKTFLRPKWDSIIAILRSQKRRHRPLVNIDRYRHPICHDYKFLQPRTRANQVFKYNRFGYRNTLSLLFCLRRFYGDLGHKAFKNLCKPAFNLKDPYQKLLGSLEGRLDMCLYRLGFFHSIYYSRQAILHNKVLVNGEKIGHGGFILQKGDVVEFCSTHRAAIRTRLVARYKRFRSSHVRLERWRLSHRYKLELHLQPTPKWIQTDYSNLSFILSSDVCVPLIYPFRANVDEALWASKYGYL 1390
            MRFKN+YKSCLWSRT+IWGDLLAKE+TFLRPKWDS+IAILRSQKRRHRPLVNI+RYRH +CH+YK+++PR+RANQVFKYNR GYRNTLSLLFCLRRFYGDL HK+FKN C+PAF  KDP QKLL +LEGRLD+CLYRLGFFHSIYYSRQAILHNKVL+NG+KIGH  F+LQKGD VEFC + R+AIRTRLVARYKRFRSS++RLERWRLSH+YKL+LHLQPTP WIQTDYSNLSFILSS+V  P++YPFRANVDEALWASKY Y+
Sbjct:    1 MRFKNKYKSCLWSRTDIWGDLLAKEETFLRPKWDSMIAILRSQKRRHRPLVNINRYRHRLCHNYKYIKPRSRANQVFKYNRVGYRNTLSLLFCLRRFYGDLSHKSFKNFCRPAFKSKDPSQKLLSALEGRLDICLYRLGFFHSIYYSRQAILHNKVLINGKKIGHCCFVLQKGDYVEFCPSQRSAIRTRLVARYKRFRSSYIRLERWRLSHKYKLQLHLQPTPNWIQTDYSNLSFILSSEVSTPVMYPFRANVDEALWASKYSYI 265
[Close]
BLAST of mRNA_L-elsbetiae_contig12154.1792.1 vs. uniprot
Match: A0A8F0FCX2_9PHAE (Ribosomal protein S4 n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0FCX2_9PHAE)

HSP 1 Score: 461 bits (1185), Expect = 1.400e-159
Identity = 217/265 (81.89%), Postives = 241/265 (90.94%), Query Frame = 2 
Query:  596 MRFKNRYKSCLWSRTNIWGDLLAKEKTFLRPKWDSIIAILRSQKRRHRPLVNIDRYRHPICHDYKFLQPRTRANQVFKYNRFGYRNTLSLLFCLRRFYGDLGHKAFKNLCKPAFNLKDPYQKLLGSLEGRLDMCLYRLGFFHSIYYSRQAILHNKVLVNGEKIGHGGFILQKGDVVEFCSTHRAAIRTRLVARYKRFRSSHVRLERWRLSHRYKLELHLQPTPKWIQTDYSNLSFILSSDVCVPLIYPFRANVDEALWASKYGYL 1390
            MRFK+RYKSCLWSRT+IWGDLL KEKTFLRPKWD+I+ IL SQKRRHRPLVNI+RYR+P+CHDYKFL+PR RANQ+FKYNR GYRNTLSLLFCLRRFYGDL HK+FK  C+  F LKDP QKLLG+LEGRLD+ LYRLGFFHSI+YSRQAILH+KVLVNGEKIG+GGFILQKGD VEFC   R AIR RL+ARYK FRS+ VRLERWRLS R+K ELHLQPTPKWI TDYSNLSFILSS+VCVP+++PFRA+VDEALWASKYGYL
Sbjct:    1 MRFKHRYKSCLWSRTDIWGDLLGKEKTFLRPKWDTIMGILGSQKRRHRPLVNINRYRYPLCHDYKFLKPRARANQIFKYNRRGYRNTLSLLFCLRRFYGDLSHKSFKKFCRSMFALKDPSQKLLGALEGRLDITLYRLGFFHSIFYSRQAILHHKVLVNGEKIGYGGFILQKGDYVEFCPLQRPAIRARLLARYKHFRSAEVRLERWRLSPRFKYELHLQPTPKWIHTDYSNLSFILSSEVCVPIMFPFRADVDEALWASKYGYL 265
[Close]
BLAST of mRNA_L-elsbetiae_contig12154.1792.1 vs. uniprot
Match: Q94Z19_PYLLI (Ribosomal protein S4 n=1 Tax=Pylaiella littoralis TaxID=2885 RepID=Q94Z19_PYLLI)

HSP 1 Score: 458 bits (1179), Expect = 1.140e-158
Identity = 211/265 (79.62%), Postives = 240/265 (90.57%), Query Frame = 2 
Query:  596 MRFKNRYKSCLWSRTNIWGDLLAKEKTFLRPKWDSIIAILRSQKRRHRPLVNIDRYRHPICHDYKFLQPRTRANQVFKYNRFGYRNTLSLLFCLRRFYGDLGHKAFKNLCKPAFNLKDPYQKLLGSLEGRLDMCLYRLGFFHSIYYSRQAILHNKVLVNGEKIGHGGFILQKGDVVEFCSTHRAAIRTRLVARYKRFRSSHVRLERWRLSHRYKLELHLQPTPKWIQTDYSNLSFILSSDVCVPLIYPFRANVDEALWASKYGYL 1390
            MRFK++YKSCLWSRTNIWGDLLAKE TFL PKWDS+IAILRSQKRRHRPLVNI+RYRHPIC DY FLQPR+R+NQVFKYNR GYRNTLS +FCLRRFYGDL HK+FK+LC+P+F LK+P   LLG+LEGRLD+CLYRLGFFHSIYYSRQAI HNK++VNG+K+GH GF+L+KGD VEFC T R+AIR RL+ARYKRFRSS VR  RWRL+HRYKL+L LQPTPKWIQTDYS+LSF+LSS +C P +YPFR N+DEALWASKYGYL
Sbjct:    1 MRFKHKYKSCLWSRTNIWGDLLAKEHTFLSPKWDSMIAILRSQKRRHRPLVNINRYRHPICRDYHFLQPRSRSNQVFKYNRIGYRNTLSSIFCLRRFYGDLSHKSFKSLCQPSFKLKNPSLDLLGTLEGRLDICLYRLGFFHSIYYSRQAIQHNKIIVNGKKMGHSGFVLKKGDYVEFCPTQRSAIRARLIARYKRFRSSDVRSVRWRLAHRYKLQLQLQPTPKWIQTDYSSLSFLLSSSICPPFMYPFRVNLDEALWASKYGYL 265
[Close]
BLAST of mRNA_L-elsbetiae_contig12154.1792.1 vs. uniprot
Match: W5RG02_COSCS (Ribosomal protein S4 n=9 Tax=Laminariales TaxID=2886 RepID=W5RG02_COSCS)

HSP 1 Score: 458 bits (1178), Expect = 1.620e-158
Identity = 211/265 (79.62%), Postives = 239/265 (90.19%), Query Frame = 2 
Query:  596 MRFKNRYKSCLWSRTNIWGDLLAKEKTFLRPKWDSIIAILRSQKRRHRPLVNIDRYRHPICHDYKFLQPRTRANQVFKYNRFGYRNTLSLLFCLRRFYGDLGHKAFKNLCKPAFNLKDPYQKLLGSLEGRLDMCLYRLGFFHSIYYSRQAILHNKVLVNGEKIGHGGFILQKGDVVEFCSTHRAAIRTRLVARYKRFRSSHVRLERWRLSHRYKLELHLQPTPKWIQTDYSNLSFILSSDVCVPLIYPFRANVDEALWASKYGYL 1390
            MRFK+RYKSCLWSRT+IWGDLL+KEKTFLRPKWDSII +L SQKRRHRPL NI+RYRHP+CHDY F++PR R NQ+FKYNR  YRNTLSLL C+RRFYGDL HKAFK  C+P  +LK P QKL+GSLEGRLD+ LYRLGFFHSIYYSRQAILHNKVLVNGEKIG+GGFILQKGD VEFC + R+AIR RLVARYKRFRS HV+LERWRLS+R+K EL+L PTPKW+QTDYSNLSFILSSD+C P++YPFR +VDEALWAS+YG+L
Sbjct:    1 MRFKHRYKSCLWSRTDIWGDLLSKEKTFLRPKWDSIIGVLGSQKRRHRPLANINRYRHPLCHDYNFVKPRVRPNQIFKYNRLSYRNTLSLLLCIRRFYGDLSHKAFKRFCQPLVSLKTPAQKLIGSLEGRLDISLYRLGFFHSIYYSRQAILHNKVLVNGEKIGYGGFILQKGDFVEFCPSQRSAIRARLVARYKRFRSFHVKLERWRLSNRFKFELYLYPTPKWVQTDYSNLSFILSSDICAPVMYPFRVDVDEALWASRYGHL 265
[Close]
BLAST of mRNA_L-elsbetiae_contig12154.1792.1 vs. uniprot
Match: S4S3Q3_LAMHY (Ribosomal protein S4 n=35 Tax=Laminariales TaxID=2886 RepID=S4S3Q3_LAMHY)

HSP 1 Score: 456 bits (1174), Expect = 6.560e-158
Identity = 210/265 (79.25%), Postives = 238/265 (89.81%), Query Frame = 2 
Query:  596 MRFKNRYKSCLWSRTNIWGDLLAKEKTFLRPKWDSIIAILRSQKRRHRPLVNIDRYRHPICHDYKFLQPRTRANQVFKYNRFGYRNTLSLLFCLRRFYGDLGHKAFKNLCKPAFNLKDPYQKLLGSLEGRLDMCLYRLGFFHSIYYSRQAILHNKVLVNGEKIGHGGFILQKGDVVEFCSTHRAAIRTRLVARYKRFRSSHVRLERWRLSHRYKLELHLQPTPKWIQTDYSNLSFILSSDVCVPLIYPFRANVDEALWASKYGYL 1390
            MRFK+RYKSCLWSRT+IWGDLL+KEKTFLRPKWDSII +L SQKRRHRPL NI+RYRHP+CHDY FL+PR R NQ FKYNR  YRNTLS+L  +RRFYGDL HKAFK  C+P  +LK+P QKL+G+LEGRLD+ LYRLGFFHSIYYSRQ+I HNKVLVNG+KIGHGGFILQKGD VEFC + R+AIR RLVARYKRFRSSHV+LERWRLS+R+K ELHLQPTPKW+QTDYSNLSFILSSDVC P++YPFR +VDEALW+S+Y YL
Sbjct:    1 MRFKHRYKSCLWSRTDIWGDLLSKEKTFLRPKWDSIIGVLGSQKRRHRPLANINRYRHPLCHDYNFLKPRVRPNQTFKYNRISYRNTLSILLSIRRFYGDLSHKAFKRFCQPLVSLKNPPQKLIGALEGRLDISLYRLGFFHSIYYSRQSIFHNKVLVNGKKIGHGGFILQKGDYVEFCPSQRSAIRARLVARYKRFRSSHVKLERWRLSNRFKFELHLQPTPKWVQTDYSNLSFILSSDVCAPVMYPFRVDVDEALWSSRYSYL 265
[Close]
BLAST of mRNA_L-elsbetiae_contig12154.1792.1 vs. uniprot
Match: A0A8F0K0K8_9PHAE (Ribosomal protein S4 n=3 Tax=Laminariales TaxID=2886 RepID=A0A8F0K0K8_9PHAE)

HSP 1 Score: 456 bits (1174), Expect = 6.560e-158
Identity = 209/265 (78.87%), Postives = 240/265 (90.57%), Query Frame = 2 
Query:  596 MRFKNRYKSCLWSRTNIWGDLLAKEKTFLRPKWDSIIAILRSQKRRHRPLVNIDRYRHPICHDYKFLQPRTRANQVFKYNRFGYRNTLSLLFCLRRFYGDLGHKAFKNLCKPAFNLKDPYQKLLGSLEGRLDMCLYRLGFFHSIYYSRQAILHNKVLVNGEKIGHGGFILQKGDVVEFCSTHRAAIRTRLVARYKRFRSSHVRLERWRLSHRYKLELHLQPTPKWIQTDYSNLSFILSSDVCVPLIYPFRANVDEALWASKYGYL 1390
            MRFK+RYKSCLWSRT+IWGDLL+K+KTFLRPKWDSII +L SQKRRHRPL NI+RYR+P+CHDY FL+PR R NQ+FKYNR  YRNTLSLL C+RRFYGDL HKAFKN CK   +LK+P QKL+G+LEGRLD+ LYRLGFFHSIYYSRQAILH+KVLVNG++IGHGGFILQKGD VEFC + R++IR RLV RYKRFRSS+V+LERWRLS+R+K +LHL PTPKW+QTDYSNLSFI+SSDVCVP+IYPFR +VDEALW SKYGYL
Sbjct:    1 MRFKHRYKSCLWSRTDIWGDLLSKDKTFLRPKWDSIIGVLSSQKRRHRPLANINRYRYPLCHDYNFLKPRVRPNQIFKYNRISYRNTLSLLLCIRRFYGDLNHKAFKNFCKSLVSLKNPPQKLIGALEGRLDVSLYRLGFFHSIYYSRQAILHSKVLVNGKRIGHGGFILQKGDFVEFCPSQRSSIRARLVGRYKRFRSSYVKLERWRLSNRFKFDLHLHPTPKWVQTDYSNLSFIMSSDVCVPVIYPFRVDVDEALWCSKYGYL 265
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12154.1792.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3G5FPT6_9PHAE1.130e-17088.30Ribosomal protein S4 n=1 Tax=Cladosiphon okamuranu... [more]
E6ZEQ6_ECTSI2.640e-16986.42Ribosomal protein S4 n=2 Tax=Ectocarpus siliculosu... [more]
A0A089MX47_PETFA2.500e-16784.15Ribosomal protein S4 n=2 Tax=Scytosiphonaceae TaxI... [more]
A0A0U1V7R9_9PHAE1.170e-16583.40Ribosomal protein S4 n=1 Tax=Colpomenia peregrina ... [more]
A0A0U1V7B3_SCYLO3.350e-16583.02Ribosomal protein S4 n=1 Tax=Scytosiphon lomentari... [more]
A0A8F0FCX2_9PHAE1.400e-15981.89Ribosomal protein S4 n=2 Tax=Laminariales TaxID=28... [more]
Q94Z19_PYLLI1.140e-15879.62Ribosomal protein S4 n=1 Tax=Pylaiella littoralis ... [more]
W5RG02_COSCS1.620e-15879.62Ribosomal protein S4 n=9 Tax=Laminariales TaxID=28... [more]
S4S3Q3_LAMHY6.560e-15879.25Ribosomal protein S4 n=35 Tax=Laminariales TaxID=2... [more]
A0A8F0K0K8_9PHAE6.560e-15878.87Ribosomal protein S4 n=3 Tax=Laminariales TaxID=28... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12154contigL-elsbetiae_contig12154:2200..3592 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score73.6
Seed ortholog evalue1.6e-10
Seed eggNOG ortholog1400524.KL370779_gene1279
Preferred namerpsD
KEGG koko:K02986
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006417,GO:0006450,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0015935,GO:0019222,GO:0019843,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032268,GO:0032270,GO:0032991,GO:0034248,GO:0034250,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0045727,GO:0045903,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0060255,GO:0065007,GO:0065008,GO:0080090,GO:0097159,GO:1901363,GO:1990904,GO:2000112
EggNOG free text desc.One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
EggNOG OGs1MW0U@1224,2TRQH@28211,4BPEE@82117,COG0522@1,COG0522@2
COG Functional cat.J
Best tax levelunclassified Alphaproteobacteria
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons1
Model size1393
Cds size798
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815416.1702068-CDS-L-elsbetiae_contig12154:2199..29971622815416.1702068-CDS-L-elsbetiae_contig12154:2199..2997Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12154 2200..2997 -
1691682886.9719954-CDS-L-elsbetiae_contig12154:2199..29971691682886.9719954-CDS-L-elsbetiae_contig12154:2199..2997Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12154 2200..2997 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815416.1859777-UTR-L-elsbetiae_contig12154:2997..35921622815416.1859777-UTR-L-elsbetiae_contig12154:2997..3592Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12154 2998..3592 -
1691682886.9859118-UTR-L-elsbetiae_contig12154:2997..35921691682886.9859118-UTR-L-elsbetiae_contig12154:2997..3592Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12154 2998..3592 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12154.1792.1prot_L-elsbetiae_contig12154.1792.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12154 2200..2997 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12154.1792.1

>prot_L-elsbetiae_contig12154.1792.1 ID=prot_L-elsbetiae_contig12154.1792.1|Name=mRNA_L-elsbetiae_contig12154.1792.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=266bp
MRFKNRYKSCLWSRTNIWGDLLAKEKTFLRPKWDSIIAILRSQKRRHRPL
VNIDRYRHPICHDYKFLQPRTRANQVFKYNRFGYRNTLSLLFCLRRFYGD
LGHKAFKNLCKPAFNLKDPYQKLLGSLEGRLDMCLYRLGFFHSIYYSRQA
ILHNKVLVNGEKIGHGGFILQKGDVVEFCSTHRAAIRTRLVARYKRFRSS
HVRLERWRLSHRYKLELHLQPTPKWIQTDYSNLSFILSSDVCVPLIYPFR
ANVDEALWASKYGYL*
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mRNA from alignment at L-elsbetiae_contig12154:2200..3592-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12154.1792.1 ID=mRNA_L-elsbetiae_contig12154.1792.1|Name=mRNA_L-elsbetiae_contig12154.1792.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1393bp|location=Sequence derived from alignment at L-elsbetiae_contig12154:2200..3592- (Laminarionema elsbetiae ELsaHSoW15)
ATGTTAAATAAAAAGCACTCACGTCTTATTTCTTTTTTTGTTAATTCTTC
CGGTTATTTAGTCCCGCGTCCTTCTAATGAGTACGTTAAAATTTCAAAAA
CAATTTACCCTTTTCTTTTAGGTAAGCGAAATATTCACTATTTTTATGAT
CTTGAAAAGAGTTTGTATGGTATTCGTGCAACATTGGAAGTTTTAAAAAA
TATAGTAGCTAATGAAGGTAAAGTCCTTTTTATTAGTAATTCACCTATAC
TTGAACTTCATTTTGCTTTAGAAACAAATTTAAATATTATAAAGTGGAAA
AGAGGGTCTATAGCTAAATCTAAAGACGCGGACTTAGTTTTTTTAAATGG
TGTTGGGGAAGAAAATTTGGTAGAAGCACATAGAAAATGCTTATTACTTG
CAAGCGTAGGTAGTTCTACTATGAGTAAAATAGCCTATCCTTTTAATCTC
AATGTAGATTCACCCTTATTATCTGATTGGTTTTTTGGCGCTGTCTATAC
GTCTTGCGTTCAGGGGAGACGTTTATCTAAAAGCAAAAAAAAATCAATTT
CAAGTTTTTTAGGTAAAGGGAAGGTTAAACAATTTAATATTAAAAATGAG
ATTTAAAAATAGATACAAATCTTGTTTATGGTCTAGAACTAATATTTGGG
GAGATCTTTTAGCAAAAGAAAAAACTTTTCTTCGTCCTAAATGGGATAGT
ATTATTGCTATTTTGCGTAGTCAAAAACGTCGTCATCGTCCTCTTGTAAA
TATTGATCGATATCGGCATCCAATTTGCCACGATTATAAATTTTTACAGC
CACGAACTAGGGCAAATCAAGTTTTTAAGTATAATCGTTTTGGATATCGT
AATACTTTATCACTTCTTTTTTGTCTTAGACGTTTCTATGGTGACTTAGG
CCATAAAGCTTTTAAAAATTTATGTAAGCCAGCTTTTAACTTAAAAGATC
CTTATCAAAAATTGTTAGGTAGTTTAGAAGGGCGTTTAGATATGTGTTTG
TATCGTTTGGGTTTTTTTCATTCAATTTATTATAGTCGTCAAGCCATTTT
ACATAATAAAGTTTTGGTTAATGGGGAAAAAATTGGTCACGGCGGTTTTA
TATTACAGAAAGGAGATGTTGTTGAATTTTGTTCCACACATAGAGCAGCT
ATTCGAACACGTCTTGTTGCACGATATAAGCGCTTTAGATCTTCTCATGT
ACGTTTGGAACGTTGGCGTTTATCACATCGTTACAAATTGGAGCTTCATT
TGCAACCTACTCCTAAGTGGATTCAAACTGATTATTCTAATTTAAGTTTT
ATACTTTCTTCTGATGTCTGTGTACCCCTTATTTATCCTTTCAGAGCTAA
TGTAGATGAAGCTCTTTGGGCTTCTAAATATGGTTATTTGTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12154:2200..3592-

>mRNA_L-elsbetiae_contig12154.1792.1 ID=mRNA_L-elsbetiae_contig12154.1792.1|Name=mRNA_L-elsbetiae_contig12154.1792.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1596bp|location=Sequence derived from alignment at L-elsbetiae_contig12154:2200..3592- (Laminarionema elsbetiae ELsaHSoW15)
ATGAGATTTAAAAATAGATACAAATCTTGTTTATGGTCTAGAACTAATAT
TTGGGGAGATCTTTTAGCAAAAGAAAAAACTTTTCTTCGTCCTAAATGGG
ATAGTATTATTGCTATTTTGCGTAGTCAAAAACGTCGTCATCGTCCTCTT
GTAAATATTGATCGATATCGGCATCCAATTTGCCACGATTATAAATTTTT
ACAGCCACGAACTAGGGCAAATCAAGTTTTTAAGTATAATCGTTTTGGAT
ATCGTAATACTTTATCACTTCTTTTTTGTCTTAGACGTTTCTATGGTGAC
TTAGGCCATAAAGCTTTTAAAAATTTATGTAAGCCAGCTTTTAACTTAAA
AGATCCTTATCAAAAATTGTTAGGTAGTTTAGAAGGGCGTTTAGATATGT
GTTTGTATCGTTTGGGTTTTTTTCATTCAATTTATTATAGTCGTCAAGCC
ATTTTACATAATAAAGTTTTGGTTAATGGGGAAAAAATTGGTCACGGCGG
TTTTATATTACAGAAAGGAGATGTTGTTGAATTTTGTTCCACACATAGAG
CAGCTATTCGAACACGTCTTGTTGCACGATATAAGCGCTTTAGATCTTCT
CATGTACGTTTGGAACGTTGGCGTTTATCACATCGTTACAAATTGGAGCT
TCATTTGCAACCTACTCCTAAGTGGATTCAAACTGATTATTCTAATTTAA
GTTTTATACTTTCTTCTGATGTCTGTGTACCCCTTATTTATCCTTTCAGA
GCTAATGTAGATGAAGCTCTTTGGGCTTCTAAATATGGTTATTTGTAAAT
GAGATTTAAAAATAGATACAAATCTTGTTTATGGTCTAGAACTAATATTT
GGGGAGATCTTTTAGCAAAAGAAAAAACTTTTCTTCGTCCTAAATGGGAT
AGTATTATTGCTATTTTGCGTAGTCAAAAACGTCGTCATCGTCCTCTTGT
AAATATTGATCGATATCGGCATCCAATTTGCCACGATTATAAATTTTTAC
AGCCACGAACTAGGGCAAATCAAGTTTTTAAGTATAATCGTTTTGGATAT
CGTAATACTTTATCACTTCTTTTTTGTCTTAGACGTTTCTATGGTGACTT
AGGCCATAAAGCTTTTAAAAATTTATGTAAGCCAGCTTTTAACTTAAAAG
ATCCTTATCAAAAATTGTTAGGTAGTTTAGAAGGGCGTTTAGATATGTGT
TTGTATCGTTTGGGTTTTTTTCATTCAATTTATTATAGTCGTCAAGCCAT
TTTACATAATAAAGTTTTGGTTAATGGGGAAAAAATTGGTCACGGCGGTT
TTATATTACAGAAAGGAGATGTTGTTGAATTTTGTTCCACACATAGAGCA
GCTATTCGAACACGTCTTGTTGCACGATATAAGCGCTTTAGATCTTCTCA
TGTACGTTTGGAACGTTGGCGTTTATCACATCGTTACAAATTGGAGCTTC
ATTTGCAACCTACTCCTAAGTGGATTCAAACTGATTATTCTAATTTAAGT
TTTATACTTTCTTCTGATGTCTGTGTACCCCTTATTTATCCTTTCAGAGC
TAATGTAGATGAAGCTCTTTGGGCTTCTAAATATGGTTATTTGTAA
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