mRNA_L-elsbetiae_contig1214.1784.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1214.1784.1 vs. uniprot
Match: D8LAY2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LAY2_ECTSI) HSP 1 Score: 349 bits (895), Expect = 7.490e-118 Identity = 194/289 (67.13%), Postives = 216/289 (74.74%), Query Frame = 1 Query: 1 DLDGHMGLQASGALATGRLVARITIGVVGQGYN--------KGLEEAVGRVVRHSIPTLRWITIRGGVGQDGRARVAPIVGELVLLSSKRHRVAPRLKRVELVAGATGVAKAGKAVAAGLWPALEVLSFSHCRGNAGHFKDLADGLRAGRAPFLRALEWDDQSSIRKRPVDDVILSALAGGMCPRLESLSFKDNHLFCPEYSIFYLKDALRACPNLRVLAMDCSRTPCRQLHDLARALRKGWMPKLDFLYVRATAPYRRSSDVELKALREAVASREPPVMLVSEIKTRL 843 DL HMGL+ASGALATGR + RITI V + N K LE+AVGRVVRHSIPTLR ITIRG +GRARV I+GELV LS+KRHRVAPRL RV LV GATGVAKAG+AVAAGLWPALEVL+FSHCR NAGHF+DLA GLR+G AP LR L WDDQSS+R VDDVIL AL+ G CP +E LSF N FCPE+SI YL++AL CP LR L MDCSRTP QL L AL G +P+L+ L VRATAPY R SDVEL AL+ A ASR PPV L +IKTRL Sbjct: 17 DLANHMGLEASGALATGRAIVRITITTVFESANESRHHARYKALEQAVGRVVRHSIPTLREITIRGCPTWNGRARVGAILGELVPLSAKRHRVAPRLSRVHLVDGATGVAKAGRAVAAGLWPALEVLTFSHCRANAGHFRDLARGLRSGLAPRLRVLGWDDQSSVRDASVDDVILGALSWGKCPLVERLSFTGNR-FCPEHSIGYLEEALWVCPRLRELRMDCSRTPHHQLRVLVGALVGGHVPRLERLLVRATAPYYRDSDVELLALKRAAASRSPPVELELQIKTRL 304
BLAST of mRNA_L-elsbetiae_contig1214.1784.1 vs. uniprot
Match: D7FWR8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWR8_ECTSI) HSP 1 Score: 332 bits (852), Expect = 2.290e-111 Identity = 185/281 (65.84%), Postives = 207/281 (73.67%), Query Frame = 1 Query: 1 DLDGHMGLQASGALATGRLVARITIGVVGQGYNKGLEEAVGRVVRHSIPTLRWITIRGGVGQDGRARVAPIVGELVLLSSKRHRVAPRLKRVELVAGATGVAKAGKAVAAGLWPALEVLSFSHCRGNAGHFKDLADGLRAGRAPFLRALEWDDQSSIRKRPVDDVILSALAGGMCPRLESLSFKDNHLFCPEYSIFYLKDALRACPNLRVLAMDCSRTPCRQLHDLARALRKGWMPKLDFLYVRATAPYRRSSDVELKALREAVASREPPVMLVSEIKTRL 843 +L HMGL ASGALATGR V RITI V + LE+A+ RVV+HSIPTLR I IRG GRARV I+GELV LS+KRHRVAPRL RV LV GATGVAKAG+AVAAGLWPALEVL+FSHCR NAGHF+DLA GLR+G AP LR L WDDQSS+R VDDVIL AL+ G CP +E LSF N FCPE+ I YL++ L CP LR L MDCSRTP QL LA AL G +P+L+ L VRATA Y R SDVEL AL+ A ASR PPV L +IKT L Sbjct: 21 ELTNHMGLDASGALATGRAVVRITITYVHHFQDPALEQAIRRVVQHSIPTLREIAIRGYPTWTGRARVGAILGELVPLSAKRHRVAPRLARVHLVDGATGVAKAGRAVAAGLWPALEVLTFSHCRANAGHFRDLARGLRSGLAPRLRVLGWDDQSSVRDVAVDDVILGALSWGQCPLVERLSFTGNR-FCPEHRIRYLEEMLWVCPRLRELRMDCSRTPHHQLSVLAGALAGGHVPRLERLLVRATARYYRDSDVELLALKRAAASRSPPVELELQIKTLL 300
BLAST of mRNA_L-elsbetiae_contig1214.1784.1 vs. uniprot
Match: A0A6H5KDB3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDB3_9PHAE) HSP 1 Score: 322 bits (825), Expect = 3.250e-105 Identity = 186/308 (60.39%), Postives = 212/308 (68.83%), Query Frame = 1 Query: 1 DLDGHMGLQASGALATGRLVARITIGVVGQGYNKGLEEAVGRVVRHSIPTLRWITIRGGVGQDGRARV-------------------------AP--IVGELVLLSSKRHRVAPRLKRVELVAGATGVAKAGKAVAAGLWPALEVLSFSHCRGNAGHFKDLADGLRAGRAPFLRALEWDDQSSIRKRPVDDVILSALAGGMCPRLESLSFKDNHLFCPEYSIFYLKDALRACPNLRVLAMDCSRTPCRQLHDLARALRKGWMPKLDFLYVRATAPYRRSSDVELKALREAVASREPPVMLVSEIKTRL 843 +L HMG+ ASGALATGR V RITI V + + LE+A+ RVV+HSIPTLR ITIRG GRAR AP I+GELV LS+KRHRVAPRL RV LV GATGVAKAG+AVA GLWPALEVL+FSHCR NAGHF+DLA GLR+G AP LR L WDDQSSIR VDDVIL+AL+ G CP +E LSF N FCPE+ I YL++ L CP LR L MDCSRTP +L LA AL G +P+L+ L VRATAPY R SDVEL+AL+ ASR PPV L +IKTRL Sbjct: 141 ELTDHMGIDASGALATGRAVVRITITHVHETQDPALEQAIRRVVQHSIPTLREITIRGYPTWTGRARPSGGSCSIQYPPCARSPSAGAPHGPDAPGAILGELVPLSAKRHRVAPRLARVHLVDGATGVAKAGRAVATGLWPALEVLTFSHCRANAGHFRDLARGLRSGLAPRLRVLGWDDQSSIRDVAVDDVILNALSWGQCPLVEHLSFTGNR-FCPEHRITYLEEMLWVCPRLRELRMDCSRTPHHELRVLAGALAGGHVPRLERLLVRATAPYYRDSDVELRALKRVAASRSPPVELELQIKTRL 447
BLAST of mRNA_L-elsbetiae_contig1214.1784.1 vs. uniprot
Match: D7FWR9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWR9_ECTSI) HSP 1 Score: 296 bits (759), Expect = 2.430e-94 Identity = 187/364 (51.37%), Postives = 210/364 (57.69%), Query Frame = 1 Query: 1 DLDGHMGLQASGALATGRLVARITIGVVGQGYNKGLEEAVGRVVRHSIPTLRWITIRGGVGQDGRARV--------------------------------------------------------------------------AP---------IVGELVLLSSKRHRVAPRLKRVELVAGATGVAKAGKAVAAGLWPALEVLSFSHCRGNAGHFKDLADGLRAGRAPFLRALEWDDQSSIRKRPVDDVILSALAGGMCPRLESLSFKDNHLFCPEYSIFYLKDALRACPNLRVLAMDCSRTPCRQLHDLARALRKGWMPKLDFLYVRATAPYRRSSDVELKALREAVASREPPVMLVSEIKTRL 843 +L HMGL ASGALATGR V RITI V + LE+A+ RVV+HSIPTLR I IR +GRARV AP I+GELV LS+KRHRVAPRL RV LV GATGVAKAG+AVAAGLWPALEVL+FSHCR NAGHF+DLA GLR+G AP LR L WDDQSS+R VDDVIL AL+ G CP +E LSF N FCPE+ I YL++ L CP LR L MDCSRTP QL LA AL G +P+L+ L VRATA Y R SDVEL AL+ A ASR PPV L +IKTRL Sbjct: 159 ELTNHMGLDASGALATGRAVVRITITHVLHAQDPALEQAIRRVVQHSIPTLREIAIRRYPTWNGRARVGAILGELVPLSAKRHRVAPRLARVHLVDGATGVAKAGRAVAAGLWPALEVLTFSHCRANAGHFRDLARGLRSGLAPRLRVLGVGAILGELVPLSAKRHRVAPRLARVHLVDGATGVAKAGRAVAAGLWPALEVLTFSHCRANAGHFRDLARGLRSGLAPRLRVLGWDDQSSVRDVAVDDVILGALSWGQCPLVERLSFTGNR-FCPEHRIRYLEEMLWVCPRLRELRMDCSRTPHHQLSVLAGALAGGHVPRLERLLVRATARYYRDSDVELLALKRAAASRSPPVELELQIKTRL 521
BLAST of mRNA_L-elsbetiae_contig1214.1784.1 vs. uniprot
Match: A0A6H5KU71_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU71_9PHAE) HSP 1 Score: 253 bits (646), Expect = 3.410e-81 Identity = 142/217 (65.44%), Postives = 158/217 (72.81%), Query Frame = 1 Query: 193 RARVAPIVGELVLLSSKRHRVAPRLKRVELVAGATGVAKAGKAVAAGLWPALEVLSFSHCRGNAGHFKDLADGLRAGRAPFLRALEWDDQSSIRKRPVDDVILSALAGGMCPRLESLSFKDNHLFCPEYSIFYLKDALRACPNLRVLAMDCSRTPCRQLHDLARALRKGWMPKLDFLYVRATAPYRRSSDVELKALREAVASREPPVMLVSEIKTRL 843 R RV I GELV LS+KRHRVA RL RV LV GATG AKAGKAVAAGL PALEV +FSHCR NAGHF+DLA GLR+G AP LR L WDDQS+IR +DDVIL AL+ G CP +E LSF FCPE+SI YL++ CP LR L MDCSRTP QL LA AL +P+L+ L VRATAPY R SDVEL AL+ A ASR PPV L +IKTRL Sbjct: 11 RPRVGAIRGELVPLSAKRHRVARRLARVHLVDGATGAAKAGKAVAAGLRPALEVPTFSHCRANAGHFRDLARGLRSGLAPRLRVLGWDDQSTIRDAALDDVILGALSWGHCPLVERLSFTGTR-FCPEHSIRYLEEMFWVCPRLRELRMDCSRTPHHQLRVLAGALAGEHVPRLERLLVRATAPYYRDSDVELLALKLAAASRSPPVALELQIKTRL 226 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1214.1784.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1214.1784.1 >prot_L-elsbetiae_contig1214.1784.1 ID=prot_L-elsbetiae_contig1214.1784.1|Name=mRNA_L-elsbetiae_contig1214.1784.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=276bp MGLQASGALATGRLVARITIGVVGQGYNKGLEEAVGRVVRHSIPTLRWITback to top mRNA from alignment at L-elsbetiae_contig1214:8507..9632- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1214.1784.1 ID=mRNA_L-elsbetiae_contig1214.1784.1|Name=mRNA_L-elsbetiae_contig1214.1784.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1126bp|location=Sequence derived from alignment at L-elsbetiae_contig1214:8507..9632- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1214:8507..9632- >mRNA_L-elsbetiae_contig1214.1784.1 ID=mRNA_L-elsbetiae_contig1214.1784.1|Name=mRNA_L-elsbetiae_contig1214.1784.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1656bp|location=Sequence derived from alignment at L-elsbetiae_contig1214:8507..9632- (Laminarionema elsbetiae ELsaHSoW15)back to top |