mRNA_L-elsbetiae_contig1214.1784.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1214.1784.1
Unique NamemRNA_L-elsbetiae_contig1214.1784.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1214.1784.1 vs. uniprot
Match: D8LAY2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LAY2_ECTSI)

HSP 1 Score: 349 bits (895), Expect = 7.490e-118
Identity = 194/289 (67.13%), Postives = 216/289 (74.74%), Query Frame = 1
Query:    1 DLDGHMGLQASGALATGRLVARITIGVVGQGYN--------KGLEEAVGRVVRHSIPTLRWITIRGGVGQDGRARVAPIVGELVLLSSKRHRVAPRLKRVELVAGATGVAKAGKAVAAGLWPALEVLSFSHCRGNAGHFKDLADGLRAGRAPFLRALEWDDQSSIRKRPVDDVILSALAGGMCPRLESLSFKDNHLFCPEYSIFYLKDALRACPNLRVLAMDCSRTPCRQLHDLARALRKGWMPKLDFLYVRATAPYRRSSDVELKALREAVASREPPVMLVSEIKTRL 843
            DL  HMGL+ASGALATGR + RITI  V +  N        K LE+AVGRVVRHSIPTLR ITIRG    +GRARV  I+GELV LS+KRHRVAPRL RV LV GATGVAKAG+AVAAGLWPALEVL+FSHCR NAGHF+DLA GLR+G AP LR L WDDQSS+R   VDDVIL AL+ G CP +E LSF  N  FCPE+SI YL++AL  CP LR L MDCSRTP  QL  L  AL  G +P+L+ L VRATAPY R SDVEL AL+ A ASR PPV L  +IKTRL
Sbjct:   17 DLANHMGLEASGALATGRAIVRITITTVFESANESRHHARYKALEQAVGRVVRHSIPTLREITIRGCPTWNGRARVGAILGELVPLSAKRHRVAPRLSRVHLVDGATGVAKAGRAVAAGLWPALEVLTFSHCRANAGHFRDLARGLRSGLAPRLRVLGWDDQSSVRDASVDDVILGALSWGKCPLVERLSFTGNR-FCPEHSIGYLEEALWVCPRLRELRMDCSRTPHHQLRVLVGALVGGHVPRLERLLVRATAPYYRDSDVELLALKRAAASRSPPVELELQIKTRL 304          
BLAST of mRNA_L-elsbetiae_contig1214.1784.1 vs. uniprot
Match: D7FWR8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWR8_ECTSI)

HSP 1 Score: 332 bits (852), Expect = 2.290e-111
Identity = 185/281 (65.84%), Postives = 207/281 (73.67%), Query Frame = 1
Query:    1 DLDGHMGLQASGALATGRLVARITIGVVGQGYNKGLEEAVGRVVRHSIPTLRWITIRGGVGQDGRARVAPIVGELVLLSSKRHRVAPRLKRVELVAGATGVAKAGKAVAAGLWPALEVLSFSHCRGNAGHFKDLADGLRAGRAPFLRALEWDDQSSIRKRPVDDVILSALAGGMCPRLESLSFKDNHLFCPEYSIFYLKDALRACPNLRVLAMDCSRTPCRQLHDLARALRKGWMPKLDFLYVRATAPYRRSSDVELKALREAVASREPPVMLVSEIKTRL 843
            +L  HMGL ASGALATGR V RITI  V    +  LE+A+ RVV+HSIPTLR I IRG     GRARV  I+GELV LS+KRHRVAPRL RV LV GATGVAKAG+AVAAGLWPALEVL+FSHCR NAGHF+DLA GLR+G AP LR L WDDQSS+R   VDDVIL AL+ G CP +E LSF  N  FCPE+ I YL++ L  CP LR L MDCSRTP  QL  LA AL  G +P+L+ L VRATA Y R SDVEL AL+ A ASR PPV L  +IKT L
Sbjct:   21 ELTNHMGLDASGALATGRAVVRITITYVHHFQDPALEQAIRRVVQHSIPTLREIAIRGYPTWTGRARVGAILGELVPLSAKRHRVAPRLARVHLVDGATGVAKAGRAVAAGLWPALEVLTFSHCRANAGHFRDLARGLRSGLAPRLRVLGWDDQSSVRDVAVDDVILGALSWGQCPLVERLSFTGNR-FCPEHRIRYLEEMLWVCPRLRELRMDCSRTPHHQLSVLAGALAGGHVPRLERLLVRATARYYRDSDVELLALKRAAASRSPPVELELQIKTLL 300          
BLAST of mRNA_L-elsbetiae_contig1214.1784.1 vs. uniprot
Match: A0A6H5KDB3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDB3_9PHAE)

HSP 1 Score: 322 bits (825), Expect = 3.250e-105
Identity = 186/308 (60.39%), Postives = 212/308 (68.83%), Query Frame = 1
Query:    1 DLDGHMGLQASGALATGRLVARITIGVVGQGYNKGLEEAVGRVVRHSIPTLRWITIRGGVGQDGRARV-------------------------AP--IVGELVLLSSKRHRVAPRLKRVELVAGATGVAKAGKAVAAGLWPALEVLSFSHCRGNAGHFKDLADGLRAGRAPFLRALEWDDQSSIRKRPVDDVILSALAGGMCPRLESLSFKDNHLFCPEYSIFYLKDALRACPNLRVLAMDCSRTPCRQLHDLARALRKGWMPKLDFLYVRATAPYRRSSDVELKALREAVASREPPVMLVSEIKTRL 843
            +L  HMG+ ASGALATGR V RITI  V +  +  LE+A+ RVV+HSIPTLR ITIRG     GRAR                          AP  I+GELV LS+KRHRVAPRL RV LV GATGVAKAG+AVA GLWPALEVL+FSHCR NAGHF+DLA GLR+G AP LR L WDDQSSIR   VDDVIL+AL+ G CP +E LSF  N  FCPE+ I YL++ L  CP LR L MDCSRTP  +L  LA AL  G +P+L+ L VRATAPY R SDVEL+AL+   ASR PPV L  +IKTRL
Sbjct:  141 ELTDHMGIDASGALATGRAVVRITITHVHETQDPALEQAIRRVVQHSIPTLREITIRGYPTWTGRARPSGGSCSIQYPPCARSPSAGAPHGPDAPGAILGELVPLSAKRHRVAPRLARVHLVDGATGVAKAGRAVATGLWPALEVLTFSHCRANAGHFRDLARGLRSGLAPRLRVLGWDDQSSIRDVAVDDVILNALSWGQCPLVEHLSFTGNR-FCPEHRITYLEEMLWVCPRLRELRMDCSRTPHHELRVLAGALAGGHVPRLERLLVRATAPYYRDSDVELRALKRVAASRSPPVELELQIKTRL 447          
BLAST of mRNA_L-elsbetiae_contig1214.1784.1 vs. uniprot
Match: D7FWR9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWR9_ECTSI)

HSP 1 Score: 296 bits (759), Expect = 2.430e-94
Identity = 187/364 (51.37%), Postives = 210/364 (57.69%), Query Frame = 1
Query:    1 DLDGHMGLQASGALATGRLVARITIGVVGQGYNKGLEEAVGRVVRHSIPTLRWITIRGGVGQDGRARV--------------------------------------------------------------------------AP---------IVGELVLLSSKRHRVAPRLKRVELVAGATGVAKAGKAVAAGLWPALEVLSFSHCRGNAGHFKDLADGLRAGRAPFLRALEWDDQSSIRKRPVDDVILSALAGGMCPRLESLSFKDNHLFCPEYSIFYLKDALRACPNLRVLAMDCSRTPCRQLHDLARALRKGWMPKLDFLYVRATAPYRRSSDVELKALREAVASREPPVMLVSEIKTRL 843
            +L  HMGL ASGALATGR V RITI  V    +  LE+A+ RVV+HSIPTLR I IR     +GRARV                                                                          AP         I+GELV LS+KRHRVAPRL RV LV GATGVAKAG+AVAAGLWPALEVL+FSHCR NAGHF+DLA GLR+G AP LR L WDDQSS+R   VDDVIL AL+ G CP +E LSF  N  FCPE+ I YL++ L  CP LR L MDCSRTP  QL  LA AL  G +P+L+ L VRATA Y R SDVEL AL+ A ASR PPV L  +IKTRL
Sbjct:  159 ELTNHMGLDASGALATGRAVVRITITHVLHAQDPALEQAIRRVVQHSIPTLREIAIRRYPTWNGRARVGAILGELVPLSAKRHRVAPRLARVHLVDGATGVAKAGRAVAAGLWPALEVLTFSHCRANAGHFRDLARGLRSGLAPRLRVLGVGAILGELVPLSAKRHRVAPRLARVHLVDGATGVAKAGRAVAAGLWPALEVLTFSHCRANAGHFRDLARGLRSGLAPRLRVLGWDDQSSVRDVAVDDVILGALSWGQCPLVERLSFTGNR-FCPEHRIRYLEEMLWVCPRLRELRMDCSRTPHHQLSVLAGALAGGHVPRLERLLVRATARYYRDSDVELLALKRAAASRSPPVELELQIKTRL 521          
BLAST of mRNA_L-elsbetiae_contig1214.1784.1 vs. uniprot
Match: A0A6H5KU71_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU71_9PHAE)

HSP 1 Score: 253 bits (646), Expect = 3.410e-81
Identity = 142/217 (65.44%), Postives = 158/217 (72.81%), Query Frame = 1
Query:  193 RARVAPIVGELVLLSSKRHRVAPRLKRVELVAGATGVAKAGKAVAAGLWPALEVLSFSHCRGNAGHFKDLADGLRAGRAPFLRALEWDDQSSIRKRPVDDVILSALAGGMCPRLESLSFKDNHLFCPEYSIFYLKDALRACPNLRVLAMDCSRTPCRQLHDLARALRKGWMPKLDFLYVRATAPYRRSSDVELKALREAVASREPPVMLVSEIKTRL 843
            R RV  I GELV LS+KRHRVA RL RV LV GATG AKAGKAVAAGL PALEV +FSHCR NAGHF+DLA GLR+G AP LR L WDDQS+IR   +DDVIL AL+ G CP +E LSF     FCPE+SI YL++    CP LR L MDCSRTP  QL  LA AL    +P+L+ L VRATAPY R SDVEL AL+ A ASR PPV L  +IKTRL
Sbjct:   11 RPRVGAIRGELVPLSAKRHRVARRLARVHLVDGATGAAKAGKAVAAGLRPALEVPTFSHCRANAGHFRDLARGLRSGLAPRLRVLGWDDQSTIRDAALDDVILGALSWGHCPLVERLSFTGTR-FCPEHSIRYLEEMFWVCPRLRELRMDCSRTPHHQLRVLAGALAGEHVPRLERLLVRATAPYYRDSDVELLALKLAAASRSPPVALELQIKTRL 226          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1214.1784.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LAY2_ECTSI7.490e-11867.13Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FWR8_ECTSI2.290e-11165.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KDB3_9PHAE3.250e-10560.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWR9_ECTSI2.430e-9451.37Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5KU71_9PHAE3.410e-8165.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1214contigL-elsbetiae_contig1214:8507..9632 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size843
Cds size828
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1214.1784.1prot_L-elsbetiae_contig1214.1784.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1214 8507..9617 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815412.4600072-CDS-L-elsbetiae_contig1214:8506..92531622815412.4600072-CDS-L-elsbetiae_contig1214:8506..9253Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1214 8507..9253 -
1691682886.5990682-CDS-L-elsbetiae_contig1214:8506..92531691682886.5990682-CDS-L-elsbetiae_contig1214:8506..9253Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1214 8507..9253 -
1622815412.4713175-CDS-L-elsbetiae_contig1214:9536..96171622815412.4713175-CDS-L-elsbetiae_contig1214:9536..9617Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1214 9537..9617 -
1691682886.6094363-CDS-L-elsbetiae_contig1214:9536..96171691682886.6094363-CDS-L-elsbetiae_contig1214:9536..9617Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1214 9537..9617 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815412.4817102-UTR-L-elsbetiae_contig1214:9617..96321622815412.4817102-UTR-L-elsbetiae_contig1214:9617..9632Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1214 9618..9632 -
1691682886.6176426-UTR-L-elsbetiae_contig1214:9617..96321691682886.6176426-UTR-L-elsbetiae_contig1214:9617..9632Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1214 9618..9632 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1214.1784.1

>prot_L-elsbetiae_contig1214.1784.1 ID=prot_L-elsbetiae_contig1214.1784.1|Name=mRNA_L-elsbetiae_contig1214.1784.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=276bp
MGLQASGALATGRLVARITIGVVGQGYNKGLEEAVGRVVRHSIPTLRWIT
IRGGVGQDGRARVAPIVGELVLLSSKRHRVAPRLKRVELVAGATGVAKAG
KAVAAGLWPALEVLSFSHCRGNAGHFKDLADGLRAGRAPFLRALEWDDQS
SIRKRPVDDVILSALAGGMCPRLESLSFKDNHLFCPEYSIFYLKDALRAC
PNLRVLAMDCSRTPCRQLHDLARALRKGWMPKLDFLYVRATAPYRRSSDV
ELKALREAVASREPPVMLVSEIKTRL
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mRNA from alignment at L-elsbetiae_contig1214:8507..9632-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1214.1784.1 ID=mRNA_L-elsbetiae_contig1214.1784.1|Name=mRNA_L-elsbetiae_contig1214.1784.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1126bp|location=Sequence derived from alignment at L-elsbetiae_contig1214:8507..9632- (Laminarionema elsbetiae ELsaHSoW15)
GACCTCGATGGGCACATGGGACTGCAAGCGTCGGGGGCGTTGGCTACAGG CAGGCTAGTGGCCCGAATCACGATCGGCGTCGTCGGCCAAGGATACGTGG TGAGTACCATGGCGTGGATGACAAGGTATCGTACAGGTGGGGGATAACGG GTGAGACAGGAGAACCCTACTGTCTAGGAATGCATTATTAATAATCTAAA TACATTTACCACCACCCACCAGACACTGGTCTTGAAGCAGCAACGCACTT CGTACGTACACAGCAGTTACTAGAGTAGGTGTGATTCGAGAAAACAACCA AGCACGCTCTCTACCACGTGTACGGCTCATGGGTCTTACCCTGCGATTCG ACACCGTCCTTGCTCGTGTCAAAATACAGAACAAGGGCCTCGAGGAGGCT GTCGGGAGAGTTGTGCGTCACTCCATCCCCACCTTACGCTGGATCACGAT CCGCGGGGGCGTTGGTCAAGACGGCCGTGCCAGGGTGGCACCCATCGTCG GCGAGCTCGTGCTCCTCTCCTCCAAGCGCCACCGCGTAGCCCCGCGCCTG AAGCGGGTTGAGCTCGTCGCGGGGGCCACCGGCGTGGCTAAGGCGGGAAA GGCGGTGGCGGCGGGTCTTTGGCCGGCCCTGGAGGTGCTGTCGTTCTCCC ACTGCCGAGGCAACGCTGGGCATTTCAAGGATCTGGCCGACGGTCTCCGG GCAGGCCGCGCCCCCTTCCTGCGCGCGCTAGAATGGGACGATCAGTCCTC CATCCGCAAGAGGCCCGTCGACGATGTCATCTTGTCGGCCCTGGCCGGGG GCATGTGCCCTCGCCTCGAAAGCCTGAGCTTCAAGGACAACCATCTGTTC TGCCCGGAGTATAGCATCTTCTACCTCAAAGACGCACTTCGGGCTTGCCC TAACCTGCGGGTTCTGGCCATGGACTGCAGCCGTACACCCTGCCGGCAGT TGCATGACCTAGCTCGGGCTCTGAGGAAGGGATGGATGCCGAAGCTCGAT TTCCTCTACGTGCGTGCCACAGCTCCCTACCGCCGCAGCAGCGACGTGGA GCTGAAGGCTCTCAGGGAAGCCGTGGCGTCGAGGGAACCTCCGGTGATGC TGGTGTCCGAGATCAAAACACGTCTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1214:8507..9632-

>mRNA_L-elsbetiae_contig1214.1784.1 ID=mRNA_L-elsbetiae_contig1214.1784.1|Name=mRNA_L-elsbetiae_contig1214.1784.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1656bp|location=Sequence derived from alignment at L-elsbetiae_contig1214:8507..9632- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGACTGCAAGCGTCGGGGGCGTTGGCTACAGGCAGGCTAGTGGCCCG
AATCACGATCGGCGTCGTCGGCCAAGGATACATGGGACTGCAAGCGTCGG
GGGCGTTGGCTACAGGCAGGCTAGTGGCCCGAATCACGATCGGCGTCGTC
GGCCAAGGATACAACAAGGGCCTCGAGGAGGCTGTCGGGAGAGTTGTGCG
TCACTCCATCCCCACCTTACGCTGGATCACGATCCGCGGGGGCGTTGGTC
AAGACGGCCGTGCCAGGGTGGCACCCATCGTCGGCGAGCTCGTGCTCCTC
TCCTCCAAGCGCCACCGCGTAGCCCCGCGCCTGAAGCGGGTTGAGCTCGT
CGCGGGGGCCACCGGCGTGGCTAAGGCGGGAAAGGCGGTGGCGGCGGGTC
TTTGGCCGGCCCTGGAGGTGCTGTCGTTCTCCCACTGCCGAGGCAACGCT
GGGCATTTCAAGGATCTGGCCGACGGTCTCCGGGCAGGCCGCGCCCCCTT
CCTGCGCGCGCTAGAATGGGACGATCAGTCCTCCATCCGCAAGAGGCCCG
TCGACGATGTCATCTTGTCGGCCCTGGCCGGGGGCATGTGCCCTCGCCTC
GAAAGCCTGAGCTTCAAGGACAACCATCTGTTCTGCCCGGAGTATAGCAT
CTTCTACCTCAAAGACGCACTTCGGGCTTGCCCTAACCTGCGGGTTCTGG
CCATGGACTGCAGCCGTACACCCTGCCGGCAGTTGCATGACCTAGCTCGG
GCTCTGAGGAAGGGATGGATGCCGAAGCTCGATTTCCTCTACGTGCGTGC
CACAGCTCCCTACCGCCGCAGCAGCGACGTGGAGCTGAAGGCTCTCAGGG
AAGCCGTGGCGTCGAGGGAACCTCCGGTGATGCTGGTGTCCGAGATCAAA
ACACGTCTGAACAAGGGCCTCGAGGAGGCTGTCGGGAGAGTTGTGCGTCA
CTCCATCCCCACCTTACGCTGGATCACGATCCGCGGGGGCGTTGGTCAAG
ACGGCCGTGCCAGGGTGGCACCCATCGTCGGCGAGCTCGTGCTCCTCTCC
TCCAAGCGCCACCGCGTAGCCCCGCGCCTGAAGCGGGTTGAGCTCGTCGC
GGGGGCCACCGGCGTGGCTAAGGCGGGAAAGGCGGTGGCGGCGGGTCTTT
GGCCGGCCCTGGAGGTGCTGTCGTTCTCCCACTGCCGAGGCAACGCTGGG
CATTTCAAGGATCTGGCCGACGGTCTCCGGGCAGGCCGCGCCCCCTTCCT
GCGCGCGCTAGAATGGGACGATCAGTCCTCCATCCGCAAGAGGCCCGTCG
ACGATGTCATCTTGTCGGCCCTGGCCGGGGGCATGTGCCCTCGCCTCGAA
AGCCTGAGCTTCAAGGACAACCATCTGTTCTGCCCGGAGTATAGCATCTT
CTACCTCAAAGACGCACTTCGGGCTTGCCCTAACCTGCGGGTTCTGGCCA
TGGACTGCAGCCGTACACCCTGCCGGCAGTTGCATGACCTAGCTCGGGCT
CTGAGGAAGGGATGGATGCCGAAGCTCGATTTCCTCTACGTGCGTGCCAC
AGCTCCCTACCGCCGCAGCAGCGACGTGGAGCTGAAGGCTCTCAGGGAAG
CCGTGGCGTCGAGGGAACCTCCGGTGATGCTGGTGTCCGAGATCAAAACA
CGTCTG
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