mRNA_L-elsbetiae_contig12120.1773.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12120.1773.1
Unique NamemRNA_L-elsbetiae_contig12120.1773.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig12120.1773.1 vs. uniprot
Match: D8LH71_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LH71_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 3.740e-9
Identity = 47/107 (43.93%), Postives = 61/107 (57.01%), Query Frame = 3 
Query:  465 QENKLSTFDKDMKAFTRALDQAVLPKPKLLELYGGSRLLDDSVDVVHVAGGRHAGLRSPSKSSMGSPARRPMK-------------RKAGSMSAAEEAPATAQALAK 746
            +ENK+ TF+KDMKAFTRALDQA+LP+PKLL +Y         ++VV +  GR  GL+       GS ++ PM+             +    M A EE P TAQALAK
Sbjct:  204 KENKVGTFEKDMKAFTRALDQALLPRPKLLTMYSND---GSDMNVVDMTDGRQVGLQ-------GSTSKPPMRSXXXXXXXXXXXXKAVSPMPATEETPPTAQALAK 300
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12120.1773.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LH71_ECTSI3.740e-943.93Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12120contigL-elsbetiae_contig12120:4133..5686 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size996
Cds size342
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12120.1773.1prot_L-elsbetiae_contig12120.1773.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12120 4630..5529 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815411.588567-UTR-L-elsbetiae_contig12120:4132..46291622815411.588567-UTR-L-elsbetiae_contig12120:4132..4629Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12120 4133..4629 +
1691682886.0647016-UTR-L-elsbetiae_contig12120:4132..46291691682886.0647016-UTR-L-elsbetiae_contig12120:4132..4629Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12120 4133..4629 +
1622815411.6297708-UTR-L-elsbetiae_contig12120:5529..56861622815411.6297708-UTR-L-elsbetiae_contig12120:5529..5686Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12120 5530..5686 +
1691682886.1118352-UTR-L-elsbetiae_contig12120:5529..56861691682886.1118352-UTR-L-elsbetiae_contig12120:5529..5686Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12120 5530..5686 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815411.6020482-CDS-L-elsbetiae_contig12120:4629..46891622815411.6020482-CDS-L-elsbetiae_contig12120:4629..4689Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12120 4630..4689 +
1691682886.0806274-CDS-L-elsbetiae_contig12120:4629..46891691682886.0806274-CDS-L-elsbetiae_contig12120:4629..4689Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12120 4630..4689 +
1622815411.6157076-CDS-L-elsbetiae_contig12120:5247..55291622815411.6157076-CDS-L-elsbetiae_contig12120:5247..5529Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12120 5248..5529 +
1691682886.0995877-CDS-L-elsbetiae_contig12120:5247..55291691682886.0995877-CDS-L-elsbetiae_contig12120:5247..5529Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12120 5248..5529 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12120.1773.1

>prot_L-elsbetiae_contig12120.1773.1 ID=prot_L-elsbetiae_contig12120.1773.1|Name=mRNA_L-elsbetiae_contig12120.1773.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=114bp
MKAFTRALDQAVLPKPKLLELYGGSRLLDDSVDVVHVAGGRHAGLRSPSK
SSMGSPARRPMKRKAGSMSAAEEAPATAQALAKVCLVFSYKGFGRGGLPA
PPSSGFMEPGILR*
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mRNA from alignment at L-elsbetiae_contig12120:4133..5686+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12120.1773.1 ID=mRNA_L-elsbetiae_contig12120.1773.1|Name=mRNA_L-elsbetiae_contig12120.1773.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1554bp|location=Sequence derived from alignment at L-elsbetiae_contig12120:4133..5686+ (Laminarionema elsbetiae ELsaHSoW15)
CCTCTTGTTTCACCCCAGACACTCTGCTGGCGGGTCTGGCAAGCCCGGGA
AGAACGCGGGGCCCGCAGATGGGTTCTAGAAGGGGCCGTGGCTCTTTAGC
CAATCACAGGCGGCCAGATTATAGGCGGGTTCTAAAAGGGTTAAGAGTGT
TTGGGCGTTTGTGCTCGCCCGCTCTTCCTCTCTCTCCCTCTCTCTCTGTT
CATCTCTCTCACGTGCCACATTTTTCGAGCACGGAATCGGTCATCAGTTG
TGATTGGCAGGTTCATTCGTTGCGCAACATCACTGAAGTTTTGGGCAAGT
TTCAATCCTAACGTTGGCCTTCTCAAGAAGTGCTCAAGAAGTGGAGTTGC
ACGACCAATATTGCACCTGAACTTTCCGGTTCCCTGCCCACACCAGATGG
TGGTTTTGATTTTGTTGCAAAGTATGGTGTGTTGAAAGATCCTAAGCCTT
TCCCCTCCCCGCACCAGGAAAACAAGCTCAGCACCTTCGACAAGGACATG
AAGGCGTTTACGCGGGCATTGGATCAGGCAGTGCTACCGAAACCGAAGCT
CTTAGAGGTACGCACATCTATTCTCTGCGACTGTGTATTTCATGACCTTT
TATCGCCATGACGAAGATCATCGTGGTGCTTTTATGCGGAGTTTGTGCTG
GAACGCGCGCATGCAAGATACCTGGTGGATTCTCGTTCGGCCTCCGGAAT
TGCCATTGCTGTGTTTCGAATCAGAATGTGCTCTCAAGTCGCATGTGCCG
ATGCATTCGCTTGTCTACCGTCATACTTGTGAATCGTGGTCTATAAATTG
CAATGTGTTCCTTGCAGGCCTCTGAAACATTGTGATAAGGCCTCCTTCTT
TCAACCTTTTCGATGTCGTAGTAGCGCCGAAGACTCGAGCATTGTAGCGA
CGTGAAACAGAGTGTTATGGCATTCGAACTCTTTGTCTCCGGCCGCTCGG
TAACTTTTGATTGATGAGGTCGTGACGTCAGTGTCTACCTGTCTAAATAA
AGCCGATAAATAACATTGGAAACACTTCAACAGGAACATGGTGCATAGGC
GCATGCGCAGCCATTCACAGAATCCTTCCGCTCCTGACGTGTATGCTTGC
ACATGCCGCTCTCAGCTCTACGGGGGCAGCCGTCTCCTCGACGACAGTGT
GGATGTAGTGCACGTGGCGGGCGGCCGCCATGCCGGACTCCGTTCTCCCA
GCAAATCGTCAATGGGAAGTCCAGCGAGACGACCGATGAAAAGGAAGGCG
GGCTCCATGTCAGCTGCAGAAGAGGCGCCAGCTACTGCCCAAGCACTGGC
CAAGGTGTGCTTAGTATTTTCATACAAGGGCTTTGGACGCGGGGGCCTAC
CGGCCCCCCCGTCCTCCGGTTTCATGGAGCCTGGCATATTGCGATAGGTG
GTTACATTGGTTACCAAGGGTAACACATTTGAGACGGGAAGTGGACCTCA
GTGGTTGTCATGATTGTGTAAAGGTTGCGAACTTTATGTGAACTTCTTGT
GTAATTTGTCGGCTAGTCGCACCGGAGGCAGAAAAAATGATTATTGAGGC
AGAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12120:4133..5686+

>mRNA_L-elsbetiae_contig12120.1773.1 ID=mRNA_L-elsbetiae_contig12120.1773.1|Name=mRNA_L-elsbetiae_contig12120.1773.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=684bp|location=Sequence derived from alignment at L-elsbetiae_contig12120:4133..5686+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGGCGTTTACGCGGGCATTGGATCAGGCAGTGCTACCGAAACCGAA
GCTCTTAGAGATGAAGGCGTTTACGCGGGCATTGGATCAGGCAGTGCTAC
CGAAACCGAAGCTCTTAGAGCTCTACGGGGGCAGCCGTCTCCTCGACGAC
AGTGTGGATGTAGTGCACGTGGCGGGCGGCCGCCATGCCGGACTCCGTTC
TCCCAGCAAATCGTCAATGGGAAGTCCAGCGAGACGACCGATGAAAAGGA
AGGCGGGCTCCATGTCAGCTGCAGAAGAGGCGCCAGCTACTGCCCAAGCA
CTGGCCAAGGTGTGCTTAGTATTTTCATACAAGGGCTTTGGACGCGGGGG
CCTACCGGCCCCCCCGTCCTCCGGTTTCATGGAGCCTGGCATATTGCGAT
AGCTCTACGGGGGCAGCCGTCTCCTCGACGACAGTGTGGATGTAGTGCAC
GTGGCGGGCGGCCGCCATGCCGGACTCCGTTCTCCCAGCAAATCGTCAAT
GGGAAGTCCAGCGAGACGACCGATGAAAAGGAAGGCGGGCTCCATGTCAG
CTGCAGAAGAGGCGCCAGCTACTGCCCAAGCACTGGCCAAGGTGTGCTTA
GTATTTTCATACAAGGGCTTTGGACGCGGGGGCCTACCGGCCCCCCCGTC
CTCCGGTTTCATGGAGCCTGGCATATTGCGATAG
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