mRNA_L-elsbetiae_contig12103.1766.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12103.1766.1
Unique NamemRNA_L-elsbetiae_contig12103.1766.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig12103.1766.1 vs. uniprot
Match: D8LKW8_ECTSI (CCHC-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKW8_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 7.430e-27
Identity = 48/50 (96.00%), Postives = 49/50 (98.00%), Query Frame = 1 
Query:    1 KTSTNKQRCPVFCLAWAPAGVTRCITGNSSGEFTLWKDGAFNFVTILQVH 150
            KTSTNKQRCPVFCLAWAPAGVTRCITGNSSGEFTLWKDG+FNFVTILQ H
Sbjct:   74 KTSTNKQRCPVFCLAWAPAGVTRCITGNSSGEFTLWKDGSFNFVTILQAH 123
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BLAST of mRNA_L-elsbetiae_contig12103.1766.1 vs. uniprot
Match: A0A836CIR2_9STRA (WD40-repeat-containing domain protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIR2_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 1.720e-18
Identity = 38/50 (76.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:    1 KTSTNKQRCPVFCLAWAPAGVTRCITGNSSGEFTLWKDGAFNFVTILQVH 150
            K S NKQR PV  L+WAP G TRCITGNSSGEFTLWKDGAFNF  I+Q H
Sbjct:   74 KASVNKQRSPVNVLSWAPEGATRCITGNSSGEFTLWKDGAFNFERIMQAH 123
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BLAST of mRNA_L-elsbetiae_contig12103.1766.1 vs. uniprot
Match: A0A1Y3B3X5_EURMA (WD domain containing protein n=1 Tax=Euroglyphus maynei TaxID=6958 RepID=A0A1Y3B3X5_EURMA)

HSP 1 Score: 73.2 bits (178), Expect = 4.250e-15
Identity = 33/49 (67.35%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:    1 KTSTNKQRCPVFCLAWAPAGVTRCITGNSSGEFTLWKDGAFNFVTILQV 147
            +TSTNK RCP+FC+ W P G  R ITG+SSGEFTLW    FNF TILQV
Sbjct:  106 RTSTNKMRCPIFCVLWTPEG-RRLITGSSSGEFTLWNGLTFNFETILQV 153
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BLAST of mRNA_L-elsbetiae_contig12103.1766.1 vs. uniprot
Match: A0A8J5N1T3_HOMAM (Pre-mRNA 3' end processing protein WDR33-like 1 n=1 Tax=Homarus americanus TaxID=6706 RepID=A0A8J5N1T3_HOMAM)

HSP 1 Score: 74.7 bits (182), Expect = 6.050e-15
Identity = 33/50 (66.00%), Postives = 37/50 (74.00%), Query Frame = 1 
Query:    1 KTSTNKQRCPVFCLAWAPAGVTRCITGNSSGEFTLWKDGAFNFVTILQVH 150
            +TSTNK +CP+FCLAW P G  R +TG SSGEFTLW    FNF TILQ H
Sbjct:  113 RTSTNKAKCPIFCLAWTPEG-RRLVTGASSGEFTLWNGLTFNFETILQAH 161
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BLAST of mRNA_L-elsbetiae_contig12103.1766.1 vs. uniprot
Match: B3RZA6_TRIAD (Uncharacterized protein n=1 Tax=Trichoplax adhaerens TaxID=10228 RepID=B3RZA6_TRIAD)

HSP 1 Score: 75.9 bits (185), Expect = 7.620e-15
Identity = 34/50 (68.00%), Postives = 37/50 (74.00%), Query Frame = 1 
Query:    1 KTSTNKQRCPVFCLAWAPAGVTRCITGNSSGEFTLWKDGAFNFVTILQVH 150
            +TSTNKQRCP+FC+ W P G  R ITG SSGEFTLW    FNF TILQ H
Sbjct:  105 RTSTNKQRCPIFCVVWTPEG-RRLITGASSGEFTLWNGLTFNFETILQAH 153
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BLAST of mRNA_L-elsbetiae_contig12103.1766.1 vs. uniprot
Match: A0A369S7C3_9METZ (Pre-mRNA 3' end processing protein WDR33 n=1 Tax=Trichoplax sp. H2 TaxID=287889 RepID=A0A369S7C3_9METZ)

HSP 1 Score: 75.9 bits (185), Expect = 8.180e-15
Identity = 34/50 (68.00%), Postives = 37/50 (74.00%), Query Frame = 1 
Query:    1 KTSTNKQRCPVFCLAWAPAGVTRCITGNSSGEFTLWKDGAFNFVTILQVH 150
            +TSTNKQRCP+FC+ W P G  R ITG SSGEFTLW    FNF TILQ H
Sbjct:  105 RTSTNKQRCPIFCVVWTPEG-RRLITGASSGEFTLWNGLTFNFETILQAH 153
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BLAST of mRNA_L-elsbetiae_contig12103.1766.1 vs. uniprot
Match: A0A2R5LNS0_9ACAR (Putative polyadenylation factor i complex subunit pfs2 (Fragment) n=1 Tax=Ornithodoros turicata TaxID=34597 RepID=A0A2R5LNS0_9ACAR)

HSP 1 Score: 73.9 bits (180), Expect = 9.180e-15
Identity = 33/50 (66.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:    1 KTSTNKQRCPVFCLAWAPAGVTRCITGNSSGEFTLWKDGAFNFVTILQVH 150
            +TSTNK RCP+FC+ W P G  R ITG SSGEFTLW    FNF TILQ H
Sbjct:   79 RTSTNKMRCPIFCVVWTPEG-RRLITGASSGEFTLWNGLTFNFETILQAH 127
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BLAST of mRNA_L-elsbetiae_contig12103.1766.1 vs. uniprot
Match: A0A293LLG7_ORNER (Uncharacterized protein (Fragment) n=1 Tax=Ornithodoros erraticus TaxID=265619 RepID=A0A293LLG7_ORNER)

HSP 1 Score: 73.9 bits (180), Expect = 9.600e-15
Identity = 33/50 (66.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:    1 KTSTNKQRCPVFCLAWAPAGVTRCITGNSSGEFTLWKDGAFNFVTILQVH 150
            +TSTNK RCP+FC+ W P G  R ITG SSGEFTLW    FNF TILQ H
Sbjct:  123 RTSTNKMRCPIFCVVWTPEG-RRLITGASSGEFTLWNGLTFNFETILQAH 171
[Close]
BLAST of mRNA_L-elsbetiae_contig12103.1766.1 vs. uniprot
Match: B7PE45_IXOSC (WD-repeat protein, putative n=1 Tax=Ixodes scapularis TaxID=6945 RepID=B7PE45_IXOSC)

HSP 1 Score: 73.9 bits (180), Expect = 9.880e-15
Identity = 33/50 (66.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:    1 KTSTNKQRCPVFCLAWAPAGVTRCITGNSSGEFTLWKDGAFNFVTILQVH 150
            +TSTNK RCP+FC+ W P G  R ITG SSGEFTLW    FNF TILQ H
Sbjct:  108 RTSTNKMRCPIFCVVWTPEG-RRLITGASSGEFTLWNGLTFNFETILQAH 156
[Close]
BLAST of mRNA_L-elsbetiae_contig12103.1766.1 vs. uniprot
Match: A0A6G5ABE8_RHIMP (Putative polyadenylation factor i complex subunit pfs2 (Fragment) n=1 Tax=Rhipicephalus microplus TaxID=6941 RepID=A0A6G5ABE8_RHIMP)

HSP 1 Score: 73.9 bits (180), Expect = 1.000e-14
Identity = 33/50 (66.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:    1 KTSTNKQRCPVFCLAWAPAGVTRCITGNSSGEFTLWKDGAFNFVTILQVH 150
            +TSTNK RCP+FC+ W P G  R ITG SSGEFTLW    FNF TILQ H
Sbjct:  124 RTSTNKMRCPIFCVVWTPEG-RRLITGASSGEFTLWNGLTFNFETILQAH 172
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12103.1766.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKW8_ECTSI7.430e-2796.00CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A836CIR2_9STRA1.720e-1876.00WD40-repeat-containing domain protein (Fragment) n... [more]
A0A1Y3B3X5_EURMA4.250e-1567.35WD domain containing protein n=1 Tax=Euroglyphus m... [more]
A0A8J5N1T3_HOMAM6.050e-1566.00Pre-mRNA 3' end processing protein WDR33-like 1 n=... [more]
B3RZA6_TRIAD7.620e-1568.00Uncharacterized protein n=1 Tax=Trichoplax adhaere... [more]
A0A369S7C3_9METZ8.180e-1568.00Pre-mRNA 3' end processing protein WDR33 n=1 Tax=T... [more]
A0A2R5LNS0_9ACAR9.180e-1566.00Putative polyadenylation factor i complex subunit ... [more]
A0A293LLG7_ORNER9.600e-1566.00Uncharacterized protein (Fragment) n=1 Tax=Ornitho... [more]
B7PE45_IXOSC9.880e-1566.00WD-repeat protein, putative n=1 Tax=Ixodes scapula... [more]
A0A6G5ABE8_RHIMP1.000e-1466.00Putative polyadenylation factor i complex subunit ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12103contigL-elsbetiae_contig12103:362..511 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.5
Seed ortholog evalue2.2e-22
Seed eggNOG ortholog2880.D8LKW8
Preferred nameWDR33
KEGG koko:K15542
KEGG Pathwayko03015,map03015
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000228,GO:0000375,GO:0000377,GO:0000398,GO:0000785,GO:0000790,GO:0001650,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005847,GO:0005849,GO:0006139,GO:0006259,GO:0006281,GO:0006301,GO:0006351,GO:0006353,GO:0006366,GO:0006369,GO:0006378,GO:0006379,GO:0006396,GO:0006397,GO:0006403,GO:0006405,GO:0006406,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006974,GO:0007276,GO:0007283,GO:0008104,GO:0008150,GO:0008152,GO:0008380,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015031,GO:0015833,GO:0015931,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0018130,GO:0019438,GO:0019953,GO:0022414,GO:0031123,GO:0031124,GO:0031503,GO:0031974,GO:0031981,GO:0032501,GO:0032504,GO:0032774,GO:0032991,GO:0033036,GO:0033554,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043631,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044452,GO:0044454,GO:0044464,GO:0044703,GO:0045184,GO:0046483,GO:0046907,GO:0048232,GO:0048609,GO:0050657,GO:0050658,GO:0050896,GO:0051028,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0051704,GO:0051716,GO:0070013,GO:0070727,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0090304,GO:0090305,GO:0090501,GO:0097659,GO:0098787,GO:0098789,GO:1901360,GO:1901362,GO:1901576
EggNOG free text desc.mRNA cleavage
EggNOG OGsCOG2319@1,KOG0284@2759
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019
Exons1
Model size150
Cds size150
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815410.576013-CDS-L-elsbetiae_contig12103:361..5111622815410.576013-CDS-L-elsbetiae_contig12103:361..511Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12103 362..511 -
1691682885.5509996-CDS-L-elsbetiae_contig12103:361..5111691682885.5509996-CDS-L-elsbetiae_contig12103:361..511Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12103 362..511 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12103.1766.1prot_L-elsbetiae_contig12103.1766.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12103 362..511 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12103.1766.1

>prot_L-elsbetiae_contig12103.1766.1 ID=prot_L-elsbetiae_contig12103.1766.1|Name=mRNA_L-elsbetiae_contig12103.1766.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=50bp
KTSTNKQRCPVFCLAWAPAGVTRCITGNSSGEFTLWKDGAFNFVTILQVH
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mRNA from alignment at L-elsbetiae_contig12103:362..511-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12103.1766.1 ID=mRNA_L-elsbetiae_contig12103.1766.1|Name=mRNA_L-elsbetiae_contig12103.1766.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=150bp|location=Sequence derived from alignment at L-elsbetiae_contig12103:362..511- (Laminarionema elsbetiae ELsaHSoW15)
AAAACTTCCACCAACAAGCAGCGCTGCCCGGTCTTCTGCCTCGCCTGGGC
GCCGGCCGGGGTGACCCGCTGCATCACGGGCAACTCCAGCGGCGAGTTCA
CCCTCTGGAAGGACGGCGCTTTCAACTTCGTCACTATTCTACAGGTACAT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12103:362..511-

>mRNA_L-elsbetiae_contig12103.1766.1 ID=mRNA_L-elsbetiae_contig12103.1766.1|Name=mRNA_L-elsbetiae_contig12103.1766.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=300bp|location=Sequence derived from alignment at L-elsbetiae_contig12103:362..511- (Laminarionema elsbetiae ELsaHSoW15)
AAAACTTCCACCAACAAGCAGCGCTGCCCGGTCTTCTGCCTCGCCTGGGC
GCCGGCCGGGGTGACCCGCTGCATCACGGGCAACTCCAGCGGCGAGTTCA
CCCTCTGGAAGGACGGCGCTTTCAACTTCGTCACTATTCTACAGGTACAT
AAAACTTCCACCAACAAGCAGCGCTGCCCGGTCTTCTGCCTCGCCTGGGC
GCCGGCCGGGGTGACCCGCTGCATCACGGGCAACTCCAGCGGCGAGTTCA
CCCTCTGGAAGGACGGCGCTTTCAACTTCGTCACTATTCTACAGGTACAT
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