|
Homology
BLAST of mRNA_L-elsbetiae_contig121.1761.1 vs. uniprot
Match: A0A6H5KQA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQA9_9PHAE) HSP 1 Score: 230 bits (586), Expect = 4.930e-66 Identity = 179/420 (42.62%), Postives = 221/420 (52.62%), Query Frame = 2
Query: 221 MRPGPSAVRAFAAHPTPLLQRSLRGWISWPHREIPLLVKNVASSATQTVVTYGGRRRLSGTAGGGAGQGTFGK------DIADLNAEIEGFVGDLGDPDFDTTAPSGPRGDAQDASGNLRGKYTQPGAAQRETQSISAKQHRPRLTQADHPSVARITPGLDAEREQA-----DWLASLTTER----HRNANQTSGAKSNVLVLNGAACFVAGKLASTGEPQSDITKSMEAAAEECSLSLAVCTSNREDELLDRICEGGYDAIVYNPSGFSS-GFCIAGSGVFTTTTPVHP--TVALPSTTIHPDAIVQADGDKDALHGQQSMRSDSRQHCCRRGDFQRQVGNGSAIEYGLARARCPVVIVSPRDD-------TAPQTREPG--------QPAIGTISGFSGVVSYRLAMVAVASVLDGHR 1381
MRP P A A L R++R WI P +L K + + G GG G G DIADLN +I GFVGDLGDPDFDTT PS P A+ SG+ R A+RE + ++ + RLT ADHP GL ER++ DW S R ++ S A+ +VLVLNG ACF+AG LASTGEP+ + SME AA+E +LSL VCTSNREDELLDR+CEGGYDA+VYNPSGFS+ G + V T P H T A P++ +A + +D Q R D +H + R G+GSA+EYGL RA CPVVI+SP D +R P + A G I+GFSG VSYRLAM AV+SVLDG R
Sbjct: 1 MRP-PLAKTLAACKHLVLTDRAVRRWIGLPFSTTSMLAKRGGTCCFARSRSIATSTTSRGGKGGAPEDGERGSAEFWVHDIADLNKDISGFVGDLGDPDFDTT-PSPPP--ARAVSGSRRNAQ-----AEREDTPAAFQESQTRLTLADHPGKVE---GLAGERDEEIPMDDDWSTSFVKGYLEAVERKSSSGSRARRSVLVLNGPACFIAGTLASTGEPRGAVASSMEDAAQEFNLSLTVCTSNREDELLDRLCEGGYDAVVYNPSGFSNQGLRV----VVPTAAPTHQMMTDASPASNSSGNA-AHTEPAEDGFPQSQQSRVDDPRHKTWHDNVPRHSGSGSALEYGLERAGCPVVIISPGRDGNLGANMLQSTSRGPDVDLGCRSERGAEGIIAGFSGAVSYRLAMAAVSSVLDGFR 403
BLAST of mRNA_L-elsbetiae_contig121.1761.1 vs. uniprot
Match: D7G4H9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4H9_ECTSI) HSP 1 Score: 221 bits (563), Expect = 1.190e-62 Identity = 185/421 (43.94%), Postives = 226/421 (53.68%), Query Frame = 2
Query: 245 RAFAA--HPTPLLQRSLRGWISWPHREIPLLVKNVASSATQTVVTYGGRRRLSGTAG------GGAGQGTFG-------KDIADLNAEIEGFVGDLGDPDFDTTAPSGPRGDAQDASGNLRGKYTQPGAAQRETQSISAKQHRPRLTQADHPSVARITPGLDAEREQA-----DWLASLT-----TERHRNANQTSGAKSNVLVLNGAACFVAGKLASTGEPQSDITKSMEAAAEECSLSLAVCTSNREDELLDRICEGGYDAIVYNPSGFSSGFCIAGSGVFTTTTPVHPTV--ALPSTTIHPDAIVQADGDKDALHGQQSMRSDSRQHCCRRGDFQRQVGNGSAIEYGLARARCPVVIVSPRDD------TAPQT-REPG--------QPAIGTISGFSGVVSYRLAMVAVASVLDGHR 1381
+A AA HP P R++R WI +P + A + Y RRR TA GGA +G DIADLN +I GFVGDLGDPDFDT PS P A ASG+ R A+RE + ++ +PRLT ADHP GL +R++ DW L TE +N++ A+ VLVLNG ACF+AG LASTGEP+ + SME AA+E +LSL VCTSNREDELLDR+CEGGYDA+VYNPSGFS+ A V T +H T+ A P++ A+ D QQS + RQ + R G+GSA+EYGL RA CPVVI+SP D P T R P + A G I+GFSG VSYRLAM AV SVLDG R
Sbjct: 7 KALAACKHPVPT-DRAVRRWIG-----LPFNTTRSSVLAKRGGTCYFVRRRSIATATPPRWGKGGASEGDDRGSAAISVHDIADLNKDISGFVGDLGDPDFDTI-PSPPPDRA--ASGSRRDAQ-----AEREESPAAFQESQPRLTLADHPGKFE---GLHGQRDEEIPMDDDWSTPLVKGYLETEERKNSSGLR-ARRPVLVLNGPACFIAGTLASTGEPRGVVASSMEDAAQEFNLSLTVCTSNREDELLDRLCEGGYDAVVYNPSGFSNQGLRA---VVPTAAQIHRTMTDASPASNNSGTAVHTEPADDGFPQPQQSRVDNPRQKTWD-DNVPRHSGSGSALEYGLERAGCPVVIISPGRDGNLGANMLPSTSRGPDVDLGCRSERGAEGIIAGFSGAVSYRLAMAAVWSVLDGSR 405
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | mitochondrion |
Ec32 ortholog description | Dehydroquinase, class II |
Ec32 ortholog | Ec-07_000550.1 |
Exons | 4 |
Model size | 1759 |
Cds size | 1164 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622815409.9591432-UTR-L-elsbetiae_contig121:46408..46628 | 1622815409.9591432-UTR-L-elsbetiae_contig121:46408..46628 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig121 46409..46628 + |
1691682885.1042168-UTR-L-elsbetiae_contig121:46408..46628 | 1691682885.1042168-UTR-L-elsbetiae_contig121:46408..46628 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig121 46409..46628 + |
1622815410.0113025-UTR-L-elsbetiae_contig121:49362..49737 | 1622815410.0113025-UTR-L-elsbetiae_contig121:49362..49737 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig121 49363..49737 + |
1691682885.1590095-UTR-L-elsbetiae_contig121:49362..49737 | 1691682885.1590095-UTR-L-elsbetiae_contig121:49362..49737 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig121 49363..49737 + |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622815409.9736626-CDS-L-elsbetiae_contig121:46628..46929 | 1622815409.9736626-CDS-L-elsbetiae_contig121:46628..46929 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig121 46629..46929 + |
1691682885.1167557-CDS-L-elsbetiae_contig121:46628..46929 | 1691682885.1167557-CDS-L-elsbetiae_contig121:46628..46929 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig121 46629..46929 + |
1622815409.9834325-CDS-L-elsbetiae_contig121:47699..48016 | 1622815409.9834325-CDS-L-elsbetiae_contig121:47699..48016 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig121 47700..48016 + |
1691682885.131257-CDS-L-elsbetiae_contig121:47699..48016 | 1691682885.131257-CDS-L-elsbetiae_contig121:47699..48016 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig121 47700..48016 + |
1622815409.9928167-CDS-L-elsbetiae_contig121:48406..48480 | 1622815409.9928167-CDS-L-elsbetiae_contig121:48406..48480 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig121 48407..48480 + |
1691682885.1414285-CDS-L-elsbetiae_contig121:48406..48480 | 1691682885.1414285-CDS-L-elsbetiae_contig121:48406..48480 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig121 48407..48480 + |
1622815410.0028882-CDS-L-elsbetiae_contig121:48890..49362 | 1622815410.0028882-CDS-L-elsbetiae_contig121:48890..49362 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig121 48891..49362 + |
1691682885.1490655-CDS-L-elsbetiae_contig121:48890..49362 | 1691682885.1490655-CDS-L-elsbetiae_contig121:48890..49362 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig121 48891..49362 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig121.1761.1 >prot_L-elsbetiae_contig121.1761.1 ID=prot_L-elsbetiae_contig121.1761.1|Name=mRNA_L-elsbetiae_contig121.1761.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=388bp
MRPGPSAVRAFAAHPTPLLQRSLRGWISWPHREIPLLVKNVASSATQTVV TYGGRRRLSGTAGGGAGQGTFGKDIADLNAEIEGFVGDLGDPDFDTTAPS GPRGDAQDASGNLRGKYTQPGAAQRETQSISAKQHRPRLTQADHPSVARI TPGLDAEREQADWLASLTTERHRNANQTSGAKSNVLVLNGAACFVAGKLA STGEPQSDITKSMEAAAEECSLSLAVCTSNREDELLDRICEGGYDAIVYN PSGFSSGFCIAGSGVFTTTTPVHPTVALPSTTIHPDAIVQADGDKDALHG QQSMRSDSRQHCCRRGDFQRQVGNGSAIEYGLARARCPVVIVSPRDDTAP QTREPGQPAIGTISGFSGVVSYRLAMVAVASVLDGHR* back to topmRNA from alignment at L-elsbetiae_contig121:46409..49737+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig121.1761.1 ID=mRNA_L-elsbetiae_contig121.1761.1|Name=mRNA_L-elsbetiae_contig121.1761.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3329bp|location=Sequence derived from alignment at L-elsbetiae_contig121:46409..49737+ (Laminarionema elsbetiae ELsaHSoW15) TTGAGAGTTGAGAGAACCCACAGGATTGGTCGGGTACGAAGGAAACAACA
GGCGAAGGAGATCTGCAAGTGGACGACAGCTCATTGGTAGCCTTGGCCTG
CGCGAGAACTCACACGATAAGTGTGCTGCCACCCGTCTCCATCTCTTTGG
CACTCGCTTTTGCTTGGCGAATTTCCTCTCATCCAGAGCTGTTTAGATTA
AGTACACACCAGCGTTTTCGATGCGACCTGGGCCGTCGGCAGTCAGGGCT
TTTGCTGCTCATCCAACGCCTTTGCTGCAGCGGTCTTTACGTGGCTGGAT
CAGTTGGCCACACCGAGAAATCCCCCTGCTGGTGAAGAATGTTGCATCAT
CAGCGACCCAGACAGTCGTCACCTACGGCGGAAGGAGACGCTTATCGGGG
ACAGCTGGCGGGGGCGCAGGGCAGGGAACCTTCGGCAAAGATATTGCTGA
TCTAAACGCAGAAATCGAGGGTTTCGTTGGCGATCTAGGCGACCCAGATT
TTGACACCACAGCTCCATCGGGTAAATCGACGAGAGTACAGTGGTAGTCG
ACTGACTCTAACTACGACTGCTGCTGTAGATAGACTAGATAGACTACGTA
GTCTCAGATACAGCACTGTATGTAGATACATGGTGCTATGTACAGGCGCA
GTATGTACACCAGGTACAACTTCGTGTGTGTTGGCATTATCTCAATTGGT
AGTGATTAATTTTCGAGAAAGGGGGCGCCTGCCTCCTTTGTTGCTTCCTA
CAGCCGTATCCTTATGTATACCTGTTGCGGGCCTGGCCGGCGAGAACCCG
GCACGGAACCCCCCGGCTTTGTTGGGGTACCAAGATAGTGGCGGTCTTGG
TTGTTCCAGTTTTGTTTACCTCACATAGCGTGTAGAGGGGAGCGAAGGGC
TCCAGACTCGTATCTGTTATATTATTGCTTTGCTGGCCCTTCGGGTCCAT
TTTATTTTTCGTGTACCTTTTCTTAGGTATAAGTTAGCCTGTGGCCACGG
GAATTGACCGCATCAAGTGTTGGATTAGTACGGACATTGAGAGGTACTGG
ATGGAGAGATCGGAACAGTTTTTAATGTGAAGACAACATACATACATACA
TACAACAGACTATCTCTATCTAAAGGTATGCCGTAATACGTGGTGTTGTG
AGAGTTTGGCCTTCCAATAGTGAGGTCATTGTGTGATACGCCTACTACAT
ACCTTCTGTACTACACTGTTTTTGACGTCGAAACAGCAGTAGATAGACTA
ATGTACACGGCACGGCCATTTGTTTTCAAACACATCCTCAGGCCCTCGAG
GGGATGCGCAAGACGCATCAGGCAATCTCAGAGGCAAATATACCCAGCCT
GGCGCGGCCCAACGGGAAACGCAAAGCATCAGCGCGAAACAACACCGGCC
CCGCCTCACTCAGGCCGACCACCCCTCAGTCGCGCGCATCACCCCCGGGC
TCGATGCGGAGCGGGAACAGGCTGATTGGTTAGCGTCGCTTACCACGGAA
CGCCATCGAAACGCCAACCAAACTAGCGGGGCCAAGTCTAATGTTCTGGT
GCTTAACGGGGCGGCGTGTTTTGTTGCGGGGAAGCTAGCGAGCACAGGAG
AGCCGCAGGTGAGTTACATAGTTGACAAGTTGACCGGGAACAAGGATTTG
CAGCCTGAAGCTGTGGCATTACACACACTGGAGGAAACAGCCTCTCGTAG
TATCGCCCTTTCCGTGCCGCAGACAGGGTGCTTCCAAAAATCGGTTCAAA
TAGTTTTCGAAACCCATCCATTTTTGCTGCTCCGAACGGAAGTTTAGGTT
TGTGCAGATAAATACGTGCCTAGGGTGGGTTGTCATGTTTAATCGGATGG
GTGCGCTGCAGGGAGTGATGTAGAAGCCAAACTGTTCGGCCTGTGATCGT
GTTAGACTCCAGGACCTTTGCCAAGGCTACAATTGTTTTTTATTCGCTTA
ATTTGAAACCAATCTCCCCGCCATGTTTTTGTCCGTGAATTGGAGAAGAG
CGACATCACCAAGTCGATGGAAGCTGCCGCCGAGGAGTGCAGCCTGTCCC
TCGCCGTCTGCACTTCTAATCGGTCAGTTCATGACACGCTGACACCTTTC
GCGCCAGAGACTAGAAACATGTATCCGAGGTATTTGGCAAGAGCCCGCTG
TGTAGGCAAGTACAGACCAGGTACCCGGTACTGCTGTAAGTTGAAGCTTG
GTATTTCGACCGCGGCACGCTCGCCTTATCTTGTCTACGTCACATCGCAC
GTTGCAAGGTACCCGGCATCTTACAACCTTGAGCAGATTGCACCCACTGA
GTAGGGGCGAGCATGTTTATTTCAGCCCAATTCTTTGAACATCGGAATGC
GTCCGTAAGCGACGGTGCCGGTGAACGACACGCTGCTGTTTTGCATTTCG
CTATCCATCCTACGGCTGTGGCGTGTCTAATAGCATGAGCTTATCGCCTT
TGTGCCCCCCGGATCCGTCGATAACGTCGCAGCGAGGACGAGCTCCTGGA
CAGAATTTGTGAGGGCGGCTACGACGCGATCGTCTATAACCCTTCAGGGT
TTTCTTCAGGGTTTTGTATTGCAGGGTCCGGAGTATTCACCACCACCACC
CCTGTCCACCCGACGGTAGCGTTACCCTCAACGACAATTCATCCAGACGC
CATCGTTCAAGCCGACGGAGACAAGGATGCCCTTCATGGACAGCAGTCGA
TGCGGAGCGATTCACGGCAGCACTGCTGTAGGCGGGGTGATTTCCAAAGA
CAAGTCGGAAACGGAAGCGCTATCGAGTACGGTCTAGCTCGCGCTAGATG
CCCGGTCGTGATTGTCTCGCCACGAGATGACACAGCTCCACAAACACGTG
AACCCGGCCAGCCGGCCATAGGGACGATTTCAGGGTTCTCGGGGGTGGTG
TCGTACAGGTTGGCGATGGTGGCGGTAGCAAGCGTGCTGGACGGCCACCG
ATAAGTAGCGCGAGAAGATGGCAATGTTGTGATGACAGTGAAGTGTTCCA
GGGTCTCCTGGGCGCCCGTGCTTGGTGTGCGTCCATGTCCTGGGAGGGGG
AGCATGCGCGTAGTTTTATGCCCTTCAGGTCTTGTGCGCCGTGTTTTTGG
TGCATCTAAGAAGGCGGCCACGCCTCGCAGCCGCAAACAACCCCAAGGTT
AAGGTTGCTCTTCCTGTTGAGGTGGAAATGCCTTCCCCAACAACGTCACG
TGCAGCCGAATCGAGGGATCTGTAGAGTAACTGGTGAAAGGCTAAAGGCT
CAATGCAACAGCAGTAGTTTGCGGAGCACGAAGTTGTATACGCTAGGCGG
AAGACGATATTTTCAAAGGTCTTAACCCC back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig121:46409..49737+ >mRNA_L-elsbetiae_contig121.1761.1 ID=mRNA_L-elsbetiae_contig121.1761.1|Name=mRNA_L-elsbetiae_contig121.1761.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2328bp|location=Sequence derived from alignment at L-elsbetiae_contig121:46409..49737+ (Laminarionema elsbetiae ELsaHSoW15) ATGCGACCTGGGCCGTCGGCAGTCAGGGCTTTTGCTGCTCATCCAACGCC TTTGCTGCAGCGGTCTTTACGTGGCTGGATCAGTTGGCCACACCGAGAAA TCCCCCTGCTGGTGAAGAATGTTGCATCATCAGCGACCCAGACAGTCGTC ACCTACGGCGGAAGGAGACGCTTATCGGGGACAGCTGGCGGGGGCGCAGG GCAGGGAACCTTCGGCAAAGATATTGCTGATCTAAACGCAGAAATCGAGG GTTTCGTTGGCGATCTAGGCGACCCAGATTTTGACACCACAGCTCCATCG GATGCGACCTGGGCCGTCGGCAGTCAGGGCTTTTGCTGCTCATCCAACGC CTTTGCTGCAGCGGTCTTTACGTGGCTGGATCAGTTGGCCACACCGAGAA ATCCCCCTGCTGGTGAAGAATGTTGCATCATCAGCGACCCAGACAGTCGT CACCTACGGCGGAAGGAGACGCTTATCGGGGACAGCTGGCGGGGGCGCAG GGCAGGGAACCTTCGGCAAAGATATTGCTGATCTAAACGCAGAAATCGAG GGTTTCGTTGGCGATCTAGGCGACCCAGATTTTGACACCACAGCTCCATC GGGCCCTCGAGGGGATGCGCAAGACGCATCAGGCAATCTCAGAGGCAAAT ATACCCAGCCTGGCGCGGCCCAACGGGAAACGCAAAGCATCAGCGCGAAA CAACACCGGCCCCGCCTCACTCAGGCCGACCACCCCTCAGTCGCGCGCAT CACCCCCGGGCTCGATGCGGAGCGGGAACAGGCTGATTGGTTAGCGTCGC TTACCACGGAACGCCATCGAAACGCCAACCAAACTAGCGGGGCCAAGTCT AATGTTCTGGTGCTTAACGGGGCGGCGTGTTTTGTTGCGGGGAAGCTAGC GAGCACAGGAGAGCCGCAGGCCCTCGAGGGGATGCGCAAGACGCATCAGG CAATCTCAGAGGCAAATATACCCAGCCTGGCGCGGCCCAACGGGAAACGC AAAGCATCAGCGCGAAACAACACCGGCCCCGCCTCACTCAGGCCGACCAC CCCTCAGTCGCGCGCATCACCCCCGGGCTCGATGCGGAGCGGGAACAGGC TGATTGGTTAGCGTCGCTTACCACGGAACGCCATCGAAACGCCAACCAAA CTAGCGGGGCCAAGTCTAATGTTCTGGTGCTTAACGGGGCGGCGTGTTTT GTTGCGGGGAAGCTAGCGAGCACAGGAGAGCCGCAGAGCGACATCACCAA GTCGATGGAAGCTGCCGCCGAGGAGTGCAGCCTGTCCCTCGCCGTCTGCA CTTCTAATCGAGCGACATCACCAAGTCGATGGAAGCTGCCGCCGAGGAGT GCAGCCTGTCCCTCGCCGTCTGCACTTCTAATCGCGAGGACGAGCTCCTG GACAGAATTTGTGAGGGCGGCTACGACGCGATCGTCTATAACCCTTCAGG GTTTTCTTCAGGGTTTTGTATTGCAGGGTCCGGAGTATTCACCACCACCA CCCCTGTCCACCCGACGGTAGCGTTACCCTCAACGACAATTCATCCAGAC GCCATCGTTCAAGCCGACGGAGACAAGGATGCCCTTCATGGACAGCAGTC GATGCGGAGCGATTCACGGCAGCACTGCTGTAGGCGGGGTGATTTCCAAA GACAAGTCGGAAACGGAAGCGCTATCGAGTACGGTCTAGCTCGCGCTAGA TGCCCGGTCGTGATTGTCTCGCCACGAGATGACACAGCTCCACAAACACG TGAACCCGGCCAGCCGGCCATAGGGACGATTTCAGGGTTCTCGGGGGTGG TGTCGTACAGGTTGGCGATGGTGGCGGTAGCAAGCGTGCTGGACGGCCAC CGATAACGAGGACGAGCTCCTGGACAGAATTTGTGAGGGCGGCTACGACG CGATCGTCTATAACCCTTCAGGGTTTTCTTCAGGGTTTTGTATTGCAGGG TCCGGAGTATTCACCACCACCACCCCTGTCCACCCGACGGTAGCGTTACC CTCAACGACAATTCATCCAGACGCCATCGTTCAAGCCGACGGAGACAAGG ATGCCCTTCATGGACAGCAGTCGATGCGGAGCGATTCACGGCAGCACTGC TGTAGGCGGGGTGATTTCCAAAGACAAGTCGGAAACGGAAGCGCTATCGA GTACGGTCTAGCTCGCGCTAGATGCCCGGTCGTGATTGTCTCGCCACGAG ATGACACAGCTCCACAAACACGTGAACCCGGCCAGCCGGCCATAGGGACG ATTTCAGGGTTCTCGGGGGTGGTGTCGTACAGGTTGGCGATGGTGGCGGT AGCAAGCGTGCTGGACGGCCACCGATAA back to top
|