mRNA_L-elsbetiae_contig12096.1757.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig12096.1757.1 vs. uniprot
Match: D8LMA8_ECTSI (Nischarin/ IRAS/ imidazoline receptor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMA8_ECTSI) HSP 1 Score: 219 bits (557), Expect = 3.530e-62 Identity = 145/207 (70.05%), Postives = 163/207 (78.74%), Query Frame = 1 Query: 10 SVCRCGLLELDPSLRLLPGVRRLSLAHNRLSRVDFLQDCASLEELDLSHNRLVSVENVHAVVGNLRSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHALEEAGRLSTLPLVRRVWLEGNPLEEEEGKAYRVTVLSLLYKGRGADLDRMARLVNKNTFGGASAGRGVGEEEDTADGGPVGVALDGRLPSRKEIGQLTQLCFTKAAEV 630 S+C+CGL ELDPSLRLLP VRRLS+AHNRLSRVDF QDC SLE LDLSHNRL SVEN+HAV+GNLRSL XXXXXXXXXXXXXXXXXXXXXXXX L+EA RLSTLP++RRVWL GNP+E EEGK YRV+VLSLLY+G G +L A V+ GG+ G G G E G+ALDGRLPSRKE+ QL+QLCF +AAEV Sbjct: 561 SICKCGLRELDPSLRLLPRVRRLSMAHNRLSRVDFFQDCGSLEVLDLSHNRLTSVENIHAVLGNLRSLKLRGXXXXXXXXXXXXXXXXXXXXXXXXIEDLKEAARLSTLPMLRRVWLNGNPVEAEEGKDYRVSVLSLLYQGWGGELKGAAGRVSTMFAGGS--GDGSGRE--------TGIALDGRLPSRKELVQLSQLCFPRAAEV 757
BLAST of mRNA_L-elsbetiae_contig12096.1757.1 vs. uniprot
Match: A0A6H5K372_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K372_9PHAE) HSP 1 Score: 199 bits (506), Expect = 2.510e-55 Identity = 142/207 (68.60%), Postives = 161/207 (77.78%), Query Frame = 1 Query: 10 SVCRCGLLELDPSLRLLPGVRRLSLAHNRLSRVDFLQDCASLEELDLSHNRLVSVENVHAVVGNLRSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHALEEAGRLSTLPLVRRVWLEGNPLEEEEGKAYRVTVLSLLYKGRGADLDRMARLVNKNTFGGASAGRGVGEEEDTADGGPVGVALDGRLPSRKEIGQLTQLCFTKAAEV 630 SVC+CGL ELD SLRLLP VRRLSLA+NR SRVDF QDC SLE LDLSHNRL SVEN+HAV+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXX L+EA RLSTLP++RRVWL GNP+E EEGK YRV+VLSLLY+GRG +L +A + GG+ G G +T G+ALDGRLPSRKE+ QL+QLCF +AAEV Sbjct: 469 SVCKCGLRELDSSLRLLPRVRRLSLANNRFSRVDFFQDCGSLEVLDLSHNRLNSVENIHAVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDLKEAARLSTLPMLRRVWLNGNPVEAEEGKDYRVSVLSLLYQGRGGELKGVAGRFSTMLAGGS----GDGSRRET------GIALDGRLPSRKELVQLSQLCFPRAAEV 665
BLAST of mRNA_L-elsbetiae_contig12096.1757.1 vs. uniprot
Match: A0A835YXQ6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXQ6_9STRA) HSP 1 Score: 80.5 bits (197), Expect = 4.070e-14 Identity = 42/123 (34.15%), Postives = 60/123 (48.78%), Query Frame = 1 Query: 22 CGLLELDPSLRLLPGVRRLSLAHNRLSRVDFLQDCASLEELDLSHNRLVSVENVHAVVGNLRSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHALEEAGRLSTLPLVRRVWLEGNPLEEEEG 390 CG+ DPSLRLLP VR L L++NR+ ++F QDC L LDLSHN + + +VH +GN+ +L E+ RL LP + + L GNP+ ++G Sbjct: 267 CGVKATDPSLRLLPAVRYLDLSYNRIEDLEFFQDCIKLNHLDLSHNSISCLVDVHLTLGNVHTLLLGSNAIRTTEGLERLLALEVLDLEHNRIFDDEDVARLGLLPCLAHLTLRGNPVARQKG 389
BLAST of mRNA_L-elsbetiae_contig12096.1757.1 vs. uniprot
Match: A0A1D6JTJ8_MAIZE (Outer arm dynein light chain 1 protein n=1 Tax=Zea mays TaxID=4577 RepID=A0A1D6JTJ8_MAIZE) HSP 1 Score: 64.3 bits (155), Expect = 1.380e-8 Identity = 37/125 (29.60%), Postives = 55/125 (44.00%), Query Frame = 1 Query: 1 AFSSVCRCGLLELDPSLRLLPGVRRLSLAHNRLSRVDFLQDCASLEELDLSHNRLVSVENVHAVVGNLRSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHALEEAGRLSTLPLVRRVWLEGNPL 375 ++ S G++ +D SL+LLP L L+ N+ ++VD LQ C L LDL N L S+ ++ V + L E L TLPL++ +WLEGNP+ Sbjct: 178 SYVSCASNGVVLMDESLQLLPATETLDLSRNKFAKVDNLQKCTKLRNLDLGFNHLRSISSLSEVSSRIVKLVVRNNALTTVNGIENLKSLMGLDLSYNIISIFSELEILGTLPLLQNLWLEGNPI 302
BLAST of mRNA_L-elsbetiae_contig12096.1757.1 vs. uniprot
Match: A0A1D6JTK2_MAIZE (Outer arm dynein light chain 1 protein n=2 Tax=Zea mays TaxID=4577 RepID=A0A1D6JTK2_MAIZE) HSP 1 Score: 64.3 bits (155), Expect = 1.820e-8 Identity = 37/125 (29.60%), Postives = 55/125 (44.00%), Query Frame = 1 Query: 1 AFSSVCRCGLLELDPSLRLLPGVRRLSLAHNRLSRVDFLQDCASLEELDLSHNRLVSVENVHAVVGNLRSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHALEEAGRLSTLPLVRRVWLEGNPL 375 ++ S G++ +D SL+LLP L L+ N+ ++VD LQ C L LDL N L S+ ++ V + L E L TLPL++ +WLEGNP+ Sbjct: 178 SYVSCASNGVVLMDESLQLLPATETLDLSRNKFAKVDNLQKCTKLRNLDLGFNHLRSISSLSEVSSRIVKLVVRNNALTTVNGIENLKSLMGLDLSYNIISIFSELEILGTLPLLQNLWLEGNPI 302
BLAST of mRNA_L-elsbetiae_contig12096.1757.1 vs. uniprot
Match: UPI00053FF5C9 (uncharacterized protein LOC104901365 isoform X1 n=3 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053FF5C9) HSP 1 Score: 63.9 bits (154), Expect = 2.560e-8 Identity = 40/121 (33.06%), Postives = 55/121 (45.45%), Query Frame = 1 Query: 16 CRC-GLLELDPSLRLLPGVRRLSLAHNRLSRVDFLQDCASLEELDLSHNRLVSVENVHAVVGNLRSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHALEEAGRLSTLPLVRRVWLEGNPL 375 C C GL+ +D SL+LLP V L L+ N+ ++VD L+ C L LDL N+L SV + V + L E LS+LP ++ +WLEGNPL Sbjct: 175 CACNGLILMDESLQLLPAVETLDLSRNKFAKVDNLRKCTRLTHLDLGFNQLRSVASFGEVTYRILKLVLRNNALTTLRGIENLKSIEGLDVSYNIISNYVELEVLSSLPSLKNIWLEGNPL 295
BLAST of mRNA_L-elsbetiae_contig12096.1757.1 vs. uniprot
Match: C5WSP2_SORBI (Uncharacterized protein n=14 Tax=Andropogoneae TaxID=147429 RepID=C5WSP2_SORBI) HSP 1 Score: 62.8 bits (151), Expect = 6.340e-8 Identity = 36/125 (28.80%), Postives = 55/125 (44.00%), Query Frame = 1 Query: 1 AFSSVCRCGLLELDPSLRLLPGVRRLSLAHNRLSRVDFLQDCASLEELDLSHNRLVSVENVHAVVGNLRSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHALEEAGRLSTLPLVRRVWLEGNPL 375 ++ S G++ +D SL+LLP + L L+ N+ ++VD LQ C L LDL N L S+ ++ V + L E L TL L++ +WLEGNP+ Sbjct: 178 SYVSCASNGVVLMDESLQLLPAIETLDLSRNKFAKVDNLQKCTKLRNLDLGFNHLRSISSLSEVSSRIVKLVVRNNALTTVNGIENLKSLMGLDLSYNIISNFSELEMLGTLSLLQNLWLEGNPI 302
BLAST of mRNA_L-elsbetiae_contig12096.1757.1 vs. uniprot
Match: A0A8B9T151_ANAPL (Nischarin n=2 Tax=Anatinae TaxID=2068716 RepID=A0A8B9T151_ANAPL) HSP 1 Score: 61.2 bits (147), Expect = 2.170e-7 Identity = 61/114 (53.51%), Postives = 83/114 (72.81%), Query Frame = 1 Query: 34 ELDPSLRLLPGVRRLSLAHNRLSRVDFLQDCASLEELDLSHNRLVSVENVHAVVGNLRSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHALEEAGRLSTLPLVRRVWLEGNPL 375 ++D S++L+P + L L+HN +S V+ LQ +L LDLS+N+L S+E VH +GN++ XXXXXXXXXXXXXXXXXXXXXXXXXXXX ++E + +LP + +V L NPL Sbjct: 278 QIDDSVKLIPKIEFLDLSHNGVSLVENLQHLYNLVHLDLSYNKLTSLEGVHTKLGNIKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIEQIDEVKNIGSLPCLEKVILSSNPL 391
BLAST of mRNA_L-elsbetiae_contig12096.1757.1 vs. uniprot
Match: A0A0K9P8F5_ZOSMR (Uncharacterized protein n=1 Tax=Zostera marina TaxID=29655 RepID=A0A0K9P8F5_ZOSMR) HSP 1 Score: 57.8 bits (138), Expect = 2.960e-6 Identity = 42/149 (28.19%), Postives = 64/149 (42.95%), Query Frame = 1 Query: 4 FSSVCRCGLLELDPSLRLLPGVRRLSLAHNRLSRVDFLQDCASLEELDLSHNRLVSVENVHAVVGNLRSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHALEEAGRLSTLPLVRRVWLEGNPLEEEEGKAYRVTVLSLLYKGRGADLD 450 F S GL+ +D SL+LL V L L+ N++S+ D L +C L LDL N L ++ ++ + + L E LSTLP ++ +WLEGNP+ + YR V S ++ +LD Sbjct: 172 FVSCASNGLVLMDESLQLLTAVETLDLSRNKISKPDNLGNCMKLRHLDLGFNNLRTIASLGEISCPIVKLVLRNNALTTLRGIENLKEVEGIDLSYNIISNFFELEILSTLPSLKNLWLEGNPICC--ARWYRAHVYSFFHQPNELELD 318
BLAST of mRNA_L-elsbetiae_contig12096.1757.1 vs. uniprot
Match: K0TFM0_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TFM0_THAOC) HSP 1 Score: 55.5 bits (132), Expect = 1.930e-5 Identity = 36/139 (25.90%), Postives = 59/139 (42.45%), Query Frame = 1 Query: 31 LELDPSLRLLPGVRRLSLAHNRLSRVDF----LQDCASLEELDLSHNRLVSVENVHAVVGNLRSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHALEEAGRLSTLPLVRRVWLEGNPLEEEEGKAYRVTVLSLLYKGR 435 + P++ P + L+LA+N L + L L +DLSHNRL S++NV +GN+ L L +S+LP + + GNPLEE++ ++R+ V +L + R Sbjct: 351 IRKPPTMSRFPNLISLNLANNELFKTKTAFAGLASLPMLSSIDLSHNRLRSLDNVFTYIGNVTELILTGNEIISTRGLDRLFSLEKLCLDDNRISLLSNLAGISSLPFLANLDATGNPLEEDDPSSFRIKVFNLFREVR 489 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12096.1757.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig12096.1757.1 >prot_L-elsbetiae_contig12096.1757.1 ID=prot_L-elsbetiae_contig12096.1757.1|Name=mRNA_L-elsbetiae_contig12096.1757.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=210bp AFSSVCRCGLLELDPSLRLLPGVRRLSLAHNRLSRVDFLQDCASLEELDLback to top mRNA from alignment at L-elsbetiae_contig12096:316..4078+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig12096.1757.1 ID=mRNA_L-elsbetiae_contig12096.1757.1|Name=mRNA_L-elsbetiae_contig12096.1757.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3763bp|location=Sequence derived from alignment at L-elsbetiae_contig12096:316..4078+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig12096:316..4078+ >mRNA_L-elsbetiae_contig12096.1757.1 ID=mRNA_L-elsbetiae_contig12096.1757.1|Name=mRNA_L-elsbetiae_contig12096.1757.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1260bp|location=Sequence derived from alignment at L-elsbetiae_contig12096:316..4078+ (Laminarionema elsbetiae ELsaHSoW15)back to top |