mRNA_L-elsbetiae_contig12087.1753.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12087.1753.1
Unique NamemRNA_L-elsbetiae_contig12087.1753.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig12087.1753.1 vs. uniprot
Match: D7FL23_ECTSI (Origin-binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL23_ECTSI)

HSP 1 Score: 370 bits (950), Expect = 1.550e-118
Identity = 190/228 (83.33%), Postives = 205/228 (89.91%), Query Frame = 1 
Query:  427 DAIVAQEIEDMDDIDATELDDDWEGVMDKKNARDMLLHQDKLALRKYRAQKYFVDALTGQDVAFFEKHKKAILYRILQRDATAAELFAKNKEEVERARRVDMEDMVSQDYNVRTELFKLVKDVGYGGFDDYTTEVCLKEAGESDKIKLGIGAVQLVIGGSTKKNTTLAGVLKPWLLKYMGLKLQARRDGRGDKRRSMYSMKPCPDIEEFSLRGNSVYDRVMGPNIGSK 1110
            DAIVAQEIEDMD IDATELDD+WE VM+KK+ RDMLLHQDKLALRKY+AQK+F DALTGQDVAFFEKHKKAILYRIL+RDAT AELFAKNKEEVER RRVDMED+VSQDYNVRT L KLV+D GY GF D TTEVCLKEAGES +IKL IGAVQ ++GGSTKKNTTLAGVLKPWLLKYMGLKL  RRDGRG+KRR MY +KPCPDIEEFSLR N+VYDRVMG   G+K
Sbjct:  393 DAIVAQEIEDMDGIDATELDDEWEDVMNKKHTRDMLLHQDKLALRKYQAQKHFKDALTGQDVAFFEKHKKAILYRILERDATTAELFAKNKEEVERVRRVDMEDVVSQDYNVRTALLKLVRDAGYEGFGDDTTEVCLKEAGESAEIKLSIGAVQQLVGGSTKKNTTLAGVLKPWLLKYMGLKLHTRRDGRGEKRRMMYRVKPCPDIEEFSLRKNTVYDRVMGRKQGAK 620
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BLAST of mRNA_L-elsbetiae_contig12087.1753.1 vs. uniprot
Match: A0A6H5KBD5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBD5_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 3.170e-25
Identity = 68/127 (53.54%), Postives = 85/127 (66.93%), Query Frame = 1 
Query:  571 AQKYFVDALTGQDVAFFEKHKKAILYRILQRDATAAELFAKNKEEVERARRVDMEDMVSQDYNVRTELFKLVKDVGYGGFDDYTTEVCLKEAGESDKIKLGIGAVQLVIGGSTK--KNTTLAGVLKP 945
            AQKYF D LTG+DVAFFEK+KKAI+YRIL+R+AT  EL+ K   EVERAR   MED++SQDY    +   L  + G             +EAGES+++K  I AVQ ++ G TK  +NTTLAGVLKP
Sbjct:   14 AQKYFADPLTGEDVAFFEKNKKAIVYRILERNATPGELYDKIVLEVERARVHGMEDIISQDYYNECQESSLEANQGCRIRRARGPHHRSEEAGESNEVKFAIAAVQELVAGPTKNSRNTTLAGVLKP 140
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BLAST of mRNA_L-elsbetiae_contig12087.1753.1 vs. uniprot
Match: A0A7S3JUU6_9STRA (DNA helicase n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JUU6_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 5.690e-5
Identity = 31/70 (44.29%), Postives = 42/70 (60.00%), Query Frame = 1 
Query:    1 RRNPSAE-TKDLLFQSQSGKCAYCDKEIKANPADFDVDHVIPVSLGGPTCLTNLHLLCVTCHRAKSGRER 207
            RR P    +K++ F+ Q  KC +CD  +   PAD+ VDH+IP++L G   L NL  LC TCH  K+  ER
Sbjct:   87 RRQPGIRISKEVAFR-QKYKCNHCDCIL---PADYHVDHIIPIALNGSNDLNNLQALCRTCHDQKTRNER 152
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BLAST of mRNA_L-elsbetiae_contig12087.1753.1 vs. uniprot
Match: A0A415G505_9FIRM (HNH endonuclease n=1 Tax=Anaerobutyricum hallii TaxID=39488 RepID=A0A415G505_9FIRM)

HSP 1 Score: 53.5 bits (127), Expect = 8.440e-5
Identity = 25/65 (38.46%), Postives = 42/65 (64.62%), Query Frame = 1 
Query:    1 RRNPSAETKDLLFQSQSGKCAYCDKEIKANPADFDVDHVIPVSLGGPTCLTNLHLLCVTCHRAKS 195
            R++ S E + LL+Q   GKCA C K+I  +  + ++DH+IP+S+GG   + NL + C+  +R K+
Sbjct:   71 RKHFSQEVRKLLYQQAEGKCALCGKKITFD--EMELDHIIPISMGGADEVENLQVCCMPDNRYKA 133
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12087.1753.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FL23_ECTSI1.550e-11883.33Origin-binding protein n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5KBD5_9PHAE3.170e-2553.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3JUU6_9STRA5.690e-544.29DNA helicase n=1 Tax=Aureoumbra lagunensis TaxID=4... [more]
A0A415G505_9FIRM8.440e-538.46HNH endonuclease n=1 Tax=Anaerobutyricum hallii Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12087contigL-elsbetiae_contig12087:4346..5666 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionorigin-binding protein
Ec32 orthologEc-05_007030.1
Exons1
Model size1321
Cds size963
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12087.1753.1prot_L-elsbetiae_contig12087.1753.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12087 4655..5617 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815407.9946973-UTR-L-elsbetiae_contig12087:4345..46541622815407.9946973-UTR-L-elsbetiae_contig12087:4345..4654Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12087 4346..4654 +
1691682884.345294-UTR-L-elsbetiae_contig12087:4345..46541691682884.345294-UTR-L-elsbetiae_contig12087:4345..4654Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12087 4346..4654 +
1622815408.0223439-UTR-L-elsbetiae_contig12087:5617..56661622815408.0223439-UTR-L-elsbetiae_contig12087:5617..5666Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12087 5618..5666 +
1691682884.3617737-UTR-L-elsbetiae_contig12087:5617..56661691682884.3617737-UTR-L-elsbetiae_contig12087:5617..5666Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12087 5618..5666 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815408.009899-CDS-L-elsbetiae_contig12087:4654..56171622815408.009899-CDS-L-elsbetiae_contig12087:4654..5617Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12087 4655..5617 +
1691682884.3540006-CDS-L-elsbetiae_contig12087:4654..56171691682884.3540006-CDS-L-elsbetiae_contig12087:4654..5617Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12087 4655..5617 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12087.1753.1

>prot_L-elsbetiae_contig12087.1753.1 ID=prot_L-elsbetiae_contig12087.1753.1|Name=mRNA_L-elsbetiae_contig12087.1753.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=321bp
MHITAPGILGGDCSLAFSLSNAEKRKATKARATVPEPEPDAIVAQEIEDM
DDIDATELDDDWEGVMDKKNARDMLLHQDKLALRKYRAQKYFVDALTGQD
VAFFEKHKKAILYRILQRDATAAELFAKNKEEVERARRVDMEDMVSQDYN
VRTELFKLVKDVGYGGFDDYTTEVCLKEAGESDKIKLGIGAVQLVIGGST
KKNTTLAGVLKPWLLKYMGLKLQARRDGRGDKRRSMYSMKPCPDIEEFSL
RGNSVYDRVMGPNIGSKGFDGESVRPDCGDGSVVDPTPDIRQFMFATERL
CFDDPTVTRGTGGKRGASCM*
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mRNA from alignment at L-elsbetiae_contig12087:4346..5666+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12087.1753.1 ID=mRNA_L-elsbetiae_contig12087.1753.1|Name=mRNA_L-elsbetiae_contig12087.1753.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1321bp|location=Sequence derived from alignment at L-elsbetiae_contig12087:4346..5666+ (Laminarionema elsbetiae ELsaHSoW15)
CGGAGAAACCCTTCTGCCGAAACGAAGGATCTACTGTTTCAGTCGCAGAG
CGGCAAGTGCGCCTATTGTGACAAAGAAATAAAGGCCAATCCGGCAGATT
TTGACGTGGATCACGTAATTCCAGTATCGTTAGGAGGCCCAACATGCCTG
ACCAACCTCCACCTCTTGTGTGTGACGTGTCATCGAGCAAAATCGGGCCG
TGAACGATCTCGAGCATGTGTCACTCTTACTCCTCGAACGAGTGGGTGGG
AATCTACGCGTATCACAGCGAAGGGCATCCCTCGGGTCGTGGCGTCAGCG
AAGGGAGTGATGCACATAACAGCTCCCGGTATTTTAGGGGGGGATTGTAG
CCTGGCCTTTTCTCTAAGCAACGCGGAAAAGAGGAAGGCGACGAAAGCAC
GCGCGACGGTGCCCGAGCCCGAGCCAGACGCGATCGTCGCGCAAGAAATC
GAGGACATGGACGACATCGACGCCACCGAGCTGGACGATGATTGGGAGGG
TGTGATGGACAAGAAGAACGCCAGGGACATGCTTTTACACCAGGATAAAC
TCGCCCTCCGCAAGTACCGTGCACAGAAGTACTTCGTGGATGCGCTGACC
GGCCAAGACGTGGCGTTCTTTGAGAAGCACAAGAAGGCCATCCTGTATCG
TATCCTGCAGCGGGACGCGACGGCAGCCGAGCTCTTCGCCAAGAACAAGG
AGGAGGTGGAACGTGCTCGACGCGTCGACATGGAGGATATGGTCTCTCAG
GACTACAACGTCAGGACGGAACTGTTCAAGCTAGTCAAGGATGTTGGGTA
CGGAGGGTTCGACGACTACACCACCGAAGTGTGTCTGAAAGAAGCAGGCG
AATCTGATAAAATCAAGCTTGGTATTGGTGCCGTACAACTGGTCATCGGC
GGATCGACTAAGAAGAACACCACCCTGGCAGGCGTGCTCAAGCCTTGGCT
GCTTAAATACATGGGCCTGAAGCTGCAAGCACGTCGGGACGGAAGGGGGG
ACAAAAGGCGCAGTATGTACTCTATGAAACCCTGCCCCGACATTGAAGAG
TTTTCGCTGAGGGGGAACTCTGTGTATGACCGTGTGATGGGGCCCAACAT
CGGGAGCAAGGGGTTTGATGGAGAGTCCGTGCGTCCAGACTGCGGGGACG
GGTCGGTGGTAGATCCAACACCGGATATTCGCCAGTTCATGTTCGCAACT
GAGCGTCTTTGTTTCGATGACCCCACCGTTACCCGGGGTACTGGGGGTAA
GCGTGGAGCTTCTTGCATGTAGTTCCCAGTCTCGCCATTGTCGTTAAGTT
AGCGATTGTGTCAACTTAATT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12087:4346..5666+

>mRNA_L-elsbetiae_contig12087.1753.1 ID=mRNA_L-elsbetiae_contig12087.1753.1|Name=mRNA_L-elsbetiae_contig12087.1753.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1926bp|location=Sequence derived from alignment at L-elsbetiae_contig12087:4346..5666+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCACATAACAGCTCCCGGTATTTTAGGGGGGGATTGTAGCCTGGCCTT
TTCTCTAAGCAACGCGGAAAAGAGGAAGGCGACGAAAGCACGCGCGACGG
TGCCCGAGCCCGAGCCAGACGCGATCGTCGCGCAAGAAATCGAGGACATG
GACGACATCGACGCCACCGAGCTGGACGATGATTGGGAGGGTGTGATGGA
CAAGAAGAACGCCAGGGACATGCTTTTACACCAGGATAAACTCGCCCTCC
GCAAGTACCGTGCACAGAAGTACTTCGTGGATGCGCTGACCGGCCAAGAC
GTGGCGTTCTTTGAGAAGCACAAGAAGGCCATCCTGTATCGTATCCTGCA
GCGGGACGCGACGGCAGCCGAGCTCTTCGCCAAGAACAAGGAGGAGGTGG
AACGTGCTCGACGCGTCGACATGGAGGATATGGTCTCTCAGGACTACAAC
GTCAGGACGGAACTGTTCAAGCTAGTCAAGGATGTTGGGTACGGAGGGTT
CGACGACTACACCACCGAAGTGTGTCTGAAAGAAGCAGGCGAATCTGATA
AAATCAAGCTTGGTATTGGTGCCGTACAACTGGTCATCGGCGGATCGACT
AAGAAGAACACCACCCTGGCAGGCGTGCTCAAGCCTTGGCTGCTTAAATA
CATGGGCCTGAAGCTGCAAGCACGTCGGGACGGAAGGGGGGACAAAAGGC
GCAGTATGTACTCTATGAAACCCTGCCCCGACATTGAAGAGTTTTCGCTG
AGGGGGAACTCTGTGTATGACCGTGTGATGGGGCCCAACATCGGGAGCAA
GGGGTTTGATGGAGAGTCCGTGCGTCCAGACTGCGGGGACGGGTCGGTGG
TAGATCCAACACCGGATATTCGCCAGTTCATGTTCGCAACTGAGCGTCTT
TGTTTCGATGACCCCACCGTTACCCGGGGTACTGGGGGTAAGCGTGGAGC
TTCTTGCATGTAGATGCACATAACAGCTCCCGGTATTTTAGGGGGGGATT
GTAGCCTGGCCTTTTCTCTAAGCAACGCGGAAAAGAGGAAGGCGACGAAA
GCACGCGCGACGGTGCCCGAGCCCGAGCCAGACGCGATCGTCGCGCAAGA
AATCGAGGACATGGACGACATCGACGCCACCGAGCTGGACGATGATTGGG
AGGGTGTGATGGACAAGAAGAACGCCAGGGACATGCTTTTACACCAGGAT
AAACTCGCCCTCCGCAAGTACCGTGCACAGAAGTACTTCGTGGATGCGCT
GACCGGCCAAGACGTGGCGTTCTTTGAGAAGCACAAGAAGGCCATCCTGT
ATCGTATCCTGCAGCGGGACGCGACGGCAGCCGAGCTCTTCGCCAAGAAC
AAGGAGGAGGTGGAACGTGCTCGACGCGTCGACATGGAGGATATGGTCTC
TCAGGACTACAACGTCAGGACGGAACTGTTCAAGCTAGTCAAGGATGTTG
GGTACGGAGGGTTCGACGACTACACCACCGAAGTGTGTCTGAAAGAAGCA
GGCGAATCTGATAAAATCAAGCTTGGTATTGGTGCCGTACAACTGGTCAT
CGGCGGATCGACTAAGAAGAACACCACCCTGGCAGGCGTGCTCAAGCCTT
GGCTGCTTAAATACATGGGCCTGAAGCTGCAAGCACGTCGGGACGGAAGG
GGGGACAAAAGGCGCAGTATGTACTCTATGAAACCCTGCCCCGACATTGA
AGAGTTTTCGCTGAGGGGGAACTCTGTGTATGACCGTGTGATGGGGCCCA
ACATCGGGAGCAAGGGGTTTGATGGAGAGTCCGTGCGTCCAGACTGCGGG
GACGGGTCGGTGGTAGATCCAACACCGGATATTCGCCAGTTCATGTTCGC
AACTGAGCGTCTTTGTTTCGATGACCCCACCGTTACCCGGGGTACTGGGG
GTAAGCGTGGAGCTTCTTGCATGTAG
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