mRNA_L-elsbetiae_contig12087.1752.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12087.1752.1
Unique NamemRNA_L-elsbetiae_contig12087.1752.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig12087.1752.1 vs. uniprot
Match: A0A835YQ85_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ85_9STRA)

HSP 1 Score: 119 bits (298), Expect = 1.110e-26
Identity = 71/181 (39.23%), Postives = 102/181 (56.35%), Query Frame = 1 
Query:  505 HTIEGQLRRKKQEHRLNKLLKEWGYTVDCETTINAKAGQCLTDTQRHFSRLDFRVVECVNAICIVECDEDQHYWYNLSCEMSRMADVRAALALAGYTLPIYWIRYAPTGKYCVEGKQVKIPRKQREVALKEHLAKVCSPDFTPTKQVYVHYMYYSLVNSTQGPEILLDPDFPDAMKAVVSS 1047
            H+ EG  R+ KQ+ R+ K+LKE GYTVD E TI      C+ D  RH +RLD  VV   + I IVE DE+ H  Y +SCE++RM  +  A+   GYT+P+ ++RY+P G    +G   ++ RK+REVAL E L +V +      + + + Y+ Y   N    P +  DP F + M   V S
Sbjct:  242 HSKEGAKRQLKQQMRVVKVLKEAGYTVDEECTIQYTG--CVPDPDRHHARLDVYVVTITSCILIVEVDEEAHASYLVSCEITRMLQMHEAILTRGYTVPVVFVRYSPNGAITRDGVYFEMTRKEREVALLEFLGRVRAGQQVFEEPLNLVYLCYPTANGL--PTVCEDPHFDEGMIGTVRS 418
[Close]
BLAST of mRNA_L-elsbetiae_contig12087.1752.1 vs. uniprot
Match: A0A835Z303_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z303_9STRA)

HSP 1 Score: 116 bits (291), Expect = 2.700e-25
Identity = 71/176 (40.34%), Postives = 101/176 (57.39%), Query Frame = 1 
Query:  505 HTIEGQLRRKKQEHRLNKLLKEWGYTVDCETTINAKAGQCLTDTQRHFSRLDFRVVECVNAICIVECDEDQHYWYNLSCEMSRMADVRAALALAGYTLPIYWIRYAPTGKYCVEGKQVKIPRKQREVALKEHLAKVCSPDFTPTKQVYVHYMYYSLVNSTQG-PEILLDPDFPDAM 1029
            HT EG  R+ KQ+ R+  LLKE GYTVD E TI  + G C+ D  RH +RLD  +V   + I IVE DE+ H  Y +SCE++RM  V  A+   GYT+P+ ++RY P G    +G  +K+ R++REV L E L +V        + + + Y+ Y    +T G P +  D DF + M
Sbjct:  342 HTKEGAKRQLKQQMRVANLLKEAGYTVDEECTI--QYGGCVPDPDRHRARLDIYIVTITSCILIVEVDEEAHASYLVSCELTRMLQVHEAILSRGYTVPVVFVRYNPNGCITKDGVCIKMTREEREVVLLEFLGRVRDGQQVFQEPLNLVYLCYP---TTYGLPTVCEDTDFDEGM 512
[Close]
BLAST of mRNA_L-elsbetiae_contig12087.1752.1 vs. uniprot
Match: A0A835Z3M2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3M2_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 4.300e-16
Identity = 59/195 (30.26%), Postives = 100/195 (51.28%), Query Frame = 1 
Query:  505 HTIEGQLRRKKQEHRLNKLLKEWGYTVDCETTINAKAGQCLTDTQRHFSRLDFRVVECVNAICIVECDEDQHYWYNLSCEMSRMADVRAALALAGYTL----------------PIYWIRYAPTGKYCVEGKQVKIPRKQREVALKEHLAKVCSPDFTPTKQVYVHYMYYSLVNSTQGPEILLDPDFPDAMKAVV 1041
            HT+EGQ ++ +++ R+ ++L E  YTVD E  +  + G C+ D  +  +R+D+ V+   NAI IVECDE  H  Y L+CE+SRM  +  A+  A +++                P+ ++R+ P   + V+G++    R  RE  L E L  +          + + Y+ YS+++    P +  DPDF   M+  V
Sbjct:  226 HTVEGQQKKIRKQDRVRQVL-ESAYTVDSECHVRYQGG-CVPDPDKFCARIDYHVLGITNAIVIVECDEQGHKDYTLTCELSRMEQIHEAIIKANFSMVVAKAGEAYALTASMKPVVFVRFNPD-PWKVDGEKELSRRCDREAVLLEVLQDISDGTLELPHPLNLVYIGYSMLDGE--PVVCGDPDFAPQMRGCV 415
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12087.1752.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835YQ85_9STRA1.110e-2639.23Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z303_9STRA2.700e-2540.34Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z3M2_9STRA4.300e-1630.26Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12087contigL-elsbetiae_contig12087:859..1908 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1050
Cds size1050
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815407.9592319-CDS-L-elsbetiae_contig12087:858..19081622815407.9592319-CDS-L-elsbetiae_contig12087:858..1908Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12087 859..1908 +
1691682884.3314676-CDS-L-elsbetiae_contig12087:858..19081691682884.3314676-CDS-L-elsbetiae_contig12087:858..1908Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12087 859..1908 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12087.1752.1prot_L-elsbetiae_contig12087.1752.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12087 859..1908 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12087.1752.1

>prot_L-elsbetiae_contig12087.1752.1 ID=prot_L-elsbetiae_contig12087.1752.1|Name=mRNA_L-elsbetiae_contig12087.1752.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=350bp
MQLHELRHQGIRPYSCYLDGCPYKAYTAGALKVHEMTHSGEKTHVCDIGQ
CRDAFTQPSTLRRHKKTLHPGGVRVFETPTKIIRPLLACDVDGCPYTTRR
PDQMDLHEKRHRGEKTFSCGTCPYRAFTKYELTVHQRTHSHEKPFVCDFE
GCGHAYSQSGNVIIHKKTHTIEGQLRRKKQEHRLNKLLKEWGYTVDCETT
INAKAGQCLTDTQRHFSRLDFRVVECVNAICIVECDEDQHYWYNLSCEMS
RMADVRAALALAGYTLPIYWIRYAPTGKYCVEGKQVKIPRKQREVALKEH
LAKVCSPDFTPTKQVYVHYMYYSLVNSTQGPEILLDPDFPDAMKAVVSS*
back to top

mRNA from alignment at L-elsbetiae_contig12087:859..1908+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12087.1752.1 ID=mRNA_L-elsbetiae_contig12087.1752.1|Name=mRNA_L-elsbetiae_contig12087.1752.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1050bp|location=Sequence derived from alignment at L-elsbetiae_contig12087:859..1908+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCAGCTACACGAGCTACGGCACCAAGGCATACGCCCATACTCGTGCTA
CTTGGACGGCTGCCCGTACAAAGCCTACACAGCTGGTGCTTTGAAAGTAC
ATGAGATGACACACAGTGGTGAAAAAACTCACGTGTGTGACATCGGGCAG
TGCAGGGACGCATTCACTCAGCCGAGTACTCTCAGACGGCACAAGAAGAC
CCTACACCCAGGTGGTGTCCGTGTATTCGAGACCCCCACCAAAATAATAC
GACCACTACTTGCGTGTGACGTAGATGGATGCCCTTACACAACTCGGCGT
CCTGACCAAATGGATCTACATGAGAAAAGGCACCGAGGGGAAAAAACGTT
TTCATGTGGTACGTGCCCGTACAGGGCTTTCACGAAATACGAATTGACTG
TACATCAGAGGACGCATTCGCATGAAAAGCCTTTTGTATGTGACTTCGAG
GGCTGCGGGCACGCTTACTCGCAGTCCGGAAATGTCATCATACACAAAAA
GACCCACACCATCGAGGGTCAGCTTCGTCGCAAGAAGCAAGAGCACCGTC
TGAACAAGCTACTCAAGGAGTGGGGCTACACGGTCGACTGCGAGACCACC
ATCAACGCCAAAGCTGGCCAGTGCTTGACGGACACCCAGCGCCACTTCTC
GAGACTAGATTTTCGGGTCGTAGAGTGCGTCAACGCTATATGCATCGTAG
AGTGTGACGAGGACCAGCACTACTGGTACAATCTATCGTGTGAAATGAGC
CGTATGGCAGACGTTCGTGCGGCGCTGGCTCTGGCTGGGTACACACTGCC
CATCTACTGGATTCGCTACGCCCCCACGGGCAAGTATTGCGTGGAAGGGA
AACAGGTCAAGATTCCGCGAAAGCAACGCGAGGTAGCGCTGAAAGAACAC
CTCGCCAAAGTCTGTTCTCCCGACTTTACGCCCACCAAACAAGTGTATGT
GCATTACATGTATTATAGCTTGGTTAATTCAACCCAGGGCCCCGAGATAC
TGCTTGACCCGGACTTTCCGGATGCTATGAAGGCTGTGGTGTCGTCGTAG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig12087:859..1908+

>mRNA_L-elsbetiae_contig12087.1752.1 ID=mRNA_L-elsbetiae_contig12087.1752.1|Name=mRNA_L-elsbetiae_contig12087.1752.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2100bp|location=Sequence derived from alignment at L-elsbetiae_contig12087:859..1908+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCAGCTACACGAGCTACGGCACCAAGGCATACGCCCATACTCGTGCTA
CTTGGACGGCTGCCCGTACAAAGCCTACACAGCTGGTGCTTTGAAAGTAC
ATGAGATGACACACAGTGGTGAAAAAACTCACGTGTGTGACATCGGGCAG
TGCAGGGACGCATTCACTCAGCCGAGTACTCTCAGACGGCACAAGAAGAC
CCTACACCCAGGTGGTGTCCGTGTATTCGAGACCCCCACCAAAATAATAC
GACCACTACTTGCGTGTGACGTAGATGGATGCCCTTACACAACTCGGCGT
CCTGACCAAATGGATCTACATGAGAAAAGGCACCGAGGGGAAAAAACGTT
TTCATGTGGTACGTGCCCGTACAGGGCTTTCACGAAATACGAATTGACTG
TACATCAGAGGACGCATTCGCATGAAAAGCCTTTTGTATGTGACTTCGAG
GGCTGCGGGCACGCTTACTCGCAGTCCGGAAATGTCATCATACACAAAAA
GACCCACACCATCGAGGGTCAGCTTCGTCGCAAGAAGCAAGAGCACCGTC
TGAACAAGCTACTCAAGGAGTGGGGCTACACGGTCGACTGCGAGACCACC
ATCAACGCCAAAGCTGGCCAGTGCTTGACGGACACCCAGCGCCACTTCTC
GAGACTAGATTTTCGGGTCGTAGAGTGCGTCAACGCTATATGCATCGTAG
AGTGTGACGAGGACCAGCACTACTGGTACAATCTATCGTGTGAAATGAGC
CGTATGGCAGACGTTCGTGCGGCGCTGGCTCTGGCTGGGTACACACTGCC
CATCTACTGGATTCGCTACGCCCCCACGGGCAAGTATTGCGTGGAAGGGA
AACAGGTCAAGATTCCGCGAAAGCAACGCGAGGTAGCGCTGAAAGAACAC
CTCGCCAAAGTCTGTTCTCCCGACTTTACGCCCACCAAACAAGTGTATGT
GCATTACATGTATTATAGCTTGGTTAATTCAACCCAGGGCCCCGAGATAC
TGCTTGACCCGGACTTTCCGGATGCTATGAAGGCTGTGGTGTCGTCGTAG
ATGCAGCTACACGAGCTACGGCACCAAGGCATACGCCCATACTCGTGCTA
CTTGGACGGCTGCCCGTACAAAGCCTACACAGCTGGTGCTTTGAAAGTAC
ATGAGATGACACACAGTGGTGAAAAAACTCACGTGTGTGACATCGGGCAG
TGCAGGGACGCATTCACTCAGCCGAGTACTCTCAGACGGCACAAGAAGAC
CCTACACCCAGGTGGTGTCCGTGTATTCGAGACCCCCACCAAAATAATAC
GACCACTACTTGCGTGTGACGTAGATGGATGCCCTTACACAACTCGGCGT
CCTGACCAAATGGATCTACATGAGAAAAGGCACCGAGGGGAAAAAACGTT
TTCATGTGGTACGTGCCCGTACAGGGCTTTCACGAAATACGAATTGACTG
TACATCAGAGGACGCATTCGCATGAAAAGCCTTTTGTATGTGACTTCGAG
GGCTGCGGGCACGCTTACTCGCAGTCCGGAAATGTCATCATACACAAAAA
GACCCACACCATCGAGGGTCAGCTTCGTCGCAAGAAGCAAGAGCACCGTC
TGAACAAGCTACTCAAGGAGTGGGGCTACACGGTCGACTGCGAGACCACC
ATCAACGCCAAAGCTGGCCAGTGCTTGACGGACACCCAGCGCCACTTCTC
GAGACTAGATTTTCGGGTCGTAGAGTGCGTCAACGCTATATGCATCGTAG
AGTGTGACGAGGACCAGCACTACTGGTACAATCTATCGTGTGAAATGAGC
CGTATGGCAGACGTTCGTGCGGCGCTGGCTCTGGCTGGGTACACACTGCC
CATCTACTGGATTCGCTACGCCCCCACGGGCAAGTATTGCGTGGAAGGGA
AACAGGTCAAGATTCCGCGAAAGCAACGCGAGGTAGCGCTGAAAGAACAC
CTCGCCAAAGTCTGTTCTCCCGACTTTACGCCCACCAAACAAGTGTATGT
GCATTACATGTATTATAGCTTGGTTAATTCAACCCAGGGCCCCGAGATAC
TGCTTGACCCGGACTTTCCGGATGCTATGAAGGCTGTGGTGTCGTCGTAG
back to top