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Homology
BLAST of mRNA_L-elsbetiae_contig12085.1751.1 vs. uniprot
Match: A0A6H5JZ55_9PHAE (C2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ55_9PHAE) HSP 1 Score: 298 bits (763), Expect = 7.420e-93 Identity = 173/295 (58.64%), Postives = 202/295 (68.47%), Query Frame = 1
Query: 334 LGGGFVHGPG------HSAPXXXXXXGHAIAPWLGALAVGAVAATAMTPYAGRDRGRPGVVVWREGGQEMSAEVNMLTVRVCRAQKLKKVQIIGKQDPYVRAKLLYNGHKIGECRSSTHTDGGKNPTWENTGRSVFTFYVPSTVTLDSLSLVLDVVNDNLVSDAFIGTTGSIALDRAATGDAKWWNVTTGGTLQAAIELVTADSHRATAAAAPPQPRQPGYSPTRSAAXXXXXXPTYTGGXXXSDYGGNGSAGANPSPHVPVAHATP-----SGNLFGGAAVAAPTDA-PPPPYE 1182
LGG H PG P G APWLGALAVGAVAA+ ++PY D GR G+VVWREG QEMSA VNM+TVRVC+AQ LKKVQ+IGKQDPYVRAKLL+NGHKIGECRSSTHTDGG+NPTW+N +SVFTFYVP+TVTLD+L++VLDVVNDNLV+D+ IGTTGSI L AATG++KWWN+++GGT+QA IEL+T +S P YS +AA + G YGG A NP PHV VAHATP GN +GGAA A + PPP YE
Sbjct: 112 LGGPGQHHPGGFSXXXXXGPGGLVGMGPVFAPWLGALAVGAVAASVVSPYTSYDGGRNGMVVWREGQQEMSAPVNMVTVRVCQAQNLKKVQMIGKQDPYVRAKLLFNGHKIGECRSSTHTDGGRNPTWQNMAKSVFTFYVPATVTLDTLAVVLDVVNDNLVADSIIGTTGSIGLQTAATGESKWWNISSGGTIQAIIELITPESGGGGGTGTHPNTA---YSRNSAAAADPAVASSRPSG---GSYGGGRVATVNPPPHVAVAHATPVAAGAPGNAYGGAAPGAMAMSNPPPSYE 400
BLAST of mRNA_L-elsbetiae_contig12085.1751.1 vs. uniprot
Match: D8LMN7_ECTSI (C2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMN7_ECTSI) HSP 1 Score: 292 bits (747), Expect = 2.110e-91 Identity = 168/265 (63.40%), Postives = 195/265 (73.58%), Query Frame = 1
Query: 406 APWLGALAVGAVAATAMTPYAGRDRGRPGVVVWREGGQEMSAEVNMLTVRVCRAQKLKKVQIIGKQDPYVRAKLLYNGHKIGECRSSTHTDGGKNPTWENTGRSVFTFYVPSTVTLDSLSLVLDVVNDNLVSDAFIGTTGSIALDRAATGDAKWWNVTTGGTLQAAIELVTADSHRATAAAAPPQPRQPGYSPTRSAAXXXXXXPTYTGGXXXSDYGGNGSAGANPSPHVPVAHATP-----SGNLFGGAA-VAAPTDAPPPPYE 1182
APWLGALAVGAVAA+ ++PY D GR G+VVWREG QEMSA VNM+TVRVC+AQ LKKVQ+IGKQDPYVRAKLL+NGHKIGECRSSTHTDGG+NPTW+N RSVFTFYVP+TVTL++L++VLDVVNDNLV+D+ IGTTGSI L AATG++KWWNV++GGTLQA IEL+T +S P + +RS XXXX + Y G A NPSPHV VAHATP GN +GGA VA PPP YE
Sbjct: 124 APWLGALAVGAVAASVVSPYTSYDGGRNGMVVWREGQQEMSAPVNMVTVRVCQAQNLKKVQMIGKQDPYVRAKLLFNGHKIGECRSSTHTDGGRNPTWQNMARSVFTFYVPATVTLETLAVVLDVVNDNLVADSIIGTTGSIGLKTAATGESKWWNVSSGGTLQAIIELITPES-----GGXXXXXTHPNIAYSRSXXXXXXPA-VASSRPSGGSYNGGRVATVNPSPHVAVAHATPVAAGAPGNAYGGATPVATAMSDPPPSYE 382
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Exons | 4 |
Model size | 1184 |
Cds size | 1182 |
Stop | 0 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622815407.8940792-CDS-L-elsbetiae_contig12085:1282..1831 | 1622815407.8940792-CDS-L-elsbetiae_contig12085:1282..1831 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig12085 1283..1831 + |
1691682884.2843697-CDS-L-elsbetiae_contig12085:1282..1831 | 1691682884.2843697-CDS-L-elsbetiae_contig12085:1282..1831 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig12085 1283..1831 + |
1622815407.9040165-CDS-L-elsbetiae_contig12085:3421..3517 | 1622815407.9040165-CDS-L-elsbetiae_contig12085:3421..3517 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig12085 3422..3517 + |
1691682884.29626-CDS-L-elsbetiae_contig12085:3421..3517 | 1691682884.29626-CDS-L-elsbetiae_contig12085:3421..3517 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig12085 3422..3517 + |
1622815407.9155617-CDS-L-elsbetiae_contig12085:4094..4292 | 1622815407.9155617-CDS-L-elsbetiae_contig12085:4094..4292 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig12085 4095..4292 + |
1691682884.309577-CDS-L-elsbetiae_contig12085:4094..4292 | 1691682884.309577-CDS-L-elsbetiae_contig12085:4094..4292 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig12085 4095..4292 + |
1622815407.9287212-CDS-L-elsbetiae_contig12085:4973..5312 | 1622815407.9287212-CDS-L-elsbetiae_contig12085:4973..5312 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig12085 4974..5312 + |
1691682884.3210664-CDS-L-elsbetiae_contig12085:4973..5312 | 1691682884.3210664-CDS-L-elsbetiae_contig12085:4973..5312 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig12085 4974..5312 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig12085.1751.1 >prot_L-elsbetiae_contig12085.1751.1 ID=prot_L-elsbetiae_contig12085.1751.1|Name=mRNA_L-elsbetiae_contig12085.1751.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=394bp
MGDDGGGGGGGGGDGGGFGDGGGGGGGGGGHHHGGGGFGGGHHGGGFGDG GHHHGFGGGHHHGFGGGHGFGGPVGYRGGAFGFGFGGPGPGFPPHHYHHH PGGPGGFPGGPLGGGFVHGPGHSAPGGYVGGGHAIAPWLGALAVGAVAAT AMTPYAGRDRGRPGVVVWREGGQEMSAEVNMLTVRVCRAQKLKKVQIIGK QDPYVRAKLLYNGHKIGECRSSTHTDGGKNPTWENTGRSVFTFYVPSTVT LDSLSLVLDVVNDNLVSDAFIGTTGSIALDRAATGDAKWWNVTTGGTLQA AIELVTADSHRATAAAAPPQPRQPGYSPTRSAAAAPAQPPTYTGGGGGSD YGGNGSAGANPSPHVPVAHATPSGNLFGGAAVAAPTDAPPPPYE back to topmRNA from alignment at L-elsbetiae_contig12085:1283..5312+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig12085.1751.1 ID=mRNA_L-elsbetiae_contig12085.1751.1|Name=mRNA_L-elsbetiae_contig12085.1751.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4030bp|location=Sequence derived from alignment at L-elsbetiae_contig12085:1283..5312+ (Laminarionema elsbetiae ELsaHSoW15) ATGGGCGACGATGGTGGGGGTGGCGGTGGCGGCGGAGGCGATGGCGGCGG
CTTTGGTGATGGTGGTGGAGGCGGCGGCGGCGGCGGCGGCCACCACCACG
GCGGTGGTGGTTTCGGCGGGGGGCACCACGGAGGCGGCTTTGGTGATGGG
GGGCACCACCACGGGTTCGGAGGCGGGCACCACCACGGGTTCGGAGGCGG
GCACGGATTCGGAGGCCCGGTAGGATACCGAGGCGGCGCGTTTGGCTTCG
GGTTTGGCGGCCCCGGACCAGGCTTCCCCCCCCACCACTATCACCACCAT
CCAGGGGGTCCCGGAGGATTCCCAGGAGGCCCACTCGGCGGCGGGTTCGT
CCACGGGCCGGGCCACTCCGCTCCCGGGGGGTATGTCGGAGGGGGCCACG
CGATTGCGCCTTGGCTCGGGGCGCTGGCGGTGGGGGCTGTCGCGGCGACG
GCGATGACCCCTTACGCCGGGCGGGATAGGGGCAGGCCGGGCGTCGTGGT
GTGGCGGGAGGGCGGGCAAGAGATGTCTGCCGAGGTCAACATGTTGACGG
TGAGGACGGGGGAAAGGAGAGGGACTGCCGCGCATAGTTTCTACACCCTA
TCCGCCCCTCTCTCGGCTTGCATGGTGCTTGTAGTCTTGTCGTAGGTACG
AGCTAGGCTGGCCGTCAAAATGATCTGAGAGGCGGCATCGATTTCCCGTG
CGATTTTTGCGAATTATGAGCTGTAATTTTGACACGCGATTTGGAGTGCT
ATGGCCCAGAGGATCAAAGAAGAGAAGATTGATTTTTGTTTTTTTTTAAC
GACTTATCCGCAATTTGAGCAAAAGTGGGACAATACTTTTGGCAACAACT
GACAGGATATAATAAAAAATCAAACTTCTTTGGGCGCCTCGGCTAAAGCG
CTCCGAATCATGTGTTAAAGTACAGACCGTGATTCCAAAAAACCGCATGG
GAAATCGAGAAATTGTTTTCGCGCCTCAACCCAGGTTCAGGGGCAGACGG
AATCGTAAAGAAAAAAGGCCGCTAGAGACAGAAAATCGATGGTACTCAGC
GAACATCGAAACGAGCGGCGCCGGCGATAGTATCGACGAAAGGGTGTACG
GACATGTCGATGCTGGGCATGCTACCTACTACCTTGTGTGTGCGCGCGCG
TGTAAGGGTGCGTTTTCGTGATATCGAAAAAAAGGAAAAATCCCGCCGCG
CTTGTAAAAAACCGCAATCACGCCGCATTTCACGGGACTGTACCACAAAA
ATAATACCATATTCCGGAGAAACGTGCGGGATCAACCATCAGCTGGGACG
TGCATGGCCGCGAAGATCCGCTGACTATGATAGATGCCCTGTATTCGCTA
TGCTTCTTTGTGGTTGGTGAGTTAACAGCTGCCGAACTAAAGTGAGCTTT
ACAGCCAGCCCAGCTTGTAGCTCACATCTAGATACAAATTTGTGCTCTGC
CATGATTCCCCTCGAAAGTTTTGGCGGAAGCCCCGTGTGCAAATAAGGGC
GTGTCTAGCTGGGGGAATGGGCTGTGGAGTACGACCGGCTCTTCAACTTG
GTAAATGCTGCTGGCCTGTTTAACCAGTTCGCCCCGTTGACCTAGGAGAG
CAGCAATGGAGCGCCCCACCTCCCGGCCGGCCAACCCCGCCAATGCGGCA
AACATACATGCCCTGCTCGCGATAAAAACATCACAGGCAGGCACCGCAGG
AGCCCCCTCCTGTGTGACCCCCCGTTGGGTCGTCTAGCTAGCCAGCGTCT
CACCACGATCCTAACTCCGGACCGCAAATTCCGGACCTGCGTGCGGTGAT
TTGCAGCATGGGCATTCGTGGCAACTGCTGCGGTGGTGGCTCCTCCCGAT
GTTGGTTCTGTCTTGTTTTTCAGGCCCGGTCTTATCGGACACGGACAACA
CGACGACGAGGCTGCACCCTCGTTTTTTTCTCGATGTTGTTCACGACGCC
GCCCGCCATCGCCTGATCGGCCGCAACCCCGGCCTGCGCTTCCTTCATGC
CGGCTGGCGCAGCGGTGCGAACCGTGCCGCCGTCGATCACGACCGTGTGT
CTACCGATGCATGTACGTGGCAAACATGCGGCGCCTGCCTTCCTCCCCGC
GACGTTACTTCCTCTCGTCTCTCTTCCTCCTTTTCTCAGGTCCGCGTCTG
CCGTGCGCAGAAGCTCAAGAAGGTCCAGATCATTGGGAAGCAGGACCCTT
ACGTGCGAGCAAAGCTCCTCTATAACGGGCACAAGGTGGGGCGATCGGTA
GGCACGGGGCCCCGGTAGGATACTCCTGCGTGGTTCGCCTATTTTTGCTG
TTGTTTGTTGTTGTTAGTTTCACAACCACGCGCGTATTTATGGACGTACG
TATGTATCTCTTTTCGAGACCGAGGCGCATCCCCCACCCCCCACCCCGCG
CCCCCGCACCCCCGCACCCCGGCCATGGTCCTAGTAGAGGCGCCGACAAT
GTTTTGGACCTCGTATTTGGGCGTGGTGCACTCGCTGTCGCGCGTGATAG
TAACCACCAGCCCCCCAGGCCCTCGTAGCCGAGCGATTCCCCTCCCCGGT
CTGCACATTGAAACTGACCGAGGTTGAAAGTTGAGGCGTTTCTACTGCCG
CGGGTACTGGTATTGCCAACGCTTTCATCAAACCGGCGGGTGACGCACCC
ATCACCATATTCCCCAGCGATTGCATGGCTCTGACCACCAACGCAACCAG
TGCCAAGACCACAGAGGGGAGCACTGCTTGCTGTTTCACGCTGTTATTTT
GCCGTTTTTGTTCCGTTTGGCAATCGATCGCCATGCGACGTTTGTTTGCA
TCATCGGTAAAGATCGGCGAGTGTCGAAGCTCGACGCACACGGACGGGGG
CAAGAATCCCACCTGGGAGAACACGGGCAGGAGCGTTTTCACCTTCTACG
TCCCCTCGACGGTGACGCTCGATTCCCTCTCCCTCGTGCTCGACGTGGTC
AATGACAATCTTGTTTCGGACGCCTTCATCGGTACTACCGGCAGCATCGC
TCTTGACCGGGTGCGTTGGGGTTTGCTGTGTTGTTGTTGTTGTTGTTGTT
GTTGTTGTTGTGTTGGTGTTGTTGTTGTTGGTGGTGGTGTTTTTCTCGTT
GCCGTCGTCTTTGGGAGTTCTTGAACGTGCTTAACCTTTCCTCTTTCGAT
CCAGCACAAAGTGGACACACCACGCCACCGGTGTTTGCATGAGGTCTCGC
ATTGTATGAACGATGCACGCGCGTGGGACAGCCGCAGCAGTGCATCCAAG
CCCAGACGGAACCGATCACCACCAAGTCAGTTACCCCCGCGCGTGGTGAA
AGCACAGGACTCGATATTTTGCAGCTCTCCGCCACCTCCGCCGCGACTCC
TCCCGTGGCCCGTCTCATCGAAAAAGTTAACTTGTAGGTACTGAATTTGT
TCTCAAGAAAAAAGGCGAAAACGAAGAGAGTATCCCCCCCCTCCCCCACT
CCTGTTTACCGGTCCGTGGAAGGCGAGAAAGGGGTGCAACAGGAGGGGGC
AGGCGGAAGATATTGGTGCCGAGTATCGGCCGAGGAGCCGAGACATGGGG
AGAAAAAAAAAGTCATAATAGATACATGCGCTCAGAAGAAGTACGTGCAC
CTCACTCACACCATATTCGTGCCTTCCCTGCTCGATGTGCACTATGCCGT
CCTACCTCTCGCCCCGCGCGCCTTTACCCCGGGCTGAACAGGCGGCAACG
GGCGACGCCAAGTGGTGGAACGTGACTACGGGGGGCACGCTCCAGGCGGC
CATCGAGCTCGTCACGGCCGACTCCCACCGCGCTACTGCCGCCGCCGCAC
CACCACAGCCACGCCAACCCGGGTACAGCCCCACCCGCAGCGCGGCTGCT
GCGCCGGCACAGCCACCAACCTACACGGGCGGCGGCGGCGGCAGCGATTA
CGGCGGGAATGGAAGCGCCGGGGCCAATCCGTCGCCTCACGTCCCCGTCG
CTCACGCCACCCCGTCGGGCAACTTGTTCGGGGGTGCGGCGGTTGCGGCG
CCAACGGATGCCCCCCCCCCACCGTACGAG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig12085:1283..5312+ >mRNA_L-elsbetiae_contig12085.1751.1 ID=mRNA_L-elsbetiae_contig12085.1751.1|Name=mRNA_L-elsbetiae_contig12085.1751.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2364bp|location=Sequence derived from alignment at L-elsbetiae_contig12085:1283..5312+ (Laminarionema elsbetiae ELsaHSoW15) ATGGGCGACGATGGTGGGGGTGGCGGTGGCGGCGGAGGCGATGGCGGCGG CTTTGGTGATGGTGGTGGAGGCGGCGGCGGCGGCGGCGGCCACCACCACG GCGGTGGTGGTTTCGGCGGGGGGCACCACGGAGGCGGCTTTGGTGATGGG GGGCACCACCACGGGTTCGGAGGCGGGCACCACCACGGGTTCGGAGGCGG GCACGGATTCGGAGGCCCGGTAGGATACCGAGGCGGCGCGTTTGGCTTCG GGTTTGGCGGCCCCGGACCAGGCTTCCCCCCCCACCACTATCACCACCAT CCAGGGGGTCCCGGAGGATTCCCAGGAGGCCCACTCGGCGGCGGGTTCGT CCACGGGCCGGGCCACTCCGCTCCCGGGGGGTATGTCGGAGGGGGCCACG CGATTGCGCCTTGGCTCGGGGCGCTGGCGGTGGGGGCTGTCGCGGCGACG GCGATGACCCCTTACGCCGGGCGGGATAGGGGCAGGCCGGGCGTCGTGGT GTGGCGGGAGGGCGGGCAAGAGATGTCTGCCGAGGTCAACATGTTGACGA TGGGCGACGATGGTGGGGGTGGCGGTGGCGGCGGAGGCGATGGCGGCGGC TTTGGTGATGGTGGTGGAGGCGGCGGCGGCGGCGGCGGCCACCACCACGG CGGTGGTGGTTTCGGCGGGGGGCACCACGGAGGCGGCTTTGGTGATGGGG GGCACCACCACGGGTTCGGAGGCGGGCACCACCACGGGTTCGGAGGCGGG CACGGATTCGGAGGCCCGGTAGGATACCGAGGCGGCGCGTTTGGCTTCGG GTTTGGCGGCCCCGGACCAGGCTTCCCCCCCCACCACTATCACCACCATC CAGGGGGTCCCGGAGGATTCCCAGGAGGCCCACTCGGCGGCGGGTTCGTC CACGGGCCGGGCCACTCCGCTCCCGGGGGGTATGTCGGAGGGGGCCACGC GATTGCGCCTTGGCTCGGGGCGCTGGCGGTGGGGGCTGTCGCGGCGACGG CGATGACCCCTTACGCCGGGCGGGATAGGGGCAGGCCGGGCGTCGTGGTG TGGCGGGAGGGCGGGCAAGAGATGTCTGCCGAGGTCAACATGTTGACGGT CCGCGTCTGCCGTGCGCAGAAGCTCAAGAAGGTCCAGATCATTGGGAAGC AGGACCCTTACGTGCGAGCAAAGCTCCTCTATAACGGGCACAAGGTCCGC GTCTGCCGTGCGCAGAAGCTCAAGAAGGTCCAGATCATTGGGAAGCAGGA CCCTTACGTGCGAGCAAAGCTCCTCTATAACGGGCACAAGATCGGCGAGT GTCGAAGCTCGACGCACACGGACGGGGGCAAGAATCCCACCTGGGAGAAC ACGGGCAGGAGCGTTTTCACCTTCTACGTCCCCTCGACGGTGACGCTCGA TTCCCTCTCCCTCGTGCTCGACGTGGTCAATGACAATCTTGTTTCGGACG CCTTCATCGGTACTACCGGCAGCATCGCTCTTGACCGGATCGGCGAGTGT CGAAGCTCGACGCACACGGACGGGGGCAAGAATCCCACCTGGGAGAACAC GGGCAGGAGCGTTTTCACCTTCTACGTCCCCTCGACGGTGACGCTCGATT CCCTCTCCCTCGTGCTCGACGTGGTCAATGACAATCTTGTTTCGGACGCC TTCATCGGTACTACCGGCAGCATCGCTCTTGACCGGGCGGCAACGGGCGA CGCCAAGTGGTGGAACGTGACTACGGGGGGCACGCTCCAGGCGGCCATCG AGCTCGTCACGGCCGACTCCCACCGCGCTACTGCCGCCGCCGCACCACCA CAGCCACGCCAACCCGGGTACAGCCCCACCCGCAGCGCGGCTGCTGCGCC GGCACAGCCACCAACCTACACGGGCGGCGGCGGCGGCAGCGATTACGGCG GGAATGGAAGCGCCGGGGCCAATCCGTCGCCTCACGTCCCCGTCGCTCAC GCCACCCCGTCGGGCAACTTGTTCGGGGGTGCGGCGGTTGCGGCGCCAAC GGATGCCCCCCCCCCACCGTACGAGGCGGCAACGGGCGACGCCAAGTGGT GGAACGTGACTACGGGGGGCACGCTCCAGGCGGCCATCGAGCTCGTCACG GCCGACTCCCACCGCGCTACTGCCGCCGCCGCACCACCACAGCCACGCCA ACCCGGGTACAGCCCCACCCGCAGCGCGGCTGCTGCGCCGGCACAGCCAC CAACCTACACGGGCGGCGGCGGCGGCAGCGATTACGGCGGGAATGGAAGC GCCGGGGCCAATCCGTCGCCTCACGTCCCCGTCGCTCACGCCACCCCGTC GGGCAACTTGTTCGGGGGTGCGGCGGTTGCGGCGCCAACGGATGCCCCCC CCCCACCGTACGAG back to top
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