mRNA_L-elsbetiae_contig1208.1750.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1208.1750.1 vs. uniprot
Match: D7FPF9_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPF9_ECTSI) HSP 1 Score: 377 bits (969), Expect = 9.710e-119 Identity = 319/657 (48.55%), Postives = 357/657 (54.34%), Query Frame = 1 Query: 7 QDKSVELRKSCDYCVRLKRACDGKNPCSLCSRRNKECTRSARKKSGPAKGTKYAPRRKRSVIAEWADHASSLGAREAGLPHEFPGGGVGGRGGSGPL-HHSLPVAPGEAAAARAAGVGYLGGGGPPPSLHSPPAQ-------RYGGEASWRDDPLASAHSRHHQGRGPAELGRQPPSLPPHSSALSFPMGWYG-GAAGHEGAEAGPGAADYRQLGHR--VEPPMGYAPTTAEALSRRQEHHAHVPRGAWSVSSLEVE----------GAGERAAAEMEPQRRRTWEPPQGGWASHSEPLVRSPQEGVGS-AHGQRVRLSPPDLPG----------------RPLMRPSADPYAPAALSPREREAAGHPAKHPRGDDPDSSLPYLSA-REPADPMAGFSFHPAANRGSSWRRAPHMAPWES--PGXXXXXXXXXXXXXXXXNDPRIQQHYAQQHLAHFDSADRPRSTXXXXXXXXXXXXXXXX---------RYREDFMREERGQERGRGGGVVEWHLPHG-------------ERPELPPPP-HGFDRRHGPAERPLAGGREARHEDGRGGGEAVVGGVAPAPPGSAPLDDRERQQMFVRGGAGGPDSPYERSAVRLGWPS---DQMDA------------QQQQRSEHGRHGWDGG 1740 +D ++ELRKSCDYCVRLKRACDGKNPCSLC+RR+K CTRSARKKSGPAKGTKYAPRRKRSVIAEWAD S GAR LPHEFPGGG RGG G L HH P+AP +AA RAAG Y G R+G EA W + R GR P E G SL P SS L FP WY G + HE E G G G R PPMGYAPTTAE LSRRQ+ H + R ++S+SSLE G A EP RRRT E P G WAS S+P +RSPQ+G + A G+RVRLSPP L R +MRP AD Y A SPR RE AG P + PR DP+SSL L REP DP AGFSFHPAANR SWRR + WES PG NDPR Y Q L F+S+DRP XXXXXXXXXXXXXXXX RYR +F RE +GRG VVEW LPHG ER ELPPPP HGFDR H P ERPL GG R +GR + ++G AP+PP R+ Q RG GG YE + R W DQ+ Q+QQR E GR W+GG Sbjct: 12 RDPTIELRKSCDYCVRLKRACDGKNPCSLCARRHKPCTRSARKKSGPAKGTKYAPRRKRSVIAEWADRTS--GARGPLLPHEFPGGGT--RGGGGQLPHHDFPLAPIDAAGMRAAGRAYYSGXXXXXXXXXXXXXXXXXXXGRFGAEALWEEGGPLPGQGR---GRRPGEEGHPSSSLSP-SSGLPFP--WYAPGPSPHEETE-GRGGERGGVGGGRGFAPPPMGYAPTTAEELSRRQQEHGYHHRASYSMSSLEXXXXXXXXXXXXGRRPGVPAAPEPYRRRTLELPPGHWASPSDPFLRSPQQGEAALAQGKRVRLSPPTLGSGAAXXXXXXXXXXXXXRSVMRPGADYYPSPATSPRAREMAGRPHERPRELDPESSLLSLPPPREPPDPTAGFSFHPAANR-PSWRRG---STWESGSPGGGGDGRPVDR------NDPRAYHQYPPQQLGSFESSDRPXXXXXXXXXXXXXXXXXXXXRGASLGDRRYR-NFDREAGEDGQGRGRSVVEWPLPHGXXXXXXXXXDPYHERVELPPPPPHGFDR-HLPLERPLMGG--GRQGEGR--HDMLLG--APSPP-------RDEQGYAARGADGG---AYEHPSGRARWAGGGGDQVGLPGRGSRDHRDYEQEQQRVERGRQDWEGG 629
BLAST of mRNA_L-elsbetiae_contig1208.1750.1 vs. uniprot
Match: A0A6H5L009_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L009_9PHAE) HSP 1 Score: 359 bits (921), Expect = 1.110e-111 Identity = 300/653 (45.94%), Postives = 336/653 (51.45%), Query Frame = 1 Query: 7 QDKSVELRKSCDYCVRLKRACDGKNPCSLCSRRNKECTRSARKKSGPAKGTKYAPRRKRSVIAEWADHASSLGAREAGLPHEFPGGGVGGRGGSGPLHHSLPVAPGEAAAARAAGVGYLGGGGPPPSLHSPPAQ-------RYGGEASWRDDPLASAHSRHHQGRGPAELGRQPPSLPPHSSALSFPMGWYGGAAGHEGAEAGPGAA----DYRQLGHRVEPPMGYAPTTAEALSRRQEHHAHVPRGAWSVSSLEVEG-----AGER--AAAEMEPQRRRTWEPPQGGWASHSEPLVRSPQEGVGS-AHGQRVRLSPPDLPG----------RPLMRPSADPYAPAALSPREREAAGHPAKHPRGDDPDSSLPYLSA-REPADPMAGFSFHPAANRGSSWRRAPHMAPWES--PGXXXXXXXXXXXXXXXXNDPRIQQHYAQQHLAHFDSADRPRSTXXXXXXXXXXXXXXXX-------------RYREDFMREERGQERGRGGGVVEWHLPHG-------------ERPELPPPPHGFDRRHGPAERPLAGGREARHEDGRGGGEAVVGGVAPAPPGSAPLDDRERQQMFVRGGAGG--PDSPYERSAVRLGWPS---DQMDA------------QQQQRSEHGRHGWDGG 1740 QD +VELRKSCDYCVRLKRACDGKNPCSLC+RR+K CTRSARKKSGPAKGTKYAPRRKRSVIAEWAD G LPHEF GGG G GG P HH +AP +AA RAA Y GGG S H R+G EA W + R GR P E G P SL P S L FP WY G G G GYAPTTAE LS + R ++S+S LE E AG R A A EP RRRT E P G WAS S+P +RSPQ+G + A G+RVRLSPP RP+MRP AD Y A SPR E AG P + PR DP+SS+ L REP DP AGFSFHPAANR SWRR + WES PG NDPR Y L F+S+DR S+ XXXXXXXXX RYR +F RE +GRG GVVEW LPHG E+ ELPPPPHGFDR H P ERPL GG G G + ++G AP+PP R++Q RGG GG YE + R W DQM Q+QQ+ E GR WDGG Sbjct: 4 QDPTVELRKSCDYCVRLKRACDGKNPCSLCARRHKPCTRSARKKSGPAKGTKYAPRRKRSVIAEWADRTGGAGGPP--LPHEFQGGGTSGGGGQLP-HHDFSLAPFDAAGMRAAERTYNSGGGL--SAHXXXXXXXXXXGGRFGAEALWEEGAPRPGQGR---GRWPGEEGH-PSSLLPSSPGLPFP--WYASRPSPHGEAEGRGGERGXXXXXXXXXXXXXXXGYAPTTAEELSXXXXXXGYHHRASYSMSFLEAEXXXXXXAGRRPGAPAMREPYRRRTPELPPGHWASPSDPFLRSPQQGEAALAQGKRVRLSPPTFGSGAAGGSGGGSRPVMRPGADYYPSPATSPRASEMAGRPHERPRELDPESSVLSLPPPREPPDPTAGFSFHPAANR-PSWRRG---STWESGSPGGGGGDGRPVDR-----NDPRAYHQYPPPQLGSFESSDRAPSSSSWSSPGXXXXXXXXXXXXGRGASLGGDRRYR-NFDREAGEDGQGRGRGVVEWPLPHGXXXXXXXXXDPYHEQVELPPPPHGFDR-HLPLERPLMGGGR----QGEGKHDMLLG--APSPP-------RDKQGYAARGGVGGGADGGAYEYPSGRPRWAGGGGDQMGLPGRGSRDHRDFEQEQQQVERGRQDWDGG 621
BLAST of mRNA_L-elsbetiae_contig1208.1750.1 vs. uniprot
Match: D8LPZ9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPZ9_ECTSI) HSP 1 Score: 88.2 bits (217), Expect = 1.530e-14 Identity = 43/58 (74.14%), Postives = 46/58 (79.31%), Query Frame = 1 Query: 10 DKSVELRKSCDYCVRLKRACDGKNPCSLCSRRNKECTRSARKKSGPAKGTKYAPRRKR 183 D V LRKSCD CVRLKRACDGKNPC LC RR + CTRS ++KSGPAKGTKY RR R Sbjct: 57 DGRVLLRKSCDLCVRLKRACDGKNPCHLCLRRRETCTRSVKRKSGPAKGTKYTTRRSR 114
BLAST of mRNA_L-elsbetiae_contig1208.1750.1 vs. uniprot
Match: A0A6H5L7F3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F3_9PHAE) HSP 1 Score: 84.3 bits (207), Expect = 1.660e-13 Identity = 45/67 (67.16%), Postives = 52/67 (77.61%), Query Frame = 1 Query: 19 VELRKSCDYCVRLKRACDGKNPCSLCSRRNKECTRSARKKSGPAKGTKYAPRRKRSVIAEWADHASS 219 V LRKSCD CVRLKRACDG++PC LC RR + CTRS ++KSGPAKGTKY RR R + A A+ ASS Sbjct: 32 VLLRKSCDLCVRLKRACDGQSPCQLCLRRRETCTRSVKRKSGPAKGTKYTTRRVR-MEAGIAEPASS 97
BLAST of mRNA_L-elsbetiae_contig1208.1750.1 vs. uniprot
Match: D8LKM5_ECTSI (Zinc finger transcriptional regulator n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKM5_ECTSI) HSP 1 Score: 82.8 bits (203), Expect = 3.820e-13 Identity = 37/55 (67.27%), Postives = 44/55 (80.00%), Query Frame = 1 Query: 25 LRKSCDYCVRLKRACDGKNPCSLCSRRNKECTRSARKKSGPAKGTKYAPRRKRSV 189 LRKSCDYCVR+KR C G PC+LC+RRNK C RS +K+SGPAKGTKY R+ R + Sbjct: 23 LRKSCDYCVRMKRGCSGGTPCALCNRRNKNCIRSIKKRSGPAKGTKYCKRKPRKI 77
BLAST of mRNA_L-elsbetiae_contig1208.1750.1 vs. uniprot
Match: A0A6H5JII0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JII0_9PHAE) HSP 1 Score: 65.1 bits (157), Expect = 2.020e-7 Identity = 30/43 (69.77%), Postives = 36/43 (83.72%), Query Frame = 1 Query: 55 LKRACDGKNPCSLCSRRNKECTRSARKKSGPAKGTKYAPRRKR 183 +KRACDG +PC+LCSRR K C R R+KSGPAKG KYAPRR++ Sbjct: 1 MKRACDGGSPCALCSRRGKVCERRLRRKSGPAKGAKYAPRRRK 43
BLAST of mRNA_L-elsbetiae_contig1208.1750.1 vs. uniprot
Match: D8LM00_ECTSI (Zn(2)-C6 fungal-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM00_ECTSI) HSP 1 Score: 58.5 bits (140), Expect = 3.030e-5 Identity = 27/52 (51.92%), Postives = 36/52 (69.23%), Query Frame = 1 Query: 7 QDKSVELRKSCDYCVRLKRACDGKNPCSLCSRRNKECTRSARKKSGPAKGTK 162 +D V LR +CD C R+KR CDG PC+ C RR++ C S ++KSGP KG+K Sbjct: 201 RDTMVVLRSACDACHRMKRKCDGLQPCNRCRRRSRPCGYSYKQKSGPPKGSK 252
BLAST of mRNA_L-elsbetiae_contig1208.1750.1 vs. uniprot
Match: A0A6H5JM19_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM19_9PHAE) HSP 1 Score: 58.5 bits (140), Expect = 3.320e-5 Identity = 27/52 (51.92%), Postives = 36/52 (69.23%), Query Frame = 1 Query: 7 QDKSVELRKSCDYCVRLKRACDGKNPCSLCSRRNKECTRSARKKSGPAKGTK 162 +D V LR +CD C R+KR CDG PC+ C RR++ C S ++KSGP KG+K Sbjct: 177 RDTMVVLRSACDACHRMKRKCDGLQPCNRCRRRSRPCGYSYKQKSGPPKGSK 228 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1208.1750.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1208.1750.1 >prot_L-elsbetiae_contig1208.1750.1 ID=prot_L-elsbetiae_contig1208.1750.1|Name=mRNA_L-elsbetiae_contig1208.1750.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=580bp PSQDKSVELRKSCDYCVRLKRACDGKNPCSLCSRRNKECTRSARKKSGPAback to top mRNA from alignment at L-elsbetiae_contig1208:23729..26054- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1208.1750.1 ID=mRNA_L-elsbetiae_contig1208.1750.1|Name=mRNA_L-elsbetiae_contig1208.1750.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2326bp|location=Sequence derived from alignment at L-elsbetiae_contig1208:23729..26054- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1208:23729..26054- >mRNA_L-elsbetiae_contig1208.1750.1 ID=mRNA_L-elsbetiae_contig1208.1750.1|Name=mRNA_L-elsbetiae_contig1208.1750.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3480bp|location=Sequence derived from alignment at L-elsbetiae_contig1208:23729..26054- (Laminarionema elsbetiae ELsaHSoW15)back to top |