mRNA_L-elsbetiae_contig12070.1740.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12070.1740.1
Unique NamemRNA_L-elsbetiae_contig12070.1740.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig12070.1740.1 vs. uniprot
Match: A0A6H5K075_9PHAE (DUF4470 domain-containing protein (Fragment) n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K075_9PHAE)

HSP 1 Score: 374 bits (959), Expect = 5.430e-119
Identity = 176/227 (77.53%), Postives = 204/227 (89.87%), Query Frame = 1 
Query:   25 AAAAYAALTDEDWCTTQVHECAMLLGVVPVSSIVPAVGHFHTMLEAARVAKTNKKNADIGDLGQRLRLAWKQACLIDRRAGVFVGSKDRSAMTLHPRVYLSPDDFSAMVLPFWLFMARNLYVETGDVVEDLHKHYSTGLFDANVVAQLEVHLHLLSLYTTEALGATDVVRWARDCPWWERKPPAEGVVPPGAPGMCRVVMIASEEAVAIIRQLRDPSLCVLMHDESQ 705
            AAAAYAALTDEDWCTT+V ECA+LLGVVPVS + PAVGHFHTMLEAAR AKTNKKNADIGDLGQRLRLAWKQ CL+D+RAG FV SKDR A TLHPRV LSP +F+ M+LPFWLFM R+LYVE  ++VE LH++YSTGLFD+NVV QL+VH+HLLSL+ TEA+GATDVVRWA DCPWW++KP AEGVVP G+PGMCRVVM+A EEAV+I+R LR+P+LC+LM+DESQ
Sbjct:  592 AAAAYAALTDEDWCTTKVQECALLLGVVPVSGVAPAVGHFHTMLEAARAAKTNKKNADIGDLGQRLRLAWKQLCLMDQRAGAFVASKDRVATTLHPRVDLSPAEFADMMLPFWLFMTRSLYVEAANLVEHLHRNYSTGLFDSNVVDQLDVHMHLLSLFRTEAMGATDVVRWALDCPWWDKKPSAEGVVPKGSPGMCRVVMLAPEEAVSIVRHLRNPALCILMNDESQ 818
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12070.1740.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K075_9PHAE5.430e-11977.53DUF4470 domain-containing protein (Fragment) n=2 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12070contigL-elsbetiae_contig12070:262..5026 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size723
Cds size723
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12070.1740.1prot_L-elsbetiae_contig12070.1740.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12070 262..5026 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815406.9240127-CDS-L-elsbetiae_contig12070:261..3611622815406.9240127-CDS-L-elsbetiae_contig12070:261..361Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12070 262..361 +
1691682883.902718-CDS-L-elsbetiae_contig12070:261..3611691682883.902718-CDS-L-elsbetiae_contig12070:261..361Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12070 262..361 +
1622815406.9353673-CDS-L-elsbetiae_contig12070:802..9871622815406.9353673-CDS-L-elsbetiae_contig12070:802..987Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12070 803..987 +
1691682883.9112263-CDS-L-elsbetiae_contig12070:802..9871691682883.9112263-CDS-L-elsbetiae_contig12070:802..987Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12070 803..987 +
1622815406.9461238-CDS-L-elsbetiae_contig12070:1544..16611622815406.9461238-CDS-L-elsbetiae_contig12070:1544..1661Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12070 1545..1661 +
1691682883.9214861-CDS-L-elsbetiae_contig12070:1544..16611691682883.9214861-CDS-L-elsbetiae_contig12070:1544..1661Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12070 1545..1661 +
1622815406.955814-CDS-L-elsbetiae_contig12070:3829..39341622815406.955814-CDS-L-elsbetiae_contig12070:3829..3934Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12070 3830..3934 +
1691682883.930299-CDS-L-elsbetiae_contig12070:3829..39341691682883.930299-CDS-L-elsbetiae_contig12070:3829..3934Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12070 3830..3934 +
1622815406.9661443-CDS-L-elsbetiae_contig12070:4810..50261622815406.9661443-CDS-L-elsbetiae_contig12070:4810..5026Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12070 4811..5026 +
1691682883.9386344-CDS-L-elsbetiae_contig12070:4810..50261691682883.9386344-CDS-L-elsbetiae_contig12070:4810..5026Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12070 4811..5026 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12070.1740.1

>prot_L-elsbetiae_contig12070.1740.1 ID=prot_L-elsbetiae_contig12070.1740.1|Name=mRNA_L-elsbetiae_contig12070.1740.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=241bp
MKKKEAKLAAAAYAALTDEDWCTTQVHECAMLLGVVPVSSIVPAVGHFHT
MLEAARVAKTNKKNADIGDLGQRLRLAWKQACLIDRRAGVFVGSKDRSAM
TLHPRVYLSPDDFSAMVLPFWLFMARNLYVETGDVVEDLHKHYSTGLFDA
NVVAQLEVHLHLLSLYTTEALGATDVVRWARDCPWWERKPPAEGVVPPGA
PGMCRVVMIASEEAVAIIRQLRDPSLCVLMHDESQVCVCV*
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mRNA from alignment at L-elsbetiae_contig12070:262..5026+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12070.1740.1 ID=mRNA_L-elsbetiae_contig12070.1740.1|Name=mRNA_L-elsbetiae_contig12070.1740.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4765bp|location=Sequence derived from alignment at L-elsbetiae_contig12070:262..5026+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGAAGAAGGAGGCGAAGCTGGCCGCCGCCGCGTACGCCGCCCTCAC
GGACGAGGATTGGTGCACCACCCAGGTCCACGAGTGCGCCATGCTGCTCG
GTGAGCTTGTTTCGGTCCGGCCCGGCTTGGCTCGGCTCGGCTCGGCCTGT
GTGTCGAAGGGCCGCGATAGACGGGGCCGGGGCCGCCCGAGGAAAAGAAG
CGCCGGTGCTTGCTCGTCGCGACGATATGTTGTAGGTCTTATACTTAGTA
TGTATGGTGGTGTTTTGTGCCGCTTTGTCTCTATCTGGACTAGCTACTGT
AGTCCTTTGTCAATATATACTTCGAAGTTTATATTTTAGGTGTGCTGTGG
TGTGTGACCCCGTGCTCTCAACACCGACGATCGCTGTTGTTGCCGCCGTC
GCTGCTGTTGTTGTTGCTGCTGCCGCCTGCTGCCGCCTGCTGCCGCCTGC
TGCCTGCTGCCTGCTGCCTGCTGCCGTCGCCGTGTGGGGGTGTAAATGCG
ATGCGCACGCTTCCGGCCGGAATCGAAAAAACAAAAAAAAGGGGTTGTGC
CGGTTAGCAGTATCGTGCCCGCCGTCGGGCACTTCCATACCATGCTGGAA
GCCGCCCGAGTGGCCAAGACCAACAAAAAGAACGCAGACATCGGGGACCT
CGGGCAGCGGCTGCGCCTCGCCTGGAAGCAGGCCTGCCTCATTGACCGCC
GCGCCGGCGTCTTTGTCGGGTCCAAGGTATAAATTATAGGTGACAAGAGA
GGAAGGGGGGGAAGGAAAGGGGCAGGAAGGGCAGAAAGCGCACGCGCGGC
CGACCCTTTTGAGACGTAAGATATAAATATGTCCATACGTACATGCGAAG
TCAAGACAAGGTGCGTGAGACGGTGAAGTCGAGGAGGCGTTGTCTGCGAG
CGACCCGGGGGGGGGTAGGTACTTGAGCCAACGAACCACGCATCACTAAA
TAGATAGATAGGTACCACCGAGACGAGATAATACACGAGACGTGAGGGAT
GTGCGAGCATTCATGAATACAAAGAGATGGGCCGACTCGTGCCCCTCTCT
GTCTTCCGCGCGCTTGCTGATCTCTCGCTTGACCCCCTCTTTTGCCCTGC
CGCCGCCCCGCCCCCCCCCCCGCCTCCTTTGTTGCGCGTTCGTCACGCAT
ATAACGTGATGTGACGTGCTGTGCTGTGCTGTGCTGTGCTGTGCTGTGCT
GTGATGTGATGGGATGTGATGCAACGGGCGCTGTTGACGGTTACGCCGAA
CCGCAACAACCGATACTGGCTGATTGGATGCAGGACCGGAGCGCCATGAC
CCTCCACCCGCGGGTCTACCTATCCCCGGATGATTTTTCGGCCATGGTGC
TTCCTTTCTGGTTGTTTATGGCGCGCAACCTTTATGTTGAGACAGGAGAT
GTGAGTTTTTGTTTTCCCCCCTTCTTTGTTGTTTTAGACGCCGCTGATGG
TGTCGGGGTCCAGTTACGGGGTCGCGGGGGAGAGGTTGGGGGATTGGATT
TGCTAGTGTTTAGTTGCCGTGAGCGGCGTGTGTGTTGCCGGTCGGAGGTA
TTTTTTGTTGCACCGCATTCGCTCCTTTCTGGAGGCGATTTTTTGTGTGT
GTGTCCATGTGTGCGTGTGTGCGTGTGTGCGTGTGCGCAGCCGTTGTGGA
CCGTACCGGGTTTGCAGAGAAGAAGCGGGACGGGTGCATGCTGTAGAGAC
AGACGGCCATGGCCGAGCGTATCTCGTTAAAATACTATGAAACACGTCAT
GTACCTATAGTGTTTTCCAATACTTCGTTGTGTTCTTTTTTCACCGTTTG
GTTCTTGCAGCTGCGTGGGAATTTCGCGCTTCAGTATTGTCTCTCGTCCT
CCTCTCTGCACGCCCCCTTGCGTCTCTCTGCGTGTCACTCGTTTGCTCTG
CAACGCAAGTGTTTATTAGCATACCTGCGTCGCCTCGCCTCGCCCTCGCC
TTAGCCTTGCCTGCTTGTATCTGTCCTGTCTGTCTGTCTGTCTGTCTGTC
TGTCTTGTTTGTCTGTCTGTCTGTCTGTCTGCCTGCCTGCCTGCCTGTCT
GTCTGTCTGTCTTTCTGTCTGTCTGTCTGTCTGTCTGTCTATCTGCCTGC
CTGTCTGTCTGTCTGCCTTGTTTGTTTGTCTGTCTGTCTGTCTCTTCCTC
CTTGTTTCATCCCCAACCCCACCTCACATCTTCCTGCCTGCCTGCCCCCC
TTCGTCCCTGCTTGTTCTCGGCGCGTGCTGGTTTTCAATCTGCCATCTTT
GGATTCGATGACATCATAACGACAGTGTCCAAAGGTTTTGGAAGGGGGGC
AGCAGCAGCTGCGGGTCTCCCCCTACACGCCGGCCTCGTTCGCTCGCCTT
TTGTCCCACGCCCTAAGGTTTTTGAAGCTCGACACTTCGCACACTAACCA
GGTATGTACATACCTACATGTGTATATTCATACAAGATCCCCCTTCGGGG
CGAGCTGATGAGAGCACAGCGGTAGCAGGGGGTGATGCAAGACCAAAGCA
AACAGGCGAAGGCATCAGCAGAAGTAGTCCTAAATTTCCAACTGAAAAAC
AAAGCAGCTGCTGCTGCTGTGTTTTTGAGCACCGAAGCAGCAGCTGCTAC
TGCTACTACTGTGCATACTGAAACAAACAAACAACTGCTTCTTTTCTGTG
CTGACCCTCCCTTGAGCCAAACAGAGGCTGTGTCGGTCTGTGCTCATCAG
GTACAATAATAGCTGTCCAGTCTCCTGGCATGTGCAGCCATGCTCAAAAC
AGCTGCTTCATACTGACGGTTTTTTGGGCTGTTGGAGGCCGATAGCCTAC
TGATTCAGATTTCGGAACAGAAGTTCCCAGAGATACTTCTAGGCCACAAA
ACGTCCTGCACGGTTCGATAAAATTTGCTCAGCAGAAGGAGGAAACGTCT
TGTGTGCAAATGGGGGGGGCGCGACGGAGGGGGGAGGAGGAAGGGGGGCA
AGAGCGAGATGAGGGGGGGGGGGGGGGGAGAGGGGGGACAGGNNNNCCGC
GCGCCCCCCCGCCGCCCGCCCCCCCCGCGGCGTGCCCGGCGGGCGGGGGG
GGGGGGGGTAGGAGAGGGGGCAAAAGAGGCTGGACAACCGCTCTCTGAAT
GTTCACGTTCACAGCAGCAGCAGCAGCAGCAGCAGCTCGAAGGATGAATG
TGCGATGTGCGATGTGACCAACACATACAACCGTACGGTTGGAAGCTTCG
CGGATAAAATATTTTTATTTGCGTCAAGATGGTCGCAGTGTTAATTAAAA
GGACAAGAGACGGGAAAAACACAGGACGGTCAGTTTAGTCAGACGATGAA
GGATGGAGGAGAAGAGGCGCACAGAAGACGACCCAATCAGCAACACATGC
ACGTGGCCTAAGTATCCGTTTTGCTCGAGGCTTTTATTTTCGATCCAGCC
GCCGGCGTCGATCGCATTGTCACCCTCCTCTCCACCCCCGCTCGGTCTTT
TATTTTGTCTCCTCTTTTTGTCGAGCGGCATGCTATACATGCGCAATGTC
ATGTCGCTCAATCACGCTTGCGTCCTTTTGCGGCACGCACGCACTGCACG
CCACGCGGGCATTATTAGGTTGTGGAAGACCTTCACAAGCACTATTCTAC
GGGGCTGTTCGACGCCAACGTTGTGGCGCAGCTCGAGGTCCATTTGCACC
TCTTGTCCCTGTACACGACTGAGGTGAGAGGCGGGGGGGGAGGGGGCTTG
TGGATATCGTACATGGGTACATACGGCACACACCGCGGGGCTACCACACC
GCGACTGGAGGGTCTCTTGGTGTCCGTTGCAGCCGTACTTGGCAGTGAAT
GGGGAGTGTTGTTCGATCGCAGGCAATAAAAGGCTGTTGCATTTAATCAA
TGTTCGGTTGGTGTACCGTAAGTGACACAGATACCACACCCCCTGGGTCG
AATTTTAGAGCTCGATTACTCCGTAACGAAGAAGGTGCCAGCTCCAAACA
ACACATTTTCGGACAGCCCTCGACCAGATCTTTCCAACGCCACCCCTTTC
GACACTGTCATTCTTTTCGCTGGAGAGGAATCGAGCTTTGAAAATCTGTC
CAGGGGGTGTGGTATCTTGTAGAAAGGCATTTATTTCGAGGTTGTTGTCG
GTAAATGGGTATAGACGGTCTATCTAGCGTCATTGGACCTTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTTACGAAGTCGTGATCAGAGAGAGACAA
GACAGATTCTGGTATTGTAGCGTAGTGTTATGGTAGTGCATTGTAATCTG
CAGCGCGCCGCCGCCTCGTTTCGCCGCCGGCTATGTCTGTGGCGGCTAGA
CCGAAACAATCAGACCATGTTGCCAACACAACCCGCTTACTTGCTGCTGG
CAGCGAGCGCTGCTGAACACGCATGTACCTCGATAGACTTGGTTTACTTC
CAGCCGAAGCGCTGCGGAACACGTATGTGTTTTATGTGTTTTTGTGTGTT
TTGTGTGTTTTGTGTGTTTTTCGTGTTGTTCTTGTGTGTTTTATTTACCC
ACGTATTCATTTTTGTACGTGTACGTGCCACGCGGATGCGAACAAAAAGG
CCTTGGGCGCCACGGACGTCGTGCGCTGGGCCCGTGACTGCCCCTGGTGG
GAGAGGAAGCCCCCCGCCGAGGGAGTCGTCCCCCCCGGCGCCCCCGGCAT
GTGCCGCGTTGTTATGATCGCCTCGGAGGAGGCCGTTGCCATCATCCGAC
AGCTGCGAGATCCGAGCCTCTGCGTCCTCATGCACGATGAGAGTCAGGTG
TGTGTGTGTGTGTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12070:262..5026+

>mRNA_L-elsbetiae_contig12070.1740.1 ID=mRNA_L-elsbetiae_contig12070.1740.1|Name=mRNA_L-elsbetiae_contig12070.1740.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1446bp|location=Sequence derived from alignment at L-elsbetiae_contig12070:262..5026+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGAAGAAGGAGGCGAAGCTGGCCGCCGCCGCGTACGCCGCCCTCAC
GGACGAGGATTGGTGCACCACCCAGGTCCACGAGTGCGCCATGCTGCTCG
ATGAAGAAGAAGGAGGCGAAGCTGGCCGCCGCCGCGTACGCCGCCCTCAC
GGACGAGGATTGGTGCACCACCCAGGTCCACGAGTGCGCCATGCTGCTCG
GGGTTGTGCCGGTTAGCAGTATCGTGCCCGCCGTCGGGCACTTCCATACC
ATGCTGGAAGCCGCCCGAGTGGCCAAGACCAACAAAAAGAACGCAGACAT
CGGGGACCTCGGGCAGCGGCTGCGCCTCGCCTGGAAGCAGGCCTGCCTCA
TTGACCGCCGCGCCGGCGTCTTTGTCGGGTCCAAGGGGTTGTGCCGGTTA
GCAGTATCGTGCCCGCCGTCGGGCACTTCCATACCATGCTGGAAGCCGCC
CGAGTGGCCAAGACCAACAAAAAGAACGCAGACATCGGGGACCTCGGGCA
GCGGCTGCGCCTCGCCTGGAAGCAGGCCTGCCTCATTGACCGCCGCGCCG
GCGTCTTTGTCGGGTCCAAGGACCGGAGCGCCATGACCCTCCACCCGCGG
GTCTACCTATCCCCGGATGATTTTTCGGCCATGGTGCTTCCTTTCTGGTT
GTTTATGGCGCGCAACCTTTATGTTGAGACAGGAGATGACCGGAGCGCCA
TGACCCTCCACCCGCGGGTCTACCTATCCCCGGATGATTTTTCGGCCATG
GTGCTTCCTTTCTGGTTGTTTATGGCGCGCAACCTTTATGTTGAGACAGG
AGATGTTGTGGAAGACCTTCACAAGCACTATTCTACGGGGCTGTTCGACG
CCAACGTTGTGGCGCAGCTCGAGGTCCATTTGCACCTCTTGTCCCTGTAC
ACGACTGAGGTTGTGGAAGACCTTCACAAGCACTATTCTACGGGGCTGTT
CGACGCCAACGTTGTGGCGCAGCTCGAGGTCCATTTGCACCTCTTGTCCC
TGTACACGACTGAGGCCTTGGGCGCCACGGACGTCGTGCGCTGGGCCCGT
GACTGCCCCTGGTGGGAGAGGAAGCCCCCCGCCGAGGGAGTCGTCCCCCC
CGGCGCCCCCGGCATGTGCCGCGTTGTTATGATCGCCTCGGAGGAGGCCG
TTGCCATCATCCGACAGCTGCGAGATCCGAGCCTCTGCGTCCTCATGCAC
GATGAGAGTCAGGTGTGTGTGTGTGTGTAGGCCTTGGGCGCCACGGACGT
CGTGCGCTGGGCCCGTGACTGCCCCTGGTGGGAGAGGAAGCCCCCCGCCG
AGGGAGTCGTCCCCCCCGGCGCCCCCGGCATGTGCCGCGTTGTTATGATC
GCCTCGGAGGAGGCCGTTGCCATCATCCGACAGCTGCGAGATCCGAGCCT
CTGCGTCCTCATGCACGATGAGAGTCAGGTGTGTGTGTGTGTGTAG
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