mRNA_L-elsbetiae_contig12067.1736.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12067.1736.1
Unique NamemRNA_L-elsbetiae_contig12067.1736.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig12067.1736.1 vs. uniprot
Match: A0A7S0HHN8_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0HHN8_9EUKA)

HSP 1 Score: 59.3 bits (142), Expect = 9.300e-8
Identity = 45/130 (34.62%), Postives = 65/130 (50.00%), Query Frame = 3
Query:   75 RRLTSLHMAAIGGRPRLVAPLVQAGARIDARDSKGSTPMYMAVDRNERAVA-EAFVKAKANPSMKPRPSLMVPIGMWEVAG------LAVPTALGLAAARGELDMVRMIVGRRGATFRAEDGSTAMHTAA 443
            R LT+LH+A I G  +++  LV AGA + ARDS G TP+++A +++E A+A  A V A A+   K   +   P+ +   A       LAV T L L A+   +D                DG T +H AA
Sbjct:    1 RGLTALHLAVIAGNVKMIEGLVAAGASLSARDSMGMTPLHVAAEQSEHALAIRALVAAGASLEEKTTRNGRTPLNLAAAALPSNKQLLAVETLLALGASHKAIDT---------------DGDTPLHAAA 115          
BLAST of mRNA_L-elsbetiae_contig12067.1736.1 vs. uniprot
Match: A0A7R8WQV0_9CRUS (Hypothetical protein n=1 Tax=Cyprideis torosa TaxID=163714 RepID=A0A7R8WQV0_9CRUS)

HSP 1 Score: 58.2 bits (139), Expect = 3.480e-6
Identity = 52/182 (28.57%), Postives = 88/182 (48.35%), Query Frame = 3
Query:   21 AVAKMLLIHGADPNMANGRRLTSLHMAAIGGRPRLVAPLVQAGARIDARDSKGSTPMYMAVDRNERAVAEAFVKAKANPSMKPRPSLMVPIGMWEVAGLAVPTALGLAAARGELDMVRMIVGRRGATFRAED--GSTAMHTAAQGSRRVDTPGDRSSIIAVLAAAKVDPEAALKDSKRTALH 560
            +V ++LL +GADPN+A+    + LH A       L   L+Q GA ++A+D +G TP+++A++ N  +V E  +   A+P++        P+   E A  A                  +++ ++GA   A+D  G T +  A        T  +R S++ VL A   DP  A +D +R+ LH
Sbjct:  308 SVVEVLLANGADPNIASEVERSPLHQAESAETAEL---LIQKGAEVNAKDRRGKTPLFVAIENNRHSVVEVLLANGADPNIASEDERS-PLHQAESAETA-----------------ELLI-QKGAEVNAQDERGKTPLFVA--------TDWNRHSVVEVLLANGADPNIASED-ERSPLH 458          
BLAST of mRNA_L-elsbetiae_contig12067.1736.1 vs. uniprot
Match: A0A7S0RUE4_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0RUE4_9CHLO)

HSP 1 Score: 54.3 bits (129), Expect = 4.320e-6
Identity = 36/85 (42.35%), Postives = 46/85 (54.12%), Query Frame = 3
Query:   84 TSLHMAAIGGRPRLVAPLVQAGARIDARDSKGSTPMYMA--VDRNERAVAEAFVKAKANPSMKPRPSLMVPIGMWEVAGLAVPTA 332
            T LH+AA G  P  VA L++AGAR+DA+D  G TP+ +   ++ NE  VA AF     +    P PSLM   G  E    A P A
Sbjct:    2 TPLHLAAKGNHPAAVAKLIEAGARVDAKDKNGQTPLQLVPHLNTNEAMVA-AFAGNHTDVPASPGPSLMPAAG--EAPEAASPAA 83          
BLAST of mRNA_L-elsbetiae_contig12067.1736.1 vs. uniprot
Match: UPI000C719CCA (ankyrin-1-like n=1 Tax=Trichogramma pretiosum TaxID=7493 RepID=UPI000C719CCA)

HSP 1 Score: 57.8 bits (138), Expect = 4.790e-6
Identity = 68/232 (29.31%), Postives = 99/232 (42.67%), Query Frame = 3
Query:   24 VAKMLLIHGADPNMANGRRLTSLHMAAIGGRPR--LVAPLVQA----GARID--ARDSKGSTPMYMAVDRNERAVAEAFVKAKANPSMKPRPSLMVPIGMWEVAGLAVPTALGLAAARGELDMVRMIVGRRGATFR--AED--GSTAMHTA-AQGSRRVDTPGDRSSIIAVLAAAKVDPEAALKDSKRTALHIVCSN*GSSPLMAHSLLIAGAAPT-----AKDKSGNSPLH 665
            +A+ LL +GADPN+ANG   T LH+     R    L + L +A    G  +D  A DSKG TP+ +A+   +R + E  +K  A+P    R +      +  +A       L         D    I+       R  A+D  G+T +H A A  +RR             L   + DP     D + TALH++C       L+     +  A  T     A+DK GN+PLH
Sbjct:  259 MAEFLLKNGADPNLANGAGETGLHIVCRRERGSRCLASKLFEACKDVGRTLDVNAEDSKGWTPLNLALFHGKRKMVELLLKEGADPR---RTNSEATTSLHVIASAVAHDFLA--------DQFFQILSESHRPLRVDAQDKLGNTPLHVALANNNRRAAE---------ALLRRQADPNLG-NDERYTALHVICKRDKDDGLLRQFFKMIDAVQTTVEVDARDKEGNTPLH 469          
BLAST of mRNA_L-elsbetiae_contig12067.1736.1 vs. uniprot
Match: A0A5N3X371_MUNRE (Uncharacterized protein n=1 Tax=Muntiacus reevesi TaxID=9886 RepID=A0A5N3X371_MUNRE)

HSP 1 Score: 56.2 bits (134), Expect = 8.610e-6
Identity = 36/80 (45.00%), Postives = 50/80 (62.50%), Query Frame = 3
Query:   24 VAKMLLIHGADPNMANGRRLTS-LHMAAIGGRPRLVAPLVQAGARIDARDSKGSTPMYMAVDRNERAVAEAFVKAKANPS 260
            VAK+LL+HGADPN A+   LT  +H AA  G    +  L +AGAR+D RD+ G  P+ +A +R  R VA  +++A A  S
Sbjct:  129 VAKLLLLHGADPNCADPATLTRPVHDAAREGFLDTLVALHRAGARLDVRDAWGRLPVDLAEERGHRDVA-GYLRAAAEGS 207          
BLAST of mRNA_L-elsbetiae_contig12067.1736.1 vs. uniprot
Match: UPI00187BCA06 (cyclin-dependent kinase inhibitor 2A isoform X2 n=1 Tax=Artibeus jamaicensis TaxID=9417 RepID=UPI00187BCA06)

HSP 1 Score: 53.5 bits (127), Expect = 1.790e-5
Identity = 34/77 (44.16%), Postives = 48/77 (62.34%), Query Frame = 3
Query:   24 VAKMLLIHGADPNMANGRRL-TSLHMAAIGGRPRLVAPLVQAGARIDARDSKGSTPMYMAVDRNERAVAEAFVKAKA 251
            VAK+LL+HGADPN A+   L T  H AA  G    +  L +AGAR+D RD+ G  P+ +A +R  + VA  +++A A
Sbjct:   44 VAKLLLLHGADPNCADPATLATPAHDAAREGFLDTLVALHRAGARLDVRDAWGRLPVDLAEERGHQDVAR-YLRAAA 119          
BLAST of mRNA_L-elsbetiae_contig12067.1736.1 vs. uniprot
Match: UPI001745CA50 (cyclin-dependent kinase 4 inhibitor B-like n=1 Tax=Molossus molossus TaxID=27622 RepID=UPI001745CA50)

HSP 1 Score: 53.5 bits (127), Expect = 1.920e-5
Identity = 31/78 (39.74%), Postives = 46/78 (58.97%), Query Frame = 3
Query:   24 VAKMLLIHGADPNMANGRRLTS-LHMAAIGGRPRLVAPLVQAGARIDARDSKGSTPMYMAVDRNERAVAEAFVKAKAN 254
            VAK+LL+HGADPN A+   LT  +H AA  G    +  L + GAR+D RD+ G  P+ +A +R  R + +    A+ +
Sbjct:   51 VAKLLLLHGADPNCADPDTLTRPVHDAAREGYLETLVVLHRGGARLDVRDAWGRLPVDLAEERGHREITQYLHAAEGS 128          
BLAST of mRNA_L-elsbetiae_contig12067.1736.1 vs. uniprot
Match: A0A067ME63_9AGAM (Uncharacterized protein n=1 Tax=Botryobasidium botryosum FD-172 SS1 TaxID=930990 RepID=A0A067ME63_9AGAM)

HSP 1 Score: 55.1 bits (131), Expect = 2.510e-5
Identity = 61/219 (27.85%), Postives = 89/219 (40.64%), Query Frame = 3
Query:   42 IHGADPNMANGRRLTSLHMAAIGGRPRLVAPLVQAGARIDARDSKGSTPMYMAVDRNERAVAEAFVKAKANPSMKPRPSLMVPIGMWEVAGLAVPTALGLAAARGELDMVRMIVGRRGATF-RAEDGSTAMHTAAQGSRRVDTPGDRSSIIAVLAAAKVDPEAALKDSKRTALHIVCSN*GSSPLMAHSLLIAGAAPTAKDKSGNSPLHHACGISFEGA 695
            +H  D +      L +L      GR  ++  L+ AGA +DA DS+G TP+ +A     +AV                 +L                    A   G    V++++G+  +   RA DG++ +H A    R  D  G R+  +A L  A VD   A  ++  T LH   S   SS ++   LL  GA P A D  G  PLHH  G    G+
Sbjct:   57 VHARDNDGRQPLHLAALRQTFSSGRSEVMRLLLDAGAELDATDSRGDTPLSLA-----KAVH----------------ALCXXXXXXXXXXXXXXXXXHYATEGGSASAVQLLLGKGASPLERARDGTSPLHNALVLMRHPD--GSRA--VASLLGASVDVNTA-NNNGSTPLHCAASLGASSAVLL--LLKVGANPRALDAQGAQPLHHVAGCGLYGS 247          
BLAST of mRNA_L-elsbetiae_contig12067.1736.1 vs. uniprot
Match: A0A6H5IEX6_9HYME (Uncharacterized protein n=2 Tax=Trichogramma brassicae TaxID=86971 RepID=A0A6H5IEX6_9HYME)

HSP 1 Score: 55.8 bits (133), Expect = 2.540e-5
Identity = 77/255 (30.20%), Postives = 112/255 (43.92%), Query Frame = 3
Query:   24 VAKMLLIHGADPNMANGRRLTSLHMAAIGGRPRLVAPLVQAG----------ARIDARDSKGSTPMYMAVDRNERAVAEAFVKAKANPSMKPRPSLMVPIGMWEVAGLAVPTALGLAAARGEL-DMVRMIV--GRRGA-----TFRAEDGSTAMHTAAQGSRRVDTPGDRSSIIAVLAAAKVDPEAALKDSKRTALHIVCSN*GSSPLMAHSL---LIAGAAPTAKDKSGNSPLHHACGISFEGAVAHLMWHGAD 725
            VA  LL HGADPN+AN   +T LH      RP +V  L +A             I+ARDS+G TP+++AV         + ++  A+P+       M   G+         T L  A  R +  DMV +IV  GR+         R + G+TA+H A +        G   S  A+L     +P  A K+   T LHIVCSN      +   +   +       A+D+ G++PLH A  +    +   L+  GAD
Sbjct:  844 VAMALLRHGADPNLANDDGMTPLHTIC-DKRPDIVG-LAEAFFGICDERHLMVDINARDSRGQTPLHLAVKHGNGKAVISLLERGADPNR------MSDTGL---------TPLHWACLRSDDGDMVELIVEFGRKDGRPVLINARDKKGNTALHLAVE-------LGHIQSAEALLRRG-ANPNLANKNGS-TPLHIVCSNYHDITELFFEVCDEIRREVQLDARDRMGDAPLHLALNLVEPESAECLLRRGAD 1072          
BLAST of mRNA_L-elsbetiae_contig12067.1736.1 vs. uniprot
Match: A0A6P3FJ16_OCTDE (cyclin-dependent kinase inhibitor 2A n=1 Tax=Octodon degus TaxID=10160 RepID=A0A6P3FJ16_OCTDE)

HSP 1 Score: 52.4 bits (124), Expect = 3.510e-5
Identity = 31/70 (44.29%), Postives = 45/70 (64.29%), Query Frame = 3
Query:   24 VAKMLLIHGADPNMANGRRLTS-LHMAAIGGRPRLVAPLVQAGARIDARDSKGSTPMYMAVDRNERAVAE 230
            VA++LL+HGADPN A+   L+  +H AA  G    +  L QAGAR+D RD+ G  P+ +A ++  R VA+
Sbjct:   51 VARLLLLHGADPNCADPVSLSRPVHDAAREGFLDTLVALHQAGARLDVRDAWGRLPVDLAEEQGHRDVAQ 120          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12067.1736.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A7S0HHN8_9EUKA9.300e-834.62Hypothetical protein (Fragment) n=1 Tax=Phaeocysti... [more]
A0A7R8WQV0_9CRUS3.480e-628.57Hypothetical protein n=1 Tax=Cyprideis torosa TaxI... [more]
A0A7S0RUE4_9CHLO4.320e-642.35Hypothetical protein (Fragment) n=1 Tax=Chlamydomo... [more]
UPI000C719CCA4.790e-629.31ankyrin-1-like n=1 Tax=Trichogramma pretiosum TaxI... [more]
A0A5N3X371_MUNRE8.610e-645.00Uncharacterized protein n=1 Tax=Muntiacus reevesi ... [more]
UPI00187BCA061.790e-544.16cyclin-dependent kinase inhibitor 2A isoform X2 n=... [more]
UPI001745CA501.920e-539.74cyclin-dependent kinase 4 inhibitor B-like n=1 Tax... [more]
A0A067ME63_9AGAM2.510e-527.85Uncharacterized protein n=1 Tax=Botryobasidium bot... [more]
A0A6H5IEX6_9HYME2.540e-530.20Uncharacterized protein n=2 Tax=Trichogramma brass... [more]
A0A6P3FJ16_OCTDE3.510e-544.29cyclin-dependent kinase inhibitor 2A n=1 Tax=Octod... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12067contigL-elsbetiae_contig12067:2209..2933 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size725
Cds size546
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12067.1736.1prot_L-elsbetiae_contig12067.1736.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12067 2241..2786 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815404.906645-UTR-L-elsbetiae_contig12067:2208..22401622815404.906645-UTR-L-elsbetiae_contig12067:2208..2240Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12067 2209..2240 +
1691682883.43689-UTR-L-elsbetiae_contig12067:2208..22401691682883.43689-UTR-L-elsbetiae_contig12067:2208..2240Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12067 2209..2240 +
1622815404.9327166-UTR-L-elsbetiae_contig12067:2786..29331622815404.9327166-UTR-L-elsbetiae_contig12067:2786..2933Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12067 2787..2933 +
1691682883.4561148-UTR-L-elsbetiae_contig12067:2786..29331691682883.4561148-UTR-L-elsbetiae_contig12067:2786..2933Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12067 2787..2933 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815404.9199579-CDS-L-elsbetiae_contig12067:2240..27861622815404.9199579-CDS-L-elsbetiae_contig12067:2240..2786Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12067 2241..2786 +
1691682883.4469936-CDS-L-elsbetiae_contig12067:2240..27861691682883.4469936-CDS-L-elsbetiae_contig12067:2240..2786Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12067 2241..2786 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12067.1736.1

>prot_L-elsbetiae_contig12067.1736.1 ID=prot_L-elsbetiae_contig12067.1736.1|Name=mRNA_L-elsbetiae_contig12067.1736.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=182bp
MLLIHGADPNMANGRRLTSLHMAAIGGRPRLVAPLVQAGARIDARDSKGS
TPMYMAVDRNERAVAEAFVKAKANPSMKPRPSLMVPIGMWEVAGLAVPTA
LGLAAARGELDMVRMIVGRRGATFRAEDGSTAMHTAAQGSRRVDTPGDRS
SIIAVLAAAKVDPEAALKDSKRTALHIVCSN*
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mRNA from alignment at L-elsbetiae_contig12067:2209..2933+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12067.1736.1 ID=mRNA_L-elsbetiae_contig12067.1736.1|Name=mRNA_L-elsbetiae_contig12067.1736.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=725bp|location=Sequence derived from alignment at L-elsbetiae_contig12067:2209..2933+ (Laminarionema elsbetiae ELsaHSoW15)
TTAAGAACGGGGCACCTCCTGCTGTGGCGAAGATGCTGCTGATCCATGGA GCCGATCCTAATATGGCAAATGGGCGCCGCTTGACCTCATTGCACATGGC GGCCATCGGGGGCCGACCCCGGCTCGTAGCCCCTCTCGTGCAGGCCGGAG CACGCATCGACGCCCGAGATTCGAAGGGCTCCACTCCAATGTATATGGCC GTCGATCGCAACGAGAGGGCGGTGGCAGAGGCGTTCGTGAAAGCCAAAGC TAACCCGAGCATGAAACCTCGCCCGTCTCTGATGGTTCCTATTGGCATGT GGGAGGTAGCTGGCCTTGCTGTCCCTACAGCCCTCGGGCTGGCTGCTGCT CGTGGCGAGCTCGATATGGTGCGGATGATCGTGGGCCGCAGAGGAGCAAC ATTCCGTGCAGAGGATGGTTCAACTGCCATGCACACAGCAGCACAAGGTT CGCGACGTGTTGACACACCGGGTGACCGGAGCAGCATCATCGCCGTGTTG GCTGCCGCAAAGGTTGACCCCGAAGCGGCGTTGAAGGACAGCAAGAGGAC GGCACTGCATATCGTGTGCAGCAACTAGGGCTCCTCACCCCTCATGGCTC ACTCGCTTTTGATCGCCGGGGCGGCCCCCACCGCCAAAGACAAGTCCGGC AACAGCCCTCTGCACCACGCCTGTGGCATATCTTTCGAGGGTGCAGTGGC ACACCTAATGTGGCATGGGGCAGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12067:2209..2933+

>mRNA_L-elsbetiae_contig12067.1736.1 ID=mRNA_L-elsbetiae_contig12067.1736.1|Name=mRNA_L-elsbetiae_contig12067.1736.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1092bp|location=Sequence derived from alignment at L-elsbetiae_contig12067:2209..2933+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTGCTGATCCATGGAGCCGATCCTAATATGGCAAATGGGCGCCGCTT
GACCTCATTGCACATGGCGGCCATCGGGGGCCGACCCCGGCTCGTAGCCC
CTCTCGTGCAGGCCGGAGCACGCATCGACGCCCGAGATTCGAAGGGCTCC
ACTCCAATGTATATGGCCGTCGATCGCAACGAGAGGGCGGTGGCAGAGGC
GTTCGTGAAAGCCAAAGCTAACCCGAGCATGAAACCTCGCCCGTCTCTGA
TGGTTCCTATTGGCATGTGGGAGGTAGCTGGCCTTGCTGTCCCTACAGCC
CTCGGGCTGGCTGCTGCTCGTGGCGAGCTCGATATGGTGCGGATGATCGT
GGGCCGCAGAGGAGCAACATTCCGTGCAGAGGATGGTTCAACTGCCATGC
ACACAGCAGCACAAGGTTCGCGACGTGTTGACACACCGGGTGACCGGAGC
AGCATCATCGCCGTGTTGGCTGCCGCAAAGGTTGACCCCGAAGCGGCGTT
GAAGGACAGCAAGAGGACGGCACTGCATATCGTGTGCAGCAACTAGATGC
TGCTGATCCATGGAGCCGATCCTAATATGGCAAATGGGCGCCGCTTGACC
TCATTGCACATGGCGGCCATCGGGGGCCGACCCCGGCTCGTAGCCCCTCT
CGTGCAGGCCGGAGCACGCATCGACGCCCGAGATTCGAAGGGCTCCACTC
CAATGTATATGGCCGTCGATCGCAACGAGAGGGCGGTGGCAGAGGCGTTC
GTGAAAGCCAAAGCTAACCCGAGCATGAAACCTCGCCCGTCTCTGATGGT
TCCTATTGGCATGTGGGAGGTAGCTGGCCTTGCTGTCCCTACAGCCCTCG
GGCTGGCTGCTGCTCGTGGCGAGCTCGATATGGTGCGGATGATCGTGGGC
CGCAGAGGAGCAACATTCCGTGCAGAGGATGGTTCAACTGCCATGCACAC
AGCAGCACAAGGTTCGCGACGTGTTGACACACCGGGTGACCGGAGCAGCA
TCATCGCCGTGTTGGCTGCCGCAAAGGTTGACCCCGAAGCGGCGTTGAAG
GACAGCAAGAGGACGGCACTGCATATCGTGTGCAGCAACTAG
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