|
|
Homology
BLAST of mRNA_L-elsbetiae_contig12044.1729.1 vs. uniprot
Match: D8LMW6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMW6_ECTSI) HSP 1 Score: 226 bits (577), Expect = 5.430e-69 Identity = 123/149 (82.55%), Postives = 132/149 (88.59%), Query Frame = 1
Query: 1 TDAGAGG-VVDGSSSVAALGLGNGDFLYVKSDSAARSAAKAKLEALERMKAAA-GAKASGSKFVPFPDHARPPPPRATKRIKNWQDLEAMQAQTFSLKPQKDSNAKKISVEESAMDDFVGYLKQTGLGKHRCALLFGRVSPTTNGIKVE 441
TDA AG DG++SVAALGLGNGDFLYVKSDSAAR+AAKAK +AL RMKAA G K GSKFVPFP HARPPPPRATKR+K WQD+EAMQAQTFSLKPQKDSN KKISVE+SAMDDFVGYLKQTGL KHRCALLFGRVSP+TNG+K E
Sbjct: 124 TDASAGSSTADGATSVAALGLGNGDFLYVKSDSAARAAAKAKSDALGRMKAAVVGDKTGGSKFVPFPQHARPPPPRATKRVKTWQDIEAMQAQTFSLKPQKDSNVKKISVEQSAMDDFVGYLKQTGLRKHRCALLFGRVSPSTNGVKRE 272
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | Nuclear pore localisation protein NPL4 |
| Ec32 ortholog | Ec-02_003900.1 |
| Exons | 4 |
| Model size | 588 |
| Cds size | 585 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815404.4475803-CDS-L-elsbetiae_contig12044:2991..3078 | 1622815404.4475803-CDS-L-elsbetiae_contig12044:2991..3078 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig12044 2992..3078 + |
| 1691682883.1393979-CDS-L-elsbetiae_contig12044:2991..3078 | 1691682883.1393979-CDS-L-elsbetiae_contig12044:2991..3078 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig12044 2992..3078 + |
| 1622815404.4596748-CDS-L-elsbetiae_contig12044:3677..3796 | 1622815404.4596748-CDS-L-elsbetiae_contig12044:3677..3796 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig12044 3678..3796 + |
| 1691682883.1570456-CDS-L-elsbetiae_contig12044:3677..3796 | 1691682883.1570456-CDS-L-elsbetiae_contig12044:3677..3796 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig12044 3678..3796 + |
| 1622815404.4717567-CDS-L-elsbetiae_contig12044:4241..4388 | 1622815404.4717567-CDS-L-elsbetiae_contig12044:4241..4388 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig12044 4242..4388 + |
| 1691682883.171086-CDS-L-elsbetiae_contig12044:4241..4388 | 1691682883.171086-CDS-L-elsbetiae_contig12044:4241..4388 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig12044 4242..4388 + |
| 1622815404.4851906-CDS-L-elsbetiae_contig12044:5063..5295 | 1622815404.4851906-CDS-L-elsbetiae_contig12044:5063..5295 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig12044 5064..5295 + |
| 1691682883.1812959-CDS-L-elsbetiae_contig12044:5063..5295 | 1691682883.1812959-CDS-L-elsbetiae_contig12044:5063..5295 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig12044 5064..5295 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig12044.1729.1 >prot_L-elsbetiae_contig12044.1729.1 ID=prot_L-elsbetiae_contig12044.1729.1|Name=mRNA_L-elsbetiae_contig12044.1729.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=195bp
TDAGAGGVVDGSSSVAALGLGNGDFLYVKSDSAARSAAKAKLEALERMKA
AAGAKASGSKFVPFPDHARPPPPRATKRIKNWQDLEAMQAQTFSLKPQKD
SNAKKISVEESAMDDFVGYLKQTGLGKHRCALLFGRVSPTTNGIKVEAMY
EPPQKQQQQQQQPGGGGTYDSSALTEAARVAVAAAAAAQDENGGG back to topmRNA from alignment at L-elsbetiae_contig12044:2992..5297+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig12044.1729.1 ID=mRNA_L-elsbetiae_contig12044.1729.1|Name=mRNA_L-elsbetiae_contig12044.1729.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2306bp|location=Sequence derived from alignment at L-elsbetiae_contig12044:2992..5297+ (Laminarionema elsbetiae ELsaHSoW15)
ACAGATGCGGGGGCTGGCGGCGTCGTCGACGGCTCGTCGTCGGTGGCGGC
TCTGGGGCTAGGGAACGGGGACTTCTTGTACGTCAAGGTGTGCATGTTCG
CTGCGGCTTGAGACGCGGCGGGCAGCTTGTGGCGCAACCACCTTGCACCC
ATGGTGTGCTGCAATGCTTGACCGTCTGTGGTGGGGCGGACTGGGACTCC
GGCGAACTGGTAGATGTTAGGCCGGCTCCGGAGGAGTGGACCACCCGCTG
TTGGCCCACTTCTGCTGCCGACTCTGCTCCTGTAGAAGGCGTTGTTTCCT
CATGCAGCAGCTAGTTAGAGTACGTCGCTTGACGCACGAAAATTAACTTC
ATTAGGTGTCCTCGCACATCAGACTCCCGCCGGCCTCTTCCCTGGGCTTG
AACTCAGCCATTTTCGTGTCGTGCGCATCTGACCCGGTTGTTTGCATTTT
TTTTTTTTACTTCGAAAGTACTCCGATGTACATATTTACATGTGATGCAC
ATCGCACAGCGCGTTCAACTCCGCTGCCAGCTTTTTTTGTGTAGCTCCAC
ACGCGCCCCGAACCATTCGCGGATCTCTTTTTCGTTCAACTCCCGGCCTT
TTTTTTGTCCTCCAAGGCGCGACCGCATGCACCCTCCTCCATTTGTCTTC
GCGCGCACGTTTTTACTCGGCGTTGATAATTCCCAGAGCGATTCGGCCGC
ACGGTCCGCGGCAAAGGCAAAGCTGGAGGCCTTGGAAAGGATGAAGGCGG
CGGCGGGCGCAAAGGCCAGCGGGAGCAAGTTTGTCCCGTTTCCCGACCAC
GCTAGGTGCGATCTGCAGGATTCGCGTGCTTTGGTGCTGCAGCGGTAGCT
GTGCTCGGTCCGGGTGCAGTACGCCCCTCGGAAGTGTCCTGTTGTTACTG
CTGCTACATACATACGGCTGCCACGGTGTGTTGGGTTTGTAGGTTTGCCT
GGCGTGTTTGCGCGAAATCGTGGCTCTGTGTCCTCTTCAGTCGGTGCGGT
GTGCGGCGATACGTACTAAATTAGCATAGTTCTCGTGACCAAGGCAGGAC
AGTTTTTTTTTCTGTCGGGGTTGTCTTCTCTGGCCGATGGGTGTGTTTTG
AAGATGTTGGCGAGCCTTGCTGTTTCGGGTTAGATTCTGCCTCCTCCAAA
ACCTTCCAGCATTGGACCGCCCACCCGACAACGCGGGTTTGTTGTCGCTT
TCCTCGAAAAAAACAAAAAAAAACACCCCAAATCTACCCCCCAAACGCAG
GCCCCCGCCGCCACGCGCGACGAAGCGCATCAAGAACTGGCAAGACCTCG
AGGCCATGCAGGCGCAGACGTTCTCCCTCAAGCCCCAGAAGGACTCGAAC
GCCAAGAAGATCAGCGTCGAGGAGTCCGCCATGGATGACTTCGTCGGGTG
AGCGAAAGAGATGCGTTGCCTGAATCCTCTAAAAGTCCAAAGGCACGTAT
TTTCAGCCACCATGCTTTGTCGTATGCTTTGTGCTTAGAATTCGCGCGTG
TGAGCCTATTCACACCACGGAAAGCAGTAGGTAGCGATTTCAGTGACTGG
TTCGGAGAGGTAATATTCCCCAGTTACTCAGTAGGGGCTAAGACTGCTTG
AAGAGGCGTACTGGCGACGTCTAAGCTCCAAGTTTGGTTGTGAAGCAATC
AGAAATATCGTGCGCGCGCGTTTGTCGGCGGCAGGCGTGCCGCCTCTTCT
TTTGTGGGTTGTTGTGATATGTCTTTTCCATATACGTGTTTCTCCTATTT
TTGTGCTGATCTTGTGCGCGCTTGTGTACTTTGATGTAGATCTATCCCCC
ACCGCATTGTGTCATTTACACACCGTATCGTTTGCACACCAGCTCTTGCC
AGGAGCGCCCCTGCCCCGACCCCACAGCGCGGCACCTCCTTTCCACCTTC
GGTATCCGCCCTGTGACATATTCCCCGAGCGAGCGATCACTGCACGTTCT
TCCTTATCGCCGCTCTTTGGTGATTCGCAGCAGTGCTGTCGTGCAAGCCC
CCTGCCCTGATAACCCCCGCCCCCCTGGTTACAAAATCGTGGGCGTGTGC
ATGCCGCCCGAAACCCATGTAGGTATCTAAAGCAGACGGGCTTGGGGAAG
CACCGGTGCGCCCTGCTCTTCGGCAGGGTGAGCCCGACCACAAACGGTAT
CAAGGTGGAGGCGATGTACGAGCCCCCGCAGAAGCAACAGCAGCAGCAGC
AGCAGCCGGGCGGAGGCGGCACGTACGATTCGTCCGCGTTGACGGAGGCT
GCCAGGGTGGCGGTGGCGGCGGCGGCTGCTGCGCAGGACGAGAACGGGGG
CGGCGG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig12044:2992..5297+ >mRNA_L-elsbetiae_contig12044.1729.1 ID=mRNA_L-elsbetiae_contig12044.1729.1|Name=mRNA_L-elsbetiae_contig12044.1729.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1170bp|location=Sequence derived from alignment at L-elsbetiae_contig12044:2992..5297+ (Laminarionema elsbetiae ELsaHSoW15)
ACAGATGCGGGGGCTGGCGGCGTCGTCGACGGCTCGTCGTCGGTGGCGGC
TCTGGGGCTAGGGAACGGGGACTTCTTGTACGTCAAGACAGATGCGGGGG
CTGGCGGCGTCGTCGACGGCTCGTCGTCGGTGGCGGCTCTGGGGCTAGGG
AACGGGGACTTCTTGTACGTCAAGAGCGATTCGGCCGCACGGTCCGCGGC
AAAGGCAAAGCTGGAGGCCTTGGAAAGGATGAAGGCGGCGGCGGGCGCAA
AGGCCAGCGGGAGCAAGTTTGTCCCGTTTCCCGACCACGCTAGAGCGATT
CGGCCGCACGGTCCGCGGCAAAGGCAAAGCTGGAGGCCTTGGAAAGGATG
AAGGCGGCGGCGGGCGCAAAGGCCAGCGGGAGCAAGTTTGTCCCGTTTCC
CGACCACGCTAGGCCCCCGCCGCCACGCGCGACGAAGCGCATCAAGAACT
GGCAAGACCTCGAGGCCATGCAGGCGCAGACGTTCTCCCTCAAGCCCCAG
AAGGACTCGAACGCCAAGAAGATCAGCGTCGAGGAGTCCGCCATGGATGA
CTTCGTCGGGCCCCCGCCGCCACGCGCGACGAAGCGCATCAAGAACTGGC
AAGACCTCGAGGCCATGCAGGCGCAGACGTTCTCCCTCAAGCCCCAGAAG
GACTCGAACGCCAAGAAGATCAGCGTCGAGGAGTCCGCCATGGATGACTT
CGTCGGGTATCTAAAGCAGACGGGCTTGGGGAAGCACCGGTGCGCCCTGC
TCTTCGGCAGGGTGAGCCCGACCACAAACGGTATCAAGGTGGAGGCGATG
TACGAGCCCCCGCAGAAGCAACAGCAGCAGCAGCAGCAGCCGGGCGGAGG
CGGCACGTACGATTCGTCCGCGTTGACGGAGGCTGCCAGGGTGGCGGTGG
CGGCGGCGGCTGCTGCGCAGGACGAGAACGGGGGCGGCGTATCTAAAGCA
GACGGGCTTGGGGAAGCACCGGTGCGCCCTGCTCTTCGGCAGGGTGAGCC
CGACCACAAACGGTATCAAGGTGGAGGCGATGTACGAGCCCCCGCAGAAG
CAACAGCAGCAGCAGCAGCAGCCGGGCGGAGGCGGCACGTACGATTCGTC
CGCGTTGACGGAGGCTGCCAGGGTGGCGGTGGCGGCGGCGGCTGCTGCGC
AGGACGAGAACGGGGGCGGC back to top
|