mRNA_L-elsbetiae_contig12044.1727.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12044.1727.1
Unique NamemRNA_L-elsbetiae_contig12044.1727.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig12044.1727.1 vs. uniprot
Match: D8LMW5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMW5_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 9.590e-23
Identity = 56/80 (70.00%), Postives = 61/80 (76.25%), Query Frame = 1 
Query:  130 LSPVSSTLSSS-----------LRAAKHADRVSPLFGIKRKVKAEMESNFSGKVVEPAGAETSMFGSDANALFDVIEKNK 336
            LSP S+ LSSS            R+AK A+R++PL GIKRKVK EME NFSGKVVEPAGA TSMFGSDANALFDVIEKNK
Sbjct:   33 LSPASAFLSSSPPRXXXXXXXXXRSAKRAERLAPLHGIKRKVKVEMEENFSGKVVEPAGAATSMFGSDANALFDVIEKNK 112
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12044.1727.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LMW5_ECTSI9.590e-2370.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12044contigL-elsbetiae_contig12044:667..1630 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-02_003890.1
Exons2
Model size462
Cds size462
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815404.353295-CDS-L-elsbetiae_contig12044:666..8851622815404.353295-CDS-L-elsbetiae_contig12044:666..885Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12044 667..885 -
1691682883.0917351-CDS-L-elsbetiae_contig12044:666..8851691682883.0917351-CDS-L-elsbetiae_contig12044:666..885Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12044 667..885 -
1622815404.3636422-CDS-L-elsbetiae_contig12044:1387..16301622815404.3636422-CDS-L-elsbetiae_contig12044:1387..1630Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12044 1388..1630 -
1691682883.100182-CDS-L-elsbetiae_contig12044:1387..16301691682883.100182-CDS-L-elsbetiae_contig12044:1387..1630Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12044 1388..1630 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12044.1727.1prot_L-elsbetiae_contig12044.1727.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12044 667..1630 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12044.1727.1

>prot_L-elsbetiae_contig12044.1727.1 ID=prot_L-elsbetiae_contig12044.1727.1|Name=mRNA_L-elsbetiae_contig12044.1727.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=154bp
MSSQRTFGRRSSRSRGRSLNWALTFLSSALLAALSHVTPASAFLSPVSST
LSSSLRAAKHADRVSPLFGIKRKVKAEMESNFSGKVVEPAGAETSMFGSD
ANALFDVIEKNKKKAAEAAAAALAGGDEDEGGEEGGAAQGGGAGDTEESG
KTA*
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mRNA from alignment at L-elsbetiae_contig12044:667..1630-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12044.1727.1 ID=mRNA_L-elsbetiae_contig12044.1727.1|Name=mRNA_L-elsbetiae_contig12044.1727.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=964bp|location=Sequence derived from alignment at L-elsbetiae_contig12044:667..1630- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCTTCACAACGGACGTTTGGCCGGAGAAGCAGCAGGAGCCGTGGCAG
AAGCCTGAACTGGGCCCTGACATTTTTGAGCAGTGCCCTCCTCGCAGCAC
TATCGCACGTAACGCCGGCGTCTGCCTTCCTGTCGCCAGTGTCGTCCACG
TTGTCGTCATCCTTGCGGGCGGCCAAGCACGCCGACAGAGTCTCGCCGCT
GTTCGGCATCAAAAGGAAGGTCAAGGCCGAGATGGAGTCGAACGTGAGTG
ATGGTCAGCGACACTGACGCCTGAGCTGTATGGGCGAAGCAGCGATTTAA
ATTCGCACACATGGAAGCATTCCTTTTTGTGCGGAGACCTCGGCTTTGCT
TGTGCTTGGTGAACGGCGAAGTCAGCAGGCTGCCGCTCGCGCCGTAGAGG
GCTGTATTGTAGCCCTCGCCTGCCTGCCTTCCTGCCTGCCTGCCTCCTTC
CGGCCTTTTTTGTTGCTCACAAGTCGCCGGTGCGAGTTTTTTTGTTCCCA
GGATCGCGCTGCCACATTCTCACCGCAGCAGCTGCTGTAAATGAAGTGCA
GCTTGCAGCTCGAGCCCCTTGCACTTGCGTTAATTTTGTATGCTGTCGTA
TATTGCCAGTATTTAGTATTTAGAGACCTGCTGGTTGGTGGGAGGGGTCA
AGAATTCCAGGGAGTTGTTTTCGCTCCACCGACCTTTTTATCAATGCCTG
TTTTTGGTTTTTCGTGTAATTTCGTTCTCTTTTTCCTTTGTTCAGTTCTC
CGGCAAGGTTGTGGAGCCTGCCGGCGCGGAAACGAGCATGTTCGGGAGCG
ACGCTAACGCTCTCTTCGACGTGATCGAGAAGAACAAGAAGAAAGCCGCG
GAAGCAGCCGCTGCTGCGCTGGCCGGTGGTGATGAGGATGAGGGCGGGGA
GGAAGGGGGAGCAGCACAAGGCGGAGGCGCAGGCGATACGGAGGAAAGCG
GGAAGACCGCATGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12044:667..1630-

>mRNA_L-elsbetiae_contig12044.1727.1 ID=mRNA_L-elsbetiae_contig12044.1727.1|Name=mRNA_L-elsbetiae_contig12044.1727.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=924bp|location=Sequence derived from alignment at L-elsbetiae_contig12044:667..1630- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCTTCACAACGGACGTTTGGCCGGAGAAGCAGCAGGAGCCGTGGCAG
AAGCCTGAACTGGGCCCTGACATTTTTGAGCAGTGCCCTCCTCGCAGCAC
TATCGCACGTAACGCCGGCGTCTGCCTTCCTGTCGCCAGTGTCGTCCACG
TTGTCGTCATCCTTGCGGGCGGCCAAGCACGCCGACAGAGTCTCGCCGCT
GTTCGGCATCAAAAGGAAGGTCAAGGCCGAGATGGAGTCGAACATGTCTT
CACAACGGACGTTTGGCCGGAGAAGCAGCAGGAGCCGTGGCAGAAGCCTG
AACTGGGCCCTGACATTTTTGAGCAGTGCCCTCCTCGCAGCACTATCGCA
CGTAACGCCGGCGTCTGCCTTCCTGTCGCCAGTGTCGTCCACGTTGTCGT
CATCCTTGCGGGCGGCCAAGCACGCCGACAGAGTCTCGCCGCTGTTCGGC
ATCAAAAGGAAGGTCAAGGCCGAGATGGAGTCGAACTTCTCCGGCAAGGT
TGTGGAGCCTGCCGGCGCGGAAACGAGCATGTTCGGGAGCGACGCTAACG
CTCTCTTCGACGTGATCGAGAAGAACAAGAAGAAAGCCGCGGAAGCAGCC
GCTGCTGCGCTGGCCGGTGGTGATGAGGATGAGGGCGGGGAGGAAGGGGG
AGCAGCACAAGGCGGAGGCGCAGGCGATACGGAGGAAAGCGGGAAGACCG
CATGATTCTCCGGCAAGGTTGTGGAGCCTGCCGGCGCGGAAACGAGCATG
TTCGGGAGCGACGCTAACGCTCTCTTCGACGTGATCGAGAAGAACAAGAA
GAAAGCCGCGGAAGCAGCCGCTGCTGCGCTGGCCGGTGGTGATGAGGATG
AGGGCGGGGAGGAAGGGGGAGCAGCACAAGGCGGAGGCGCAGGCGATACG
GAGGAAAGCGGGAAGACCGCATGA
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