mRNA_L-elsbetiae_contig12013.1713.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12013.1713.1
Unique NamemRNA_L-elsbetiae_contig12013.1713.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig12013.1713.1 vs. uniprot
Match: A0A6H5LAB3_9PHAE (FHA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAB3_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 8.020e-19
Identity = 47/72 (65.28%), Postives = 52/72 (72.22%), Query Frame = 1 
Query:    1 EDGLGGFFLSDGGQETDFAAAFRIRVGEGNRDWPLTQDCHFSAGLTVFRVHLRKPSTPSPEEGDEEDDPSAA 216
            E G GGFF SDGGQ TDFAAAFRIRVG+GNR+W     CHFSAGLTVFR HL KP++     G+  DD S A
Sbjct:  286 ERGRGGFFFSDGGQGTDFAAAFRIRVGKGNREW--RTGCHFSAGLTVFRAHLTKPTS-----GESNDDDSNA 350
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BLAST of mRNA_L-elsbetiae_contig12013.1713.1 vs. uniprot
Match: D7FNP5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNP5_ECTSI)

HSP 1 Score: 55.1 bits (131), Expect = 6.990e-7
Identity = 25/28 (89.29%), Postives = 26/28 (92.86%), Query Frame = 1 
Query:   28 SDGGQETDFAAAFRIRVGEGNRDWPLTQ 111
            SDGGQ TDFAAAFRIRVGEGNR+W LTQ
Sbjct:  172 SDGGQGTDFAAAFRIRVGEGNREWRLTQ 199
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12013.1713.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LAB3_9PHAE8.020e-1965.28FHA domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FNP5_ECTSI6.990e-789.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12013contigL-elsbetiae_contig12013:1050..2674 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size296
Cds size294
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815403.2391353-CDS-L-elsbetiae_contig12013:1050..12331622815403.2391353-CDS-L-elsbetiae_contig12013:1050..1233Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12013 1051..1233 -
1691682882.3486352-CDS-L-elsbetiae_contig12013:1050..12331691682882.3486352-CDS-L-elsbetiae_contig12013:1050..1233Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12013 1051..1233 -
1622815403.2498932-CDS-L-elsbetiae_contig12013:2563..26741622815403.2498932-CDS-L-elsbetiae_contig12013:2563..2674Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12013 2564..2674 -
1691682882.3577857-CDS-L-elsbetiae_contig12013:2563..26741691682882.3577857-CDS-L-elsbetiae_contig12013:2563..2674Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12013 2564..2674 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12013.1713.1prot_L-elsbetiae_contig12013.1713.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12013 1051..2674 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12013.1713.1

>prot_L-elsbetiae_contig12013.1713.1 ID=prot_L-elsbetiae_contig12013.1713.1|Name=mRNA_L-elsbetiae_contig12013.1713.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=98bp
EDGLGGFFLSDGGQETDFAAAFRIRVGEGNRDWPLTQDCHFSAGLTVFRV
HLRKPSTPSPEEGDEEDDPSAAVVDTAEGESRSGAGAGAGAGADGREA
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mRNA from alignment at L-elsbetiae_contig12013:1050..2674-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12013.1713.1 ID=mRNA_L-elsbetiae_contig12013.1713.1|Name=mRNA_L-elsbetiae_contig12013.1713.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1625bp|location=Sequence derived from alignment at L-elsbetiae_contig12013:1050..2674- (Laminarionema elsbetiae ELsaHSoW15)
GAGGACGGGCTGGGGGGCTTTTTTCTCTCGGATGGCGGCCAGGAGACGGA
TTTCGCGGCAGCGTTCAGAATACGAGTCGGGGAGGGGAACCGCGACTGGC
CTCTGACTCAGGTGGGGTGAGGTGCACGCGCGCGCGCTTGCTGCATGCAT
GTTTGGCTCGGAGGAGCGGCGCGGAGTTCTGTGTTGCGTTGGCGTGTGCC
GGGTTTGGGGGCGTTGGTTGGTTGGTGGTTTGGTGGGGGAAAGACGGTCC
GGGGTGGGTTTGATGGTTGGTTGTTTGGTGAGAACGATGGGTTGATGTGT
GTATGTATGTAGTAGGTTTCGTGGTTCTGTCGCCCATATTTTTTTTTGGG
GGGGGGGGGCTGTAACGCTTTGTGGGTATGGGGTGTGAGAGTAGGCCATG
GTTCGGTTCCTACTCGGCCTGGACTCTGACGTTGCGCCTGCTGTGCTGTG
CCGTAGTGGCATGCGTGTGTCTCGCCGCACGCTCATCCGCCGCTGCTGCT
CCCCGCTGCATCGGTAGACCGAGTGCAGCCATGGTGGGAGCTGGCTGGCT
GGGTGTGCGAGTAAGAGCCACGCGCGGTGCATGGCCTGCGGTTTGTCCGC
ACGGCCGCGGTGGTCCCTCAGGCCCGGCACGCCAGTGGTGGTGGAAACAC
GATGCCTTCGCCTTGACGACCGTTTTTTTGTTCGATACGGCTGTGGCTTT
TTTTGTGGAATAACTTACATCTTCAACGTGCTTGGAGGCGCTGCTATCCC
TGGACAGCAGTAGCAGTGCTGGCTGCTCGTTCGTCTCGTCACTCTCTGCT
TCTCTCGAGCCCTTGTTAGCGAACGCGCAGCTAAACAACCCGGAGTGTAT
GGGGCGAACCTCCTCTCTAGGGGCCCCGTATCCCCTCCTAGGCTAGTAGA
GATGCTATCCCAAATGGCTACTCTCTTCCGTCCCCCCACAAAAACACGCT
TCTATCTTCCTTCCCCGGCAGTGCACCAGAAACCCTCGTCCTTTTTTGTG
GAGTACCGTCGTGCCCGGCAGCTGCAGCGGTCTCGTGTTGTACGGATTAT
CTTGTTGTTGCAGGCAAAGTGTGTCTCGAAGCGTAAGGCGAACCTCTCAA
GCACGTGCACCATGCATGTCCGGCACACAACAGAACCGGGCGATGATGGC
GACGACGACGATGATGATATTGCTGTCGTCTCCTCTTTGCCTTCTCATGT
TGCACTCACTCTATACACAGCTAAACATAGTGTTGTTTTGTAGGCCGGGG
GCCTGTTCGCCGCCAGCAATGAGTTCATGTTCTGCCCCCCCCTTTCCTCT
GCTACGCATCGGCGACTACCACAATAGCAGCACTTTCACCGTGGTGAATG
CGGCGATATCTGACCCGGGGGCTCCGCGTATCGTACTGTCGCAACGACTC
TGCTGCTTTTGCTCTGTTTGCGCGCTTTCTGTTGTGAGCAGGACTGCCAC
TTCAGTGCGGGATTGACTGTGTTTCGAGTGCATCTGAGAAAGCCGTCGAC
ACCAAGCCCAGAAGAGGGGGATGAGGAGGACGACCCCTCTGCTGCGGTAG
TGGACACCGCCGAGGGCGAAAGTCGGTCTGGAGCAGGGGCAGGGGCCGGG
GCGGGAGCAGACGGCAGAGAGGCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12013:1050..2674-

>mRNA_L-elsbetiae_contig12013.1713.1 ID=mRNA_L-elsbetiae_contig12013.1713.1|Name=mRNA_L-elsbetiae_contig12013.1713.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=588bp|location=Sequence derived from alignment at L-elsbetiae_contig12013:1050..2674- (Laminarionema elsbetiae ELsaHSoW15)
GAGGACGGGCTGGGGGGCTTTTTTCTCTCGGATGGCGGCCAGGAGACGGA
TTTCGCGGCAGCGTTCAGAATACGAGTCGGGGAGGGGAACCGCGACTGGC
CTCTGACTCAGGAGGACGGGCTGGGGGGCTTTTTTCTCTCGGATGGCGGC
CAGGAGACGGATTTCGCGGCAGCGTTCAGAATACGAGTCGGGGAGGGGAA
CCGCGACTGGCCTCTGACTCAGGACTGCCACTTCAGTGCGGGATTGACTG
TGTTTCGAGTGCATCTGAGAAAGCCGTCGACACCAAGCCCAGAAGAGGGG
GATGAGGAGGACGACCCCTCTGCTGCGGTAGTGGACACCGCCGAGGGCGA
AAGTCGGTCTGGAGCAGGGGCAGGGGCCGGGGCGGGAGCAGACGGCAGAG
AGGCGGACTGCCACTTCAGTGCGGGATTGACTGTGTTTCGAGTGCATCTG
AGAAAGCCGTCGACACCAAGCCCAGAAGAGGGGGATGAGGAGGACGACCC
CTCTGCTGCGGTAGTGGACACCGCCGAGGGCGAAAGTCGGTCTGGAGCAG
GGGCAGGGGCCGGGGCGGGAGCAGACGGCAGAGAGGCG
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