mRNA_L-elsbetiae_contig12005.1707.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12005.1707.1
Unique NamemRNA_L-elsbetiae_contig12005.1707.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig12005.1707.1 vs. uniprot
Match: A0A6H5KW30_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW30_9PHAE)

HSP 1 Score: 218 bits (554), Expect = 1.580e-66
Identity = 147/264 (55.68%), Postives = 163/264 (61.74%), Query Frame = 2 
Query:   68 MRRILGFCVAALPIAASFTV-----RSGVHPRVPCQQQ---GKDSIMFSGGTRHRTRR-------YAGEG--GPANLDSSDDTPEADAEIYASLRKRLEELEK----SAPIAAEEVEAPPRAPV-----RERE-FTIPRESAEDKKRSRALLTIQSVGVISAALSFGTLALYWLAGAYFVHLGPREYPGSASSRGGASPTPSIERTAVAGDEDRGATSA---QRRALGGSSTREAFRFDGFPDAAG----------KDVVAPDF 739
            MR  +G C AALP   SFT+     RS +     CQ++   G +    S GTR  +         YAGEG  G AN+D SDDT E DAE+YASLRKRLEELE     SAP A EE    P         RERE FTIP+E+ EDK+RS ALLTIQSVGVISAALSFGTLALYWLAGA FVHLGPREYPGS SSRG A   P  ER  V  DE+ GA      Q RA+GGSSTREAF+F+GFPD  G          K VV PDF
Sbjct:    1 MRYAIGLCAAALPFVRSFTMGPAAYRSVIPAAASCQKECSGGSNQQQASYGTRRISXXXXXXXXXYAGEGXXGSANMDPSDDTSEGDAEMYASLRKRLEELENRVETSAPAAQEEQGQEPAVTANNRGAREREWFTIPKEAPEDKRRSLALLTIQSVGVISAALSFGTLALYWLAGAAFVHLGPREYPGSVSSRGSAGTAPGFERIVVGEDENGGAQQVPQTQGRAMGGSSTREAFQFEGFPDVGGGGSXXXXXXXKGVVPPDF 264
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BLAST of mRNA_L-elsbetiae_contig12005.1707.1 vs. uniprot
Match: D7FUI3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUI3_ECTSI)

HSP 1 Score: 202 bits (513), Expect = 2.040e-61
Identity = 125/186 (67.20%), Postives = 136/186 (73.12%), Query Frame = 2 
Query:  245 LDSSDDTPEADAEIYASLRKRLEELEK----SAPIAAEEVEAPPRAP----VRERE-FTIPRESAEDKKRSRALLTIQSVGVISAALSFGTLALYWLAGAYFVHLGPREYPGSASSRGGASPTPSIERTAVAGDEDRGATSA---QRRALGGSSTREAFRFDGFPDAAG---------KDVVAPDF 739
            +D SDDT E DAE+YASLRKRLEELEK    SAP   E+V+ P  A      RERE FTIP+ES EDK+RSRALLTIQSVGVISAALSFGTLALYWLAGA FVHLGPREYPGS SSRGGAS  P IER A   D + GA  A   +RRA+GGSSTREAF+F+GFPD  G         K VV PDF
Sbjct:    1 MDPSDDTSEGDAEMYASLRKRLEELEKQVGTSAPAPQEQVQEPAVAANNKGAREREWFTIPKESPEDKRRSRALLTIQSVGVISAALSFGTLALYWLAGAAFVHLGPREYPGSMSSRGGASTAPGIERIAAGEDGNGGAQQAPQTKRRAMGGSSTREAFQFEGFPDVGGSGGGSGGVGKGVVPPDF 186
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12005.1707.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KW30_9PHAE1.580e-6655.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUI3_ECTSI2.040e-6167.20Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12005contigL-elsbetiae_contig12005:1074..3946 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-21_003820.1
Exons3
Model size897
Cds size675
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12005.1707.1prot_L-elsbetiae_contig12005.1707.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12005 1141..3791 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815402.5388334-UTR-L-elsbetiae_contig12005:1073..11401622815402.5388334-UTR-L-elsbetiae_contig12005:1073..1140Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12005 1074..1140 +
1691682881.946899-UTR-L-elsbetiae_contig12005:1073..11401691682881.946899-UTR-L-elsbetiae_contig12005:1073..1140Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12005 1074..1140 +
1622815402.5929754-UTR-L-elsbetiae_contig12005:3791..39461622815402.5929754-UTR-L-elsbetiae_contig12005:3791..3946Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12005 3792..3946 +
1691682881.982005-UTR-L-elsbetiae_contig12005:3791..39461691682881.982005-UTR-L-elsbetiae_contig12005:3791..3946Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12005 3792..3946 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815402.5558515-CDS-L-elsbetiae_contig12005:1140..14301622815402.5558515-CDS-L-elsbetiae_contig12005:1140..1430Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12005 1141..1430 +
1691682881.9557412-CDS-L-elsbetiae_contig12005:1140..14301691682881.9557412-CDS-L-elsbetiae_contig12005:1140..1430Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12005 1141..1430 +
1622815402.566911-CDS-L-elsbetiae_contig12005:2803..29461622815402.566911-CDS-L-elsbetiae_contig12005:2803..2946Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12005 2804..2946 +
1691682881.9648488-CDS-L-elsbetiae_contig12005:2803..29461691682881.9648488-CDS-L-elsbetiae_contig12005:2803..2946Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12005 2804..2946 +
1622815402.5803866-CDS-L-elsbetiae_contig12005:3549..37911622815402.5803866-CDS-L-elsbetiae_contig12005:3549..3791Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12005 3550..3791 +
1691682881.9742508-CDS-L-elsbetiae_contig12005:3549..37911691682881.9742508-CDS-L-elsbetiae_contig12005:3549..3791Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12005 3550..3791 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12005.1707.1

>prot_L-elsbetiae_contig12005.1707.1 ID=prot_L-elsbetiae_contig12005.1707.1|Name=mRNA_L-elsbetiae_contig12005.1707.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=225bp
MRRILGFCVAALPIAASFTVRSGVHPRVPCQQQGKDSIMFSGGTRHRTRR
YAGEGGPANLDSSDDTPEADAEIYASLRKRLEELEKSAPIAAEEVEAPPR
APVREREFTIPRESAEDKKRSRALLTIQSVGVISAALSFGTLALYWLAGA
YFVHLGPREYPGSASSRGGASPTPSIERTAVAGDEDRGATSAQRRALGGS
STREAFRFDGFPDAAGKDVVAPDF*
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mRNA from alignment at L-elsbetiae_contig12005:1074..3946+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12005.1707.1 ID=mRNA_L-elsbetiae_contig12005.1707.1|Name=mRNA_L-elsbetiae_contig12005.1707.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2873bp|location=Sequence derived from alignment at L-elsbetiae_contig12005:1074..3946+ (Laminarionema elsbetiae ELsaHSoW15)
GCAGCCAGGCAGCTGGCAGCGGCCGTTTCACAGTTTGCTAGAGGCAATAA
CCTTCACCCCCTCGACAATGCGTCGCATTCTTGGCTTCTGCGTTGCGGCA
CTGCCCATTGCGGCATCGTTTACGGTTCGTTCGGGCGTACATCCTCGTGT
GCCTTGTCAGCAACAAGGCAAGGATTCGATCATGTTTAGCGGCGGCACGC
GACACCGCACCCGACGGTACGCCGGCGAGGGCGGGCCTGCCAACTTGGAT
TCTTCGGACGATACTCCTGAGGCGGACGCTGAAATATACGCTTCGTTACG
GAAGCGCTTGGAAGAACTGGAGAAGAGTGCGCCGATTGCTGCGGAGGAAG
TTGAAGCGTGAGTGTTTTGGTGTGTATGTCTTGCGGGGCTGGGCTGCAGG
CTACAGCGGAGCTGGAGACGATCATTCGGCTTACGCAGTGAGCGGCCAGA
TGTGTTCCGCGTGTGTGCGGGTGCGAGTTATGTGGATGAGGGGTAATTTC
AGGCCAATTACTGTGTTTTAAAAAATGCCCCCGCCGATGTTGACACACCG
GTACACACAGCAGCAGTTGATTGAGCTTGCAGCCTCGGAACAAATTCAAA
AATGGCGCTGTTTGTGCACACAGCTTAGTAGTAGCTCGTTCTGGTATGCA
TTGCGGGTATGGATATGAATCCGGTGATTGAGGCAGGGCCCGGTTCTTCG
GCAAACAAAAAACAGTGCTCGTAAGTAAATGAAGGGCGATTGTGTCGTCA
CCACGCGGTCTCATGATGGAAGTGCGGGGAGCGACGAACGAGCTGTCGGG
CGTCTCCTCCTGCCCTCTCCGCTGTCTGTAACGGCAGCTTTACACAGACT
GCGCAGCAGCAGTATCGTCATCCCCTGCAGGACTTGAGGCATGAGGTCCA
CGAGGGTTTGCCTTAGGGCCACGCTATTCAGCGGCGGGGAAAATGTAGAT
ACATGTGTACCAGGTTTTGGTAGATAAAGAGATTTACCAAGGACATCGTT
GTCACGCCCTGCACGTACTACCTACTTCAAGTGATTACATTGAGGGCGCA
CTGCTGTGGGCGTACGAACCAATTGATATGCACGCTGAACAACAATACTC
CCTGAAATCATGCCGAGGGAACCACGAATCCAAGAGCTAAAACGCCGCCC
CATCACTGCAAAAGTGTCATCATTATCGCAGCACTCAGCTCTCTGTGTGG
TTCGTAACTGCTTTTTCGAGCTCAAGAGGTACACACGTATGTACATAGCC
CCGAAATCCATCAAGCCCCCCCCTGAAAGAGTCAAGCTGTGCATGATGGT
CTATGTCGTATGTGGTGACAACAACTCCGTGCAAGTTTATCTTCTACAGC
GAAGATGAATATTTATTTCTTGTCTGCATACCTACCGACATCCAGCCTCA
TAAAACTGTATTTCGCTGATCTGCGAGAAACGAGAGTGTTTTCTGCAGAC
CCCCCCCCCCACACACACACCCCACGTCCCCCCTTGGAAAAGTAAAAACC
GGAGATTGCCCTAATTTCCTCTCACACCGTTTGATAAACTCAACAAAAAG
CAGATAGATGGTCGAGCGCACTGACCGACCAATGCCCCTTGGCCGCCGCC
GCCGCCGCCGCCGCCGCTGCGGCCGCCCTACGCGCTATGTTTCAAACCAA
CAACCCTAACCCTAACCCTCTAACCCTGACAGCAGTGAGTTACGCCGTTG
CTGTATAATATGTGGCCGCTCGCTTCGCAGCCCGCCGAGAGCCCCGGTGC
GGGAGAGGGAATTCACGATACCGAGAGAGTCCGCGGAGGACAAGAAGCGG
TCCCGCGCCCTGCTGACCATCCAGAGCGTCGGCGTTATCTCCGCCGCGCT
GTCCTTCGGGACGTTGGCCCTGTGTAAGTTGTCAGCTTTTTGTTCGCCGT
GTCGGCTAAACATGTACATGATGTTTTGACACAAGTTCAGTAATGTCGAC
ACGGAAACGGTTCAAAGGTGTCTTCCAGAGGGCTGGCTGTGTGTCGTGTC
ATTTGGGGAGGACCACCTTGAGGGCATTTTTCCCCGCTGAATCCTATACG
TTTTTCCCAGAGGGCAACTCTTCAGAGATGGCCCCTCTATGATGCTGCCC
TTTGGAATCTCTTGGTAGGAGGAAGTGGTGCTGGAGGTAGCTCTGTGACC
TTTTTTTTTTGTTGCGTGGCTGGGCATGGGTCTGTCTGCTTGTTCACTGA
CTGGTGTGATTCCACGGCGGTATTGTGCGTGTGTGTGTGGTCTAAACTTG
GTACCATAGTTTTTACCTGCGTGAGATTGCATGGTATGGCAAGCCTGTGG
ATAATCTTCTCTCGGTGGGCGTACGCAGCATCGACGACACGACGAATCCA
AGAGCAGCCGAACAGAGCGAGCAGCCACGGCCTCTCTTTCGCGTTGGCTA
GCTCCACGTACTAATACCCGCTTTCTCCCCCGCCCTCTCTCGCTGTGGGC
TGATCAATTTTCCCTATATATCCCAGACTGGCTAGCGGGGGCATATTTCG
TTCACCTGGGGCCCCGTGAGTACCCGGGATCGGCATCGTCACGGGGGGGC
GCCAGCCCAACGCCGAGTATCGAGAGAACAGCGGTGGCCGGGGACGAGGA
CAGGGGGGCGACGAGCGCCCAGCGGCGGGCGCTGGGGGGGAGTTCAACGC
GCGAGGCGTTTCGATTCGATGGGTTTCCGGACGCGGCGGGGAAGGATGTT
GTCGCGCCGGACTTTTGATCTTGTGTGGGGAGTTTGGTGTGTGGCCTCGA
AAACCCGAGCGCGCTCGCGCCGGTCTAGCGCCGAACATGGGTTTGGGGCC
CACTGGGCTCTGTACTGGTGCCAGTGGCAAGCGATTTCCCGGGAGGTCTA
TGCTGTTGGTACGGAGGGGCGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12005:1074..3946+

>mRNA_L-elsbetiae_contig12005.1707.1 ID=mRNA_L-elsbetiae_contig12005.1707.1|Name=mRNA_L-elsbetiae_contig12005.1707.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1350bp|location=Sequence derived from alignment at L-elsbetiae_contig12005:1074..3946+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGTCGCATTCTTGGCTTCTGCGTTGCGGCACTGCCCATTGCGGCATC
GTTTACGGTTCGTTCGGGCGTACATCCTCGTGTGCCTTGTCAGCAACAAG
GCAAGGATTCGATCATGTTTAGCGGCGGCACGCGACACCGCACCCGACGG
TACGCCGGCGAGGGCGGGCCTGCCAACTTGGATTCTTCGGACGATACTCC
TGAGGCGGACGCTGAAATATACGCTTCGTTACGGAAGCGCTTGGAAGAAC
TGGAGAAGAGTGCGCCGATTGCTGCGGAGGAAGTTGAAGCATGCGTCGCA
TTCTTGGCTTCTGCGTTGCGGCACTGCCCATTGCGGCATCGTTTACGGTT
CGTTCGGGCGTACATCCTCGTGTGCCTTGTCAGCAACAAGGCAAGGATTC
GATCATGTTTAGCGGCGGCACGCGACACCGCACCCGACGGTACGCCGGCG
AGGGCGGGCCTGCCAACTTGGATTCTTCGGACGATACTCCTGAGGCGGAC
GCTGAAATATACGCTTCGTTACGGAAGCGCTTGGAAGAACTGGAGAAGAG
TGCGCCGATTGCTGCGGAGGAAGTTGAAGCCCCGCCGAGAGCCCCGGTGC
GGGAGAGGGAATTCACGATACCGAGAGAGTCCGCGGAGGACAAGAAGCGG
TCCCGCGCCCTGCTGACCATCCAGAGCGTCGGCGTTATCTCCGCCGCGCT
GTCCTTCGGGACGTTGGCCCTGTCCCGCCGAGAGCCCCGGTGCGGGAGAG
GGAATTCACGATACCGAGAGAGTCCGCGGAGGACAAGAAGCGGTCCCGCG
CCCTGCTGACCATCCAGAGCGTCGGCGTTATCTCCGCCGCGCTGTCCTTC
GGGACGTTGGCCCTGTACTGGCTAGCGGGGGCATATTTCGTTCACCTGGG
GCCCCGTGAGTACCCGGGATCGGCATCGTCACGGGGGGGCGCCAGCCCAA
CGCCGAGTATCGAGAGAACAGCGGTGGCCGGGGACGAGGACAGGGGGGCG
ACGAGCGCCCAGCGGCGGGCGCTGGGGGGGAGTTCAACGCGCGAGGCGTT
TCGATTCGATGGGTTTCCGGACGCGGCGGGGAAGGATGTTGTCGCGCCGG
ACTTTTGAACTGGCTAGCGGGGGCATATTTCGTTCACCTGGGGCCCCGTG
AGTACCCGGGATCGGCATCGTCACGGGGGGGCGCCAGCCCAACGCCGAGT
ATCGAGAGAACAGCGGTGGCCGGGGACGAGGACAGGGGGGCGACGAGCGC
CCAGCGGCGGGCGCTGGGGGGGAGTTCAACGCGCGAGGCGTTTCGATTCG
ATGGGTTTCCGGACGCGGCGGGGAAGGATGTTGTCGCGCCGGACTTTTGA
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