mRNA_L-elsbetiae_contig1198.1686.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1198.1686.1
Unique NamemRNA_L-elsbetiae_contig1198.1686.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1198.1686.1 vs. uniprot
Match: D7FNR8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNR8_ECTSI)

HSP 1 Score: 304 bits (778), Expect = 4.030e-92
Identity = 208/336 (61.90%), Postives = 242/336 (72.02%), Query Frame = 2 
Query:  644 MTSPSCLTRRQRSYATAASHNNPHSLDFFSAALVPNHERGALQSSQGGAG--------RSRRRGSPFAALSEAYKPPRAAVFARPRGRDGGEVLGLRSS-NF-AWPKPVEA---LPTDPRHVQRQR-EEAAAAEMEVTSRTKKTVLLPMRKRTDANAVE--SRWVSSXXXXXXXXXXXXXXXXXXXXXXXTAPASPSGHGRSVSWGK---ASVFRFEIDVTQTQSDVYSPDLHAVELAKRLAVIGRDPELRRAASAVENCRRHAASIVRSLTSKQNGGVDGVEDACRVYSWREASFLRETDELVRSIVVGPGEEGVWRLKANYRAARRKMEDACSD 1594
            M+SPS LTRRQRSYA+ ASHNNPHSL+ FSAAL+PNHERG LQ+  G  G        R RRRGSPFAALSEAYKP RA VF+RPR RDGGEVLGLRSS +F AWP+P      LP DPRHVQ++R +  A AE+++ +                       RW   XXXXXXXXXXXXXXXXXXXXXXX+       H +SVSW +    SV RF   V  +Q+DVYSPDL AVE+AK LAV  R+PELRRAA  V+ CRRHAA +VRS+TS QNGG+DGVE+ACR+Y WRE +FLRETDELVRSIVV  GE+ VWRLK+++RAARR+MEDA SD
Sbjct:    1 MSSPSYLTRRQRSYASHASHNNPHSLEPFSAALIPNHERGTLQTFPGAGGGXXXXXXPRGRRRGSPFAALSEAYKPARAPVFSRPRRRDGGEVLGLRSSCSFVAWPRPGGGDGLLPADPRHVQQKRPQRQAGAEVQIITXXXXXXXXXXXXXXXXXXXXXLGRWXXXXXXXXXXXXXXXXXXXXXXXXXXSRS-----HRKSVSWPEDVIRSVHRFP--VAASQADVYSPDLQAVEIAKELAVRARNPELRRAALQVDYCRRHAAQVVRSMTSAQNGGLDGVEEACRLYGWREETFLRETDELVRSIVVEGGEKEVWRLKSSFRAARRRMEDAESD 329
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1198.1686.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FNR8_ECTSI4.030e-9261.90Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1198contigL-elsbetiae_contig1198:7219..9973 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_004510.1
Exons1
Model size2755
Cds size954
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1198.1686.1prot_L-elsbetiae_contig1198.1686.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1198 7862..8815 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815397.4165256-UTR-L-elsbetiae_contig1198:7218..78611622815397.4165256-UTR-L-elsbetiae_contig1198:7218..7861Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1198 7219..7861 +
1691682878.3742738-UTR-L-elsbetiae_contig1198:7218..78611691682878.3742738-UTR-L-elsbetiae_contig1198:7218..7861Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1198 7219..7861 +
1622815397.4356053-UTR-L-elsbetiae_contig1198:8815..99731622815397.4356053-UTR-L-elsbetiae_contig1198:8815..9973Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1198 8816..9973 +
1691682878.3963625-UTR-L-elsbetiae_contig1198:8815..99731691682878.3963625-UTR-L-elsbetiae_contig1198:8815..9973Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1198 8816..9973 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815397.4263213-CDS-L-elsbetiae_contig1198:7861..88151622815397.4263213-CDS-L-elsbetiae_contig1198:7861..8815Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1198 7862..8815 +
1691682878.3844557-CDS-L-elsbetiae_contig1198:7861..88151691682878.3844557-CDS-L-elsbetiae_contig1198:7861..8815Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1198 7862..8815 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1198.1686.1

>prot_L-elsbetiae_contig1198.1686.1 ID=prot_L-elsbetiae_contig1198.1686.1|Name=mRNA_L-elsbetiae_contig1198.1686.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=318bp
MTSPSCLTRRQRSYATAASHNNPHSLDFFSAALVPNHERGALQSSQGGAG
RSRRRGSPFAALSEAYKPPRAAVFARPRGRDGGEVLGLRSSNFAWPKPVE
ALPTDPRHVQRQREEAAAAEMEVTSRTKKTVLLPMRKRTDANAVESRWVS
SSAAAAQDDAVPSAASAAAEEAAATAPASPSGHGRSVSWGKASVFRFEID
VTQTQSDVYSPDLHAVELAKRLAVIGRDPELRRAASAVENCRRHAASIVR
SLTSKQNGGVDGVEDACRVYSWREASFLRETDELVRSIVVGPGEEGVWRL
KANYRAARRKMEDACSD*
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mRNA from alignment at L-elsbetiae_contig1198:7219..9973+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1198.1686.1 ID=mRNA_L-elsbetiae_contig1198.1686.1|Name=mRNA_L-elsbetiae_contig1198.1686.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2755bp|location=Sequence derived from alignment at L-elsbetiae_contig1198:7219..9973+ (Laminarionema elsbetiae ELsaHSoW15)
TAAGAACACGGTAACGACTATGTAGCTCCACAGCAAGGTAGCGTCCATGG
GGATACGCCGGTACGCCGGGTTGATGTTCTCTCTTTTCTCCGGTGACCAG
TCTGCGGGGGATTTTTTTCACTATGACGTGGATTTGAATCCGGCCCTGTC
TTCTGCCATACATCCTGCCCTACATGCCTACACCATCCACGGCAGCTTCT
TCAAGCCTGTAGGTCCTCGAGAACTTTGCCTGTGTCTGCTGGCGAGTGGT
TTCGTGGCTTGTATTTTTTCACAAGCGTGATTTTACATTTGCGGGCCTTT
GCCACAACACAGTAGTCATGCCAGTCACCCCCCCCCGTGTTTCGGCTGGA
ATTGCACCTGTCTTAGCTAGCACCCGACCGCTTGCTTCCCTTGTGCGCGA
CGCCTTTAATATCGCTGGCCCCTCTCCCTTTCTTTCTGCACGCCTTGCTT
ACTCCCCCCCTGCCCTTTTTTCCGTCGCGGTTTCCCCAACACACGTCTTG
TCTCACCAGTTGAGCATCATCATCAGCACAAACGGCGGCCAATTCCTCTA
TAAGAAGGAACGGCCAACAGCTAGCGCAGCAAGCACGCACAACGACAGCA
CCGCAAGCAAGACTTAAGCCACCACCAGTAGCACGCCAAAAGAATGACCT
CGCCTTCGTGCCTCACCCGACGCCAACGGTCGTACGCGACCGCCGCCAGC
CACAACAACCCGCACAGCCTGGATTTCTTTTCCGCCGCCCTCGTGCCCAA
CCACGAGAGAGGCGCGCTGCAAAGCTCTCAAGGCGGTGCGGGACGGAGTC
GGCGGCGCGGTTCGCCGTTCGCCGCTCTCTCTGAAGCCTACAAGCCCCCC
AGGGCGGCTGTCTTCGCTCGTCCCCGCGGCCGCGACGGCGGAGAGGTGTT
GGGGCTGCGGTCGTCGAATTTCGCGTGGCCCAAGCCCGTCGAGGCGCTGC
CGACAGACCCGCGGCATGTCCAGAGACAACGAGAGGAGGCAGCGGCGGCG
GAGATGGAGGTGACTTCCCGCACCAAGAAGACCGTTCTGCTGCCGATGCG
AAAAAGGACGGACGCCAACGCGGTGGAGAGCAGATGGGTTTCGTCCTCGG
CGGCGGCGGCACAAGATGATGCAGTTCCGTCAGCAGCGTCGGCGGCAGCC
GAAGAAGCGGCAGCAACAGCGCCCGCGTCGCCTTCCGGGCACGGCAGGAG
CGTCTCGTGGGGGAAGGCGTCGGTCTTCAGGTTCGAGATCGACGTGACCC
AGACCCAGTCCGACGTCTACTCCCCCGACCTGCACGCGGTAGAGCTTGCC
AAGCGACTCGCGGTGATCGGGAGAGACCCCGAGCTGCGCCGCGCCGCCTC
GGCCGTCGAGAACTGCCGGCGCCACGCCGCCTCGATCGTCAGGTCCCTCA
CGTCCAAGCAGAACGGCGGCGTCGACGGCGTCGAGGACGCCTGCCGCGTG
TACAGCTGGAGGGAGGCGTCGTTCCTGCGGGAGACGGATGAGCTCGTGCG
GTCCATCGTCGTGGGCCCGGGGGAGGAGGGGGTGTGGCGTCTCAAGGCCA
ACTACCGCGCGGCGAGGCGGAAGATGGAGGACGCCTGCTCGGACTAAAAT
AGAGTGGCTGTAGGTGCGCGGGCACGGAGCCTGGAGCGGCGGGGAGGGAG
GCTTTTTTCTTGTGACAAGAGGAGACGTGGGGAATATACACATACATTTT
GACTTGAGTATTGAAGTATGAGTTCACTTGAAATTGAAATCGATCAGCTC
GTTGTCCCCGAGCGAAGTGCGTGGGCAGTCGGCGGTCGAGGGTAGAACGA
AGGTAGGGGAGCAACTAGACTGCTCTCATGATACCACGTAGCCTCGCCCG
TGCGCACAAAGAGTTACTTGTGTAAAATATCGTCAGAAATGTTTTTTGTA
TGTTGTCTGAAGCTGTTTTGTTTTCCCCGTGGGCGTTATCAACGCCTGGT
TGTCAGTTTTTTCGATAATGCCGTGTTGCGTTACATCACAAGCAGCGATC
GCATAATTTTTGCTAGGGAATGCTTTTGCCCCTGGGTCGGATCGTTGGTG
CCATTGATATGTTGCGCTGCGGACCGGACACGTCTGCCACGACAACTCGT
ACCACTACTAACTGCTGTACTCTATGTAAGTGTGTCGTATTTTCTATGTG
CATCTTGTGTTCGTCTGCGTTTGGTGAGGTGTAATGGCAAGATTTTGGGG
GATGATATGGAGGCAACCCGGCCGTACTGGTCGATACCTAGCTGTATTGG
GTGTGCGGTACGCGGCATATATAATATATATATATATAAGAGTATCACAC
AAGCTGTGTTCAGTTGTTTTAAGGGCCGGCATTTACCATCGGGAGCAAAA
ACGAATTCGTAATTTTGTTCCGAGTCGCGTGAATAGATACAAGCCGGGTA
GAAGTAGAGGTGTTGTTACTTTGCACTTGTTGTCGAGGACGAGAGAGAGG
GAGAGAGAGAGAGAGGAGAGAGAGCGCGCAAAGCGATGGTGTTGCATTTT
GGAGAACGGTGATGATGTCGCGTCGCCCTGGATATAGAGAAGCGAAAAAT
AATAAACGGATTTCAATAATGCAGACGAGTCTTGTACTCTTCCTTCATAC
CAGACAGTTTCGGTTACCCTTCTGTTTTGTGGTTTCGGCGTTGTTTCTGC
TGTTGCCCGTGCAACGTTGGGAGCAAACAGGAAGAACGGGACGCGCGTGA
GGCGACCAAAAACTGAAAACGAATTCTTTCTTTTTTCTTCGTTTTAGTGG
ACGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1198:7219..9973+

>mRNA_L-elsbetiae_contig1198.1686.1 ID=mRNA_L-elsbetiae_contig1198.1686.1|Name=mRNA_L-elsbetiae_contig1198.1686.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1908bp|location=Sequence derived from alignment at L-elsbetiae_contig1198:7219..9973+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACCTCGCCTTCGTGCCTCACCCGACGCCAACGGTCGTACGCGACCGC
CGCCAGCCACAACAACCCGCACAGCCTGGATTTCTTTTCCGCCGCCCTCG
TGCCCAACCACGAGAGAGGCGCGCTGCAAAGCTCTCAAGGCGGTGCGGGA
CGGAGTCGGCGGCGCGGTTCGCCGTTCGCCGCTCTCTCTGAAGCCTACAA
GCCCCCCAGGGCGGCTGTCTTCGCTCGTCCCCGCGGCCGCGACGGCGGAG
AGGTGTTGGGGCTGCGGTCGTCGAATTTCGCGTGGCCCAAGCCCGTCGAG
GCGCTGCCGACAGACCCGCGGCATGTCCAGAGACAACGAGAGGAGGCAGC
GGCGGCGGAGATGGAGGTGACTTCCCGCACCAAGAAGACCGTTCTGCTGC
CGATGCGAAAAAGGACGGACGCCAACGCGGTGGAGAGCAGATGGGTTTCG
TCCTCGGCGGCGGCGGCACAAGATGATGCAGTTCCGTCAGCAGCGTCGGC
GGCAGCCGAAGAAGCGGCAGCAACAGCGCCCGCGTCGCCTTCCGGGCACG
GCAGGAGCGTCTCGTGGGGGAAGGCGTCGGTCTTCAGGTTCGAGATCGAC
GTGACCCAGACCCAGTCCGACGTCTACTCCCCCGACCTGCACGCGGTAGA
GCTTGCCAAGCGACTCGCGGTGATCGGGAGAGACCCCGAGCTGCGCCGCG
CCGCCTCGGCCGTCGAGAACTGCCGGCGCCACGCCGCCTCGATCGTCAGG
TCCCTCACGTCCAAGCAGAACGGCGGCGTCGACGGCGTCGAGGACGCCTG
CCGCGTGTACAGCTGGAGGGAGGCGTCGTTCCTGCGGGAGACGGATGAGC
TCGTGCGGTCCATCGTCGTGGGCCCGGGGGAGGAGGGGGTGTGGCGTCTC
AAGGCCAACTACCGCGCGGCGAGGCGGAAGATGGAGGACGCCTGCTCGGA
CTAAATGACCTCGCCTTCGTGCCTCACCCGACGCCAACGGTCGTACGCGA
CCGCCGCCAGCCACAACAACCCGCACAGCCTGGATTTCTTTTCCGCCGCC
CTCGTGCCCAACCACGAGAGAGGCGCGCTGCAAAGCTCTCAAGGCGGTGC
GGGACGGAGTCGGCGGCGCGGTTCGCCGTTCGCCGCTCTCTCTGAAGCCT
ACAAGCCCCCCAGGGCGGCTGTCTTCGCTCGTCCCCGCGGCCGCGACGGC
GGAGAGGTGTTGGGGCTGCGGTCGTCGAATTTCGCGTGGCCCAAGCCCGT
CGAGGCGCTGCCGACAGACCCGCGGCATGTCCAGAGACAACGAGAGGAGG
CAGCGGCGGCGGAGATGGAGGTGACTTCCCGCACCAAGAAGACCGTTCTG
CTGCCGATGCGAAAAAGGACGGACGCCAACGCGGTGGAGAGCAGATGGGT
TTCGTCCTCGGCGGCGGCGGCACAAGATGATGCAGTTCCGTCAGCAGCGT
CGGCGGCAGCCGAAGAAGCGGCAGCAACAGCGCCCGCGTCGCCTTCCGGG
CACGGCAGGAGCGTCTCGTGGGGGAAGGCGTCGGTCTTCAGGTTCGAGAT
CGACGTGACCCAGACCCAGTCCGACGTCTACTCCCCCGACCTGCACGCGG
TAGAGCTTGCCAAGCGACTCGCGGTGATCGGGAGAGACCCCGAGCTGCGC
CGCGCCGCCTCGGCCGTCGAGAACTGCCGGCGCCACGCCGCCTCGATCGT
CAGGTCCCTCACGTCCAAGCAGAACGGCGGCGTCGACGGCGTCGAGGACG
CCTGCCGCGTGTACAGCTGGAGGGAGGCGTCGTTCCTGCGGGAGACGGAT
GAGCTCGTGCGGTCCATCGTCGTGGGCCCGGGGGAGGAGGGGGTGTGGCG
TCTCAAGGCCAACTACCGCGCGGCGAGGCGGAAGATGGAGGACGCCTGCT
CGGACTAA
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