mRNA_L-elsbetiae_contig11979.1683.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11979.1683.1
Unique NamemRNA_L-elsbetiae_contig11979.1683.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11979.1683.1 vs. uniprot
Match: D8LKW1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKW1_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 5.230e-10
Identity = 30/48 (62.50%), Postives = 37/48 (77.08%), Query Frame = 3 
Query:   39 QKEAAIRDDYLQSRSTGEK------HIGTGGMADTRDPAPVNHADPRK 164
            QK+A++ DDY+ ++S+G        H GTGGMADTRDPAPVNHADPRK
Sbjct:  314 QKQASMFDDYMSTQSSGSSSKTAPGHKGTGGMADTRDPAPVNHADPRK 361
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BLAST of mRNA_L-elsbetiae_contig11979.1683.1 vs. uniprot
Match: A0A835YTB4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTB4_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 6.220e-6
Identity = 21/29 (72.41%), Postives = 23/29 (79.31%), Query Frame = 3 
Query:   78 RSTGEKHIGTGGMADTRDPAPVNHADPRK 164
            R+  EKH G GGMADTRDP PV+H DPRK
Sbjct:   31 RAEDEKHRGVGGMADTRDPEPVDHEDPRK 59
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BLAST of mRNA_L-elsbetiae_contig11979.1683.1 vs. uniprot
Match: A0A835YLE0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLE0_9STRA)

HSP 1 Score: 47.4 bits (111), Expect = 1.250e-5
Identity = 21/28 (75.00%), Postives = 22/28 (78.57%), Query Frame = 3 
Query:   81 STGEKHIGTGGMADTRDPAPVNHADPRK 164
            S  EKH G GGMADTRDP PV+H DPRK
Sbjct:   30 SAEEKHRGVGGMADTRDPEPVDHEDPRK 57
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BLAST of mRNA_L-elsbetiae_contig11979.1683.1 vs. uniprot
Match: D7G2R1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2R1_ECTSI)

HSP 1 Score: 48.9 bits (115), Expect = 2.210e-5
Identity = 21/26 (80.77%), Postives = 23/26 (88.46%), Query Frame = 3 
Query:   87 GEKHIGTGGMADTRDPAPVNHADPRK 164
            GEKHIGTGGMADTRDP  ++H DPRK
Sbjct:  167 GEKHIGTGGMADTRDPDALDHEDPRK 192
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11979.1683.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LKW1_ECTSI5.230e-1062.50Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YTB4_9STRA6.220e-672.41Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YLE0_9STRA1.250e-575.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7G2R1_ECTSI2.210e-580.77Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11979contigL-elsbetiae_contig11979:1557..3200 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-11_005770.1
Exons2
Model size166
Cds size138
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11979.1683.1prot_L-elsbetiae_contig11979.1683.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11979 1583..3200 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815397.2143173-UTR-L-elsbetiae_contig11979:1556..15821622815397.2143173-UTR-L-elsbetiae_contig11979:1556..1582Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11979 1557..1582 +
1691682878.2911968-UTR-L-elsbetiae_contig11979:1556..15821691682878.2911968-UTR-L-elsbetiae_contig11979:1556..1582Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11979 1557..1582 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815397.2242472-CDS-L-elsbetiae_contig11979:1582..16391622815397.2242472-CDS-L-elsbetiae_contig11979:1582..1639Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11979 1583..1639 +
1691682878.3004184-CDS-L-elsbetiae_contig11979:1582..16391691682878.3004184-CDS-L-elsbetiae_contig11979:1582..1639Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11979 1583..1639 +
1622815397.2381182-CDS-L-elsbetiae_contig11979:3119..32001622815397.2381182-CDS-L-elsbetiae_contig11979:3119..3200Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11979 3120..3200 +
1691682878.3093817-CDS-L-elsbetiae_contig11979:3119..32001691682878.3093817-CDS-L-elsbetiae_contig11979:3119..3200Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11979 3120..3200 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11979.1683.1

>prot_L-elsbetiae_contig11979.1683.1 ID=prot_L-elsbetiae_contig11979.1683.1|Name=mRNA_L-elsbetiae_contig11979.1683.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=46bp
MPPAQKEAAIRDDYLQSRSTGEKHIGTGGMADTRDPAPVNHADPRK
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mRNA from alignment at L-elsbetiae_contig11979:1557..3200+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11979.1683.1 ID=mRNA_L-elsbetiae_contig11979.1683.1|Name=mRNA_L-elsbetiae_contig11979.1683.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1644bp|location=Sequence derived from alignment at L-elsbetiae_contig11979:1557..3200+ (Laminarionema elsbetiae ELsaHSoW15)
CCCAGAGAGAGGCCGCTGAGGCCGCCATGCCCCCGGCGCAAAAGGAGGCC
GCCATCCGCGACGACTACCTGCAGTCCAGGTCAGTGAGGACAAGCGGCAG
ACAGACAACCCAGAGCGGCGGCCGGGGGGTTGGGGGGGGGGGGGGGGGGG
GAAGCAGGAGGGAGGGGGAGGCCCCCCCCATGGGGGGTGTGTTTGTTTTG
NNNNNNNNNNGCGGGGGGGAGCAGGGGGGGGAGCGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCAGCAAGCAGTA
TGTACGGATGAGCGCTCCCCTGCATGGTAGCTTTTGGTTTCGCGTAGCGT
TCGTTGTTGCCTCCTCGGCTTGGCCTGCTTTGGCCATTACTGCTGCTACT
GCTGCTGCTGCTGCTGCTGTGTTTTTGCTCTATTTTTATTTCGGTTTTCG
GTTGCCATCTGGTTAGTTTGCCGCTGGGCCTGGTCCAAGGACGTTTCCCC
CCGATTCAAGTCCCAGAGGGTCATAGGCTTCCTGCAGGGGCCCCCACATC
TGAAAAAGCGGCCCCGTGGGGGATTTTTCACTCTATTTCCTAGATAAATA
CCCCCACAGCTCTTTTTGAGAATTGGGGGCTGGCTCTATTGCGGGAAGCC
TATCAAGTCACCATATGGAGGGCGTGTGCTCATGCCTTGAACAGATTGGC
GAGGCCCCCCCTCCCTCATCATGTGTGGTTTGATACGGAGTACTCTTGTG
TATGCATATTATATTTTCATCGCCAACCCACAGGAGGACAAAAAAACAGT
GTTGGTGTTTTTGTTGCACGACATGGCTGAGCTCGTTCCCTCGATTCCCC
TCGTTGCTCTCCCTTCGTCGCGTTCTTGCTTCTTTGTGTTCCTCGCCGGG
GTATCGTCACGGAACCCCTTTCTTTCTCTCTTTCGTTCTGCGGCGGCGGC
ACCCATGGATCAACAACAGCGCGGTGAGAGAGATTTGTCAAGTGTGTGCG
TGTGTGTGTGTGTGTTGAGCTTTACAATAGAATGAATTTAACAACGAGCT
GGCCCGCATTAATCGTTGGTGTTGTTGGTGTGCGGAGAGAGAGGGCGTTA
CCGCTGTAGCATGCATGCATGTACATGCCCATCCGATTGATGGTTGCGGA
GAGCTTTTTCTAATGTCGAAGTGTTCTTTCTATGCCGATGATAAGGCGAG
AAGGGTTTTCTGTCTGTCTGTGCCGGGGGATGGATGCATGACCAACATCG
CGAAGCACTGGTAAATCGCACCGACTTGTAGATATCACCAACAGCTTGCC
CGGTCCCGCTTCCGAGCAGACCAGGATACACACGCATCACTAGACGCCCG
ACCCAAGCTCTCCGTTTAACTGTTACATACAACGCACATATATGCGCGCA
CCCTCGTCGCTTGCAACGCCGCTTCGCTGCTGCTGGCTCTGTACTCACGC
GACCGGCTTTTGTTTCCCCCTTCTCCCTGCTGCTTGCTGCTGTGTATGGC
GCGCGTGATTTGTGTGTGTGTTGGGTGTTTTTTTTTCGTTCGTGCTGTTG
CCGGCAGAAGAAGACGGGGGAGAAGCACATCGGAACCGGCGGCATGGCCG
ACACCCGCGACCCCGCGCCGGTGAACCACGCGGACCCCCGCAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11979:1557..3200+

>mRNA_L-elsbetiae_contig11979.1683.1 ID=mRNA_L-elsbetiae_contig11979.1683.1|Name=mRNA_L-elsbetiae_contig11979.1683.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=276bp|location=Sequence derived from alignment at L-elsbetiae_contig11979:1557..3200+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCCCCGGCGCAAAAGGAGGCCGCCATCCGCGACGACTACCTGCAGTC
CAGGTCAATGCCCCCGGCGCAAAAGGAGGCCGCCATCCGCGACGACTACC
TGCAGTCCAGGTCAACGGGGGAGAAGCACATCGGAACCGGCGGCATGGCC
GACACCCGCGACCCCGCGCCGGTGAACCACGCGGACCCCCGCAAGACGGG
GGAGAAGCACATCGGAACCGGCGGCATGGCCGACACCCGCGACCCCGCGC
CGGTGAACCACGCGGACCCCCGCAAG
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