mRNA_L-elsbetiae_contig11949.1659.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig11949.1659.1 vs. uniprot
Match: A0A1R3TMQ6_9HYPH (Uncharacterized protein n=1 Tax=Agrobacterium rosae TaxID=1972867 RepID=A0A1R3TMQ6_9HYPH) HSP 1 Score: 62.4 bits (150), Expect = 1.790e-10 Identity = 24/34 (70.59%), Postives = 29/34 (85.29%), Query Frame = 1 Query: 1 CALRAWRRPTLPRLETQYHWRWGVSLPSSGWDRV 102 C L+ W+RPTLPRL+T+YHWRWGVS P S W+RV Sbjct: 108 CDLQTWQRPTLPRLKTEYHWRWGVSRPCSEWERV 141
BLAST of mRNA_L-elsbetiae_contig11949.1659.1 vs. uniprot
Match: G7ZHN0_AZOL4 (Uncharacterized protein n=1 Tax=Azospirillum lipoferum (strain 4B) TaxID=862719 RepID=G7ZHN0_AZOL4) HSP 1 Score: 58.9 bits (141), Expect = 2.010e-10 Identity = 27/34 (79.41%), Postives = 28/34 (82.35%), Query Frame = -2 Query: 3 NTRSHPELGSETPQRQWYCVSRRGRVGRRQARKA 104 NTRSHPELG E P RQWYCV RRGRVGRRQ +A Sbjct: 3 NTRSHPELGREKPPRQWYCVLRRGRVGRRQVTQA 36
BLAST of mRNA_L-elsbetiae_contig11949.1659.1 vs. uniprot
Match: A0A6A5L269_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5L269_LUPAL) HSP 1 Score: 63.2 bits (152), Expect = 2.780e-10 Identity = 30/47 (63.83%), Postives = 33/47 (70.21%), Query Frame = 2 Query: 2 ALCGPGGDRLSHVLRRSTIGAGAFHFRVRDGIGCLGPRNGHQAGRAQ 142 ALCG GGDRLS LR ST+GAG F+ RVRDGIG R+ HQ G Q Sbjct: 25 ALCGSGGDRLSRALRHSTMGAGVFNGRVRDGIGFWARRSSHQTGATQ 71
BLAST of mRNA_L-elsbetiae_contig11949.1659.1 vs. uniprot
Match: H6SL68_PARPM (Phosphoenolpyruvate carboxylase n=2 Tax=Pararhodospirillum photometricum TaxID=1084 RepID=H6SL68_PARPM) HSP 1 Score: 62.4 bits (150), Expect = 5.220e-10 Identity = 30/34 (88.24%), Postives = 30/34 (88.24%), Query Frame = -2 Query: 3 NTRSHPELGSETPQRQWYCVSRRGRVGRRQARKA 104 NTRSHPELG ET QRQWYCV RRGRVGRRQA KA Sbjct: 10 NTRSHPELGRETVQRQWYCVLRRGRVGRRQAFKA 43
BLAST of mRNA_L-elsbetiae_contig11949.1659.1 vs. uniprot
Match: A0A1R3U3M8_9HYPH (Uncharacterized protein n=1 Tax=Agrobacterium rosae TaxID=1972867 RepID=A0A1R3U3M8_9HYPH) HSP 1 Score: 58.2 bits (139), Expect = 8.540e-9 Identity = 27/37 (72.97%), Postives = 29/37 (78.38%), Query Frame = 2 Query: 2 ALCGPGGDRLSHVLRRSTIGAGAFHFRVRDGIGCLGP 112 A+C PG D LS VLRRSTIGAGAFH RVR+G GC P Sbjct: 160 AICRPGSDLLSRVLRRSTIGAGAFHGRVRNGNGCSRP 196
BLAST of mRNA_L-elsbetiae_contig11949.1659.1 vs. uniprot
Match: A0A8J4V5I2_9ROSI (Uncharacterized protein n=1 Tax=Castanea mollissima TaxID=60419 RepID=A0A8J4V5I2_9ROSI) HSP 1 Score: 56.2 bits (134), Expect = 4.390e-8 Identity = 27/42 (64.29%), Postives = 30/42 (71.43%), Query Frame = 2 Query: 17 GGDRLSHVLRRSTIGAGAFHFRVRDGIGCLGPRNGHQAGRAQ 142 GGDRLS LR ST+GAGAF+ RVRDGIG R+ HQ G Q Sbjct: 2 GGDRLSRALRHSTMGAGAFNGRVRDGIGFWARRSSHQTGATQ 43
BLAST of mRNA_L-elsbetiae_contig11949.1659.1 vs. uniprot
Match: E0XV84_9RHOB (Uncharacterized protein n=1 Tax=uncultured Rhodobacterales bacterium HF4000_03E16 TaxID=710785 RepID=E0XV84_9RHOB) HSP 1 Score: 52.0 bits (123), Expect = 2.970e-7 Identity = 25/34 (73.53%), Postives = 28/34 (82.35%), Query Frame = -1 Query: 4 KHPIPSRTRK*NAPAPMVLRLKTWESRSPPGPQS 105 KHP+PSRTR +A APMVLRLKTWESRS P +S Sbjct: 57 KHPVPSRTRPLSAVAPMVLRLKTWESRSSPNLKS 90
BLAST of mRNA_L-elsbetiae_contig11949.1659.1 vs. uniprot
Match: A0A6A5L8T1_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5L8T1_LUPAL) HSP 1 Score: 53.5 bits (127), Expect = 5.750e-7 Identity = 26/37 (70.27%), Postives = 27/37 (72.97%), Query Frame = 2 Query: 2 ALCGPGGDRLSHVLRRSTIGAGAFHFRVRDGIGCLGP 112 A PG D LS VLRRSTIGAGAFH RVR+G GC P Sbjct: 151 AFSRPGSDLLSRVLRRSTIGAGAFHGRVRNGNGCSRP 187
BLAST of mRNA_L-elsbetiae_contig11949.1659.1 vs. uniprot
Match: Q3BKH7_9PROT (Uncharacterized protein n=1 Tax=Magnetospirillum gryphiswaldense TaxID=55518 RepID=Q3BKH7_9PROT) HSP 1 Score: 48.1 bits (113), Expect = 3.560e-6 Identity = 22/29 (75.86%), Postives = 22/29 (75.86%), Query Frame = 2 Query: 14 PGGDRLSHVLRRSTIGAGAFHFRVRDGIG 100 PG D LS LR STIGAG FH RVRDGIG Sbjct: 11 PGSDLLSRALRHSTIGAGDFHVRVRDGIG 39
BLAST of mRNA_L-elsbetiae_contig11949.1659.1 vs. uniprot
Match: W4SHK0_9XANT (Uncharacterized protein (Fragment) n=1 Tax=Xanthomonas arboricola pv. pruni MAFF 301420 TaxID=1418095 RepID=W4SHK0_9XANT) HSP 1 Score: 48.9 bits (115), Expect = 4.130e-6 Identity = 22/29 (75.86%), Postives = 23/29 (79.31%), Query Frame = 2 Query: 14 PGGDRLSHVLRRSTIGAGAFHFRVRDGIG 100 PG D LSH L +TIGA AFHFRVRDGIG Sbjct: 44 PGDDLLSHGLSHTTIGAAAFHFRVRDGIG 72 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11949.1659.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig11949.1659.1 >prot_L-elsbetiae_contig11949.1659.1 ID=prot_L-elsbetiae_contig11949.1659.1|Name=mRNA_L-elsbetiae_contig11949.1659.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=54bp CALRAWRRPTLPRLETQYHWRWGVSLPSSGWDRVFGSPQWPPGRQSAKIVback to top mRNA from alignment at L-elsbetiae_contig11949:68..229+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig11949.1659.1 ID=mRNA_L-elsbetiae_contig11949.1659.1|Name=mRNA_L-elsbetiae_contig11949.1659.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=162bp|location=Sequence derived from alignment at L-elsbetiae_contig11949:68..229+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig11949:68..229+ >mRNA_L-elsbetiae_contig11949.1659.1 ID=mRNA_L-elsbetiae_contig11949.1659.1|Name=mRNA_L-elsbetiae_contig11949.1659.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=324bp|location=Sequence derived from alignment at L-elsbetiae_contig11949:68..229+ (Laminarionema elsbetiae ELsaHSoW15)back to top |