mRNA_L-elsbetiae_contig11949.1659.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11949.1659.1
Unique NamemRNA_L-elsbetiae_contig11949.1659.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig11949.1659.1 vs. uniprot
Match: A0A1R3TMQ6_9HYPH (Uncharacterized protein n=1 Tax=Agrobacterium rosae TaxID=1972867 RepID=A0A1R3TMQ6_9HYPH)

HSP 1 Score: 62.4 bits (150), Expect = 1.790e-10
Identity = 24/34 (70.59%), Postives = 29/34 (85.29%), Query Frame = 1
Query:    1 CALRAWRRPTLPRLETQYHWRWGVSLPSSGWDRV 102
            C L+ W+RPTLPRL+T+YHWRWGVS P S W+RV
Sbjct:  108 CDLQTWQRPTLPRLKTEYHWRWGVSRPCSEWERV 141          
BLAST of mRNA_L-elsbetiae_contig11949.1659.1 vs. uniprot
Match: G7ZHN0_AZOL4 (Uncharacterized protein n=1 Tax=Azospirillum lipoferum (strain 4B) TaxID=862719 RepID=G7ZHN0_AZOL4)

HSP 1 Score: 58.9 bits (141), Expect = 2.010e-10
Identity = 27/34 (79.41%), Postives = 28/34 (82.35%), Query Frame = -2
Query:    3 NTRSHPELGSETPQRQWYCVSRRGRVGRRQARKA 104
            NTRSHPELG E P RQWYCV RRGRVGRRQ  +A
Sbjct:    3 NTRSHPELGREKPPRQWYCVLRRGRVGRRQVTQA 36          
BLAST of mRNA_L-elsbetiae_contig11949.1659.1 vs. uniprot
Match: A0A6A5L269_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5L269_LUPAL)

HSP 1 Score: 63.2 bits (152), Expect = 2.780e-10
Identity = 30/47 (63.83%), Postives = 33/47 (70.21%), Query Frame = 2
Query:    2 ALCGPGGDRLSHVLRRSTIGAGAFHFRVRDGIGCLGPRNGHQAGRAQ 142
            ALCG GGDRLS  LR ST+GAG F+ RVRDGIG    R+ HQ G  Q
Sbjct:   25 ALCGSGGDRLSRALRHSTMGAGVFNGRVRDGIGFWARRSSHQTGATQ 71          
BLAST of mRNA_L-elsbetiae_contig11949.1659.1 vs. uniprot
Match: H6SL68_PARPM (Phosphoenolpyruvate carboxylase n=2 Tax=Pararhodospirillum photometricum TaxID=1084 RepID=H6SL68_PARPM)

HSP 1 Score: 62.4 bits (150), Expect = 5.220e-10
Identity = 30/34 (88.24%), Postives = 30/34 (88.24%), Query Frame = -2
Query:    3 NTRSHPELGSETPQRQWYCVSRRGRVGRRQARKA 104
            NTRSHPELG ET QRQWYCV RRGRVGRRQA KA
Sbjct:   10 NTRSHPELGRETVQRQWYCVLRRGRVGRRQAFKA 43          
BLAST of mRNA_L-elsbetiae_contig11949.1659.1 vs. uniprot
Match: A0A1R3U3M8_9HYPH (Uncharacterized protein n=1 Tax=Agrobacterium rosae TaxID=1972867 RepID=A0A1R3U3M8_9HYPH)

HSP 1 Score: 58.2 bits (139), Expect = 8.540e-9
Identity = 27/37 (72.97%), Postives = 29/37 (78.38%), Query Frame = 2
Query:    2 ALCGPGGDRLSHVLRRSTIGAGAFHFRVRDGIGCLGP 112
            A+C PG D LS VLRRSTIGAGAFH RVR+G GC  P
Sbjct:  160 AICRPGSDLLSRVLRRSTIGAGAFHGRVRNGNGCSRP 196          
BLAST of mRNA_L-elsbetiae_contig11949.1659.1 vs. uniprot
Match: A0A8J4V5I2_9ROSI (Uncharacterized protein n=1 Tax=Castanea mollissima TaxID=60419 RepID=A0A8J4V5I2_9ROSI)

HSP 1 Score: 56.2 bits (134), Expect = 4.390e-8
Identity = 27/42 (64.29%), Postives = 30/42 (71.43%), Query Frame = 2
Query:   17 GGDRLSHVLRRSTIGAGAFHFRVRDGIGCLGPRNGHQAGRAQ 142
            GGDRLS  LR ST+GAGAF+ RVRDGIG    R+ HQ G  Q
Sbjct:    2 GGDRLSRALRHSTMGAGAFNGRVRDGIGFWARRSSHQTGATQ 43          
BLAST of mRNA_L-elsbetiae_contig11949.1659.1 vs. uniprot
Match: E0XV84_9RHOB (Uncharacterized protein n=1 Tax=uncultured Rhodobacterales bacterium HF4000_03E16 TaxID=710785 RepID=E0XV84_9RHOB)

HSP 1 Score: 52.0 bits (123), Expect = 2.970e-7
Identity = 25/34 (73.53%), Postives = 28/34 (82.35%), Query Frame = -1
Query:    4 KHPIPSRTRK*NAPAPMVLRLKTWESRSPPGPQS 105
            KHP+PSRTR  +A APMVLRLKTWESRS P  +S
Sbjct:   57 KHPVPSRTRPLSAVAPMVLRLKTWESRSSPNLKS 90          
BLAST of mRNA_L-elsbetiae_contig11949.1659.1 vs. uniprot
Match: A0A6A5L8T1_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5L8T1_LUPAL)

HSP 1 Score: 53.5 bits (127), Expect = 5.750e-7
Identity = 26/37 (70.27%), Postives = 27/37 (72.97%), Query Frame = 2
Query:    2 ALCGPGGDRLSHVLRRSTIGAGAFHFRVRDGIGCLGP 112
            A   PG D LS VLRRSTIGAGAFH RVR+G GC  P
Sbjct:  151 AFSRPGSDLLSRVLRRSTIGAGAFHGRVRNGNGCSRP 187          
BLAST of mRNA_L-elsbetiae_contig11949.1659.1 vs. uniprot
Match: Q3BKH7_9PROT (Uncharacterized protein n=1 Tax=Magnetospirillum gryphiswaldense TaxID=55518 RepID=Q3BKH7_9PROT)

HSP 1 Score: 48.1 bits (113), Expect = 3.560e-6
Identity = 22/29 (75.86%), Postives = 22/29 (75.86%), Query Frame = 2
Query:   14 PGGDRLSHVLRRSTIGAGAFHFRVRDGIG 100
            PG D LS  LR STIGAG FH RVRDGIG
Sbjct:   11 PGSDLLSRALRHSTIGAGDFHVRVRDGIG 39          
BLAST of mRNA_L-elsbetiae_contig11949.1659.1 vs. uniprot
Match: W4SHK0_9XANT (Uncharacterized protein (Fragment) n=1 Tax=Xanthomonas arboricola pv. pruni MAFF 301420 TaxID=1418095 RepID=W4SHK0_9XANT)

HSP 1 Score: 48.9 bits (115), Expect = 4.130e-6
Identity = 22/29 (75.86%), Postives = 23/29 (79.31%), Query Frame = 2
Query:   14 PGGDRLSHVLRRSTIGAGAFHFRVRDGIG 100
            PG D LSH L  +TIGA AFHFRVRDGIG
Sbjct:   44 PGDDLLSHGLSHTTIGAAAFHFRVRDGIG 72          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11949.1659.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A1R3TMQ6_9HYPH1.790e-1070.59Uncharacterized protein n=1 Tax=Agrobacterium rosa... [more]
G7ZHN0_AZOL42.010e-1079.41Uncharacterized protein n=1 Tax=Azospirillum lipof... [more]
A0A6A5L269_LUPAL2.780e-1063.83Uncharacterized protein n=1 Tax=Lupinus albus TaxI... [more]
H6SL68_PARPM5.220e-1088.24Phosphoenolpyruvate carboxylase n=2 Tax=Pararhodos... [more]
A0A1R3U3M8_9HYPH8.540e-972.97Uncharacterized protein n=1 Tax=Agrobacterium rosa... [more]
A0A8J4V5I2_9ROSI4.390e-864.29Uncharacterized protein n=1 Tax=Castanea mollissim... [more]
E0XV84_9RHOB2.970e-773.53Uncharacterized protein n=1 Tax=uncultured Rhodoba... [more]
A0A6A5L8T1_LUPAL5.750e-770.27Uncharacterized protein n=1 Tax=Lupinus albus TaxI... [more]
Q3BKH7_9PROT3.560e-675.86Uncharacterized protein n=1 Tax=Magnetospirillum g... [more]
W4SHK0_9XANT4.130e-675.86Uncharacterized protein (Fragment) n=1 Tax=Xanthom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11949contigL-elsbetiae_contig11949:68..229 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size162
Cds size162
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815395.04463-CDS-L-elsbetiae_contig11949:67..2291622815395.04463-CDS-L-elsbetiae_contig11949:67..229Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11949 68..229 +
1691682877.0151305-CDS-L-elsbetiae_contig11949:67..2291691682877.0151305-CDS-L-elsbetiae_contig11949:67..229Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11949 68..229 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11949.1659.1prot_L-elsbetiae_contig11949.1659.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11949 68..229 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11949.1659.1

>prot_L-elsbetiae_contig11949.1659.1 ID=prot_L-elsbetiae_contig11949.1659.1|Name=mRNA_L-elsbetiae_contig11949.1659.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=54bp
CALRAWRRPTLPRLETQYHWRWGVSLPSSGWDRVFGSPQWPPGRQSAKIV
NWS*
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mRNA from alignment at L-elsbetiae_contig11949:68..229+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11949.1659.1 ID=mRNA_L-elsbetiae_contig11949.1659.1|Name=mRNA_L-elsbetiae_contig11949.1659.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=162bp|location=Sequence derived from alignment at L-elsbetiae_contig11949:68..229+ (Laminarionema elsbetiae ELsaHSoW15)
TGCGCTTTGCGGGCCTGGCGGCGACCGACTCTCCCACGTCTTGAGACGCA GTACCATTGGCGCTGGGGCGTTTCACTTCCGAGTTCGGGATGGGATCGGG TGTTTGGGTCCCCGCAATGGCCACCAGGCCGGCAGAGCGCAAAAATTGTG AACTGGTCTTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11949:68..229+

>mRNA_L-elsbetiae_contig11949.1659.1 ID=mRNA_L-elsbetiae_contig11949.1659.1|Name=mRNA_L-elsbetiae_contig11949.1659.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=324bp|location=Sequence derived from alignment at L-elsbetiae_contig11949:68..229+ (Laminarionema elsbetiae ELsaHSoW15)
TGCGCTTTGCGGGCCTGGCGGCGACCGACTCTCCCACGTCTTGAGACGCA
GTACCATTGGCGCTGGGGCGTTTCACTTCCGAGTTCGGGATGGGATCGGG
TGTTTGGGTCCCCGCAATGGCCACCAGGCCGGCAGAGCGCAAAAATTGTG
AACTGGTCTTAGTGCGCTTTGCGGGCCTGGCGGCGACCGACTCTCCCACG
TCTTGAGACGCAGTACCATTGGCGCTGGGGCGTTTCACTTCCGAGTTCGG
GATGGGATCGGGTGTTTGGGTCCCCGCAATGGCCACCAGGCCGGCAGAGC
GCAAAAATTGTGAACTGGTCTTAG
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