mRNA_L-elsbetiae_contig11873.1602.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11873.1602.1
Unique NamemRNA_L-elsbetiae_contig11873.1602.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig11873.1602.1 vs. uniprot
Match: A0A6H5K832_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K832_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 3.740e-11
Identity = 37/58 (63.79%), Postives = 44/58 (75.86%), Query Frame = 1 
Query:    1 MAERAVLRAGTSEKLTTFAAKAFETQRSKSSDLRASGTGNGHYTVGKQGSNYGNRVRL 174
            MAERA L    S++ T FAAK FE QR+KSS+L +S TGNG++TV K GSNYGNRV L
Sbjct:  298 MAERAELVNSASQRFTPFAAKEFEAQRAKSSNLHSSATGNGNFTVRKLGSNYGNRVGL 355
[Close]
BLAST of mRNA_L-elsbetiae_contig11873.1602.1 vs. uniprot
Match: A0A6H5KJU4_9PHAE (MULE domain-containing protein n=6 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJU4_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 3.940e-11
Identity = 37/58 (63.79%), Postives = 44/58 (75.86%), Query Frame = 1 
Query:    1 MAERAVLRAGTSEKLTTFAAKAFETQRSKSSDLRASGTGNGHYTVGKQGSNYGNRVRL 174
            MAERA L    S++ T FAAK FE QR+KSS+L +S TGNG++TV K GSNYGNRV L
Sbjct:  190 MAERAELVNSASQRFTPFAAKEFEAQRAKSSNLHSSATGNGNFTVRKLGSNYGNRVGL 247
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11873.1602.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K832_9PHAE3.740e-1163.79MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KJU4_9PHAE3.940e-1163.79MULE domain-containing protein n=6 Tax=Ectocarpus ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11873contigL-elsbetiae_contig11873:5029..5618 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size179
Cds size177
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815388.4525447-CDS-L-elsbetiae_contig11873:5028..51101622815388.4525447-CDS-L-elsbetiae_contig11873:5028..5110Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11873 5029..5110 -
1691682873.9348068-CDS-L-elsbetiae_contig11873:5028..51101691682873.9348068-CDS-L-elsbetiae_contig11873:5028..5110Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11873 5029..5110 -
1622815388.4647043-CDS-L-elsbetiae_contig11873:5523..56181622815388.4647043-CDS-L-elsbetiae_contig11873:5523..5618Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11873 5524..5618 -
1691682873.9428217-CDS-L-elsbetiae_contig11873:5523..56181691682873.9428217-CDS-L-elsbetiae_contig11873:5523..5618Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11873 5524..5618 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11873.1602.1prot_L-elsbetiae_contig11873.1602.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11873 5029..5618 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11873.1602.1

>prot_L-elsbetiae_contig11873.1602.1 ID=prot_L-elsbetiae_contig11873.1602.1|Name=mRNA_L-elsbetiae_contig11873.1602.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=59bp
MAERAVLRAGTSEKLTTFAAKAFETQRSKSSDLRASGTGNGHYTVGKQGS
NYGNRVRLV
back to top

mRNA from alignment at L-elsbetiae_contig11873:5029..5618-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11873.1602.1 ID=mRNA_L-elsbetiae_contig11873.1602.1|Name=mRNA_L-elsbetiae_contig11873.1602.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=590bp|location=Sequence derived from alignment at L-elsbetiae_contig11873:5029..5618- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCAGAGAGGGCCGTACTTCGGGCTGGTACCTCGGAGAAGCTTACGAC
TTTCGCCGCCAAGGCGTTCGAGACGCAGCGAAGCAAGTCCAGCGAGTAAG
TGTTACAACAAGCCGCCTACATTTTGGGAGGAAGCTCTCTTGCGTTTTGT
TCCAAAATGTATGTTGTTCAGTCATGTGTGTGAAAGGTTTGGCCGAGTTG
TTTGGAATGTCGGACTGTGCATACATGCGCATCGAGAAAATGCTCGACGT
TTGTGCGGGGGTTGTCTTTAGATCTTGTCTTTAGGTCTTCTCTTTATTCT
GCCCACAAGTGTTTTGTGTCTGTTACTTTGTGCATGTGCCTGGATACTTC
TTCATCACACGTGCCATATATTCTCCTGCGCATGTCTTTAATTTGGATCT
ACGGTTGATTGGTCTCTTTGAAATCGAACGCATTCATCACGGCGGCGTCT
CGTTCAAATACAACCACTTCGTTTTACTCTTTCCCCCCGCGTGTTGATGC
TGGGACAGTCTGCGCGCTAGTGGCACGGGGAACGGCCACTACACCGTCGG
AAAGCAAGGGAGCAACTACGGCAACCGAGTGCGCCTGGTA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig11873:5029..5618-

>mRNA_L-elsbetiae_contig11873.1602.1 ID=mRNA_L-elsbetiae_contig11873.1602.1|Name=mRNA_L-elsbetiae_contig11873.1602.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=354bp|location=Sequence derived from alignment at L-elsbetiae_contig11873:5029..5618- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCAGAGAGGGCCGTACTTCGGGCTGGTACCTCGGAGAAGCTTACGAC
TTTCGCCGCCAAGGCGTTCGAGACGCAGCGAAGCAAGTCCAGCGAATGGC
AGAGAGGGCCGTACTTCGGGCTGGTACCTCGGAGAAGCTTACGACTTTCG
CCGCCAAGGCGTTCGAGACGCAGCGAAGCAAGTCCAGCGATCTGCGCGCT
AGTGGCACGGGGAACGGCCACTACACCGTCGGAAAGCAAGGGAGCAACTA
CGGCAACCGAGTGCGCCTGGTATCTGCGCGCTAGTGGCACGGGGAACGGC
CACTACACCGTCGGAAAGCAAGGGAGCAACTACGGCAACCGAGTGCGCCT
GGTA
back to top