mRNA_L-elsbetiae_contig11864.1598.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11864.1598.1
Unique NamemRNA_L-elsbetiae_contig11864.1598.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11864.1598.1 vs. uniprot
Match: A0A6H5KML4_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KML4_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 1.230e-26
Identity = 80/121 (66.12%), Postives = 91/121 (75.21%), Query Frame = 3 
Query:  219 LAEVDEGSGKIPYRESRFSPRRGRRKREGGRGADXXXXXXXDAGAAHDGRESPACDRLFGLGDRAQRRRTDPPRDTPRTQRERQELEELKHCTFTPVMFTKDYCRGPRPRAGHEKGAPARR 581
            +AEVDE   +IPYRESRFSPRRGRRK+ GG   D  XXXXX  G +  GRESPAC+RLF LG R QR+R DPPRDTP++QRER ELEELK CTF+PV+ TK Y R PRPR     GAP+ R
Sbjct:  814 VAEVDEEGARIPYRESRFSPRRGRRKQGGG--YDGNXXXXXXGGES--GRESPACERLFELGHRQQRKRNDPPRDTPQSQRERDELEELKLCTFSPVLLTKAY-RRPRPRLA--TGAPSNR 927
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BLAST of mRNA_L-elsbetiae_contig11864.1598.1 vs. uniprot
Match: D7G310_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G310_ECTSI)

HSP 1 Score: 124 bits (310), Expect = 4.330e-26
Identity = 73/121 (60.33%), Postives = 84/121 (69.42%), Query Frame = 3 
Query:  219 LAEVDEGSGKIPYRESRFSPRRGRRKREGGRGADXXXXXXXDAGAAHDGRESPACDRLFGLGDRAQRRRTDPPRDTPRTQRERQELEELKHCTFTPVMFTKDYCRGPRPRAGHEKGAPARR 581
            +AEVDE   +IPYRESRFSPRR RRK+ GG   +         G    GRESPAC+RLF LG R QR+R D PRDTP++QRER ELEELK CTF+PV+FTK Y R PRPR     GAP+ R
Sbjct:  714 VAEVDEEGARIPYRESRFSPRRRRRKQGGGYDGNGNDGH----GGGESGRESPACERLFELGHRQQRKRNDSPRDTPQSQRERDELEELKLCTFSPVLFTKAY-RRPRPRLA--TGAPSNR 827
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11864.1598.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KML4_9PHAE1.230e-2666.12Reverse transcriptase domain-containing protein n=... [more]
D7G310_ECTSI4.330e-2660.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11864contigL-elsbetiae_contig11864:658..3585 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-09_004140.1
Exons3
Model size1627
Cds size522
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11864.1598.1prot_L-elsbetiae_contig11864.1598.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11864 744..2566 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815387.6719472-UTR-L-elsbetiae_contig11864:657..7431622815387.6719472-UTR-L-elsbetiae_contig11864:657..743Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11864 658..743 +
1691682873.5492845-UTR-L-elsbetiae_contig11864:657..7431691682873.5492845-UTR-L-elsbetiae_contig11864:657..743Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11864 658..743 +
1622815387.7283454-UTR-L-elsbetiae_contig11864:2566..35851622815387.7283454-UTR-L-elsbetiae_contig11864:2566..3585Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11864 2567..3585 +
1691682873.589375-UTR-L-elsbetiae_contig11864:2566..35851691682873.589375-UTR-L-elsbetiae_contig11864:2566..3585Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11864 2567..3585 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815387.6862764-CDS-L-elsbetiae_contig11864:743..10751622815387.6862764-CDS-L-elsbetiae_contig11864:743..1075Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11864 744..1075 +
1691682873.558327-CDS-L-elsbetiae_contig11864:743..10751691682873.558327-CDS-L-elsbetiae_contig11864:743..1075Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11864 744..1075 +
1622815387.6996107-CDS-L-elsbetiae_contig11864:1588..17651622815387.6996107-CDS-L-elsbetiae_contig11864:1588..1765Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11864 1589..1765 +
1691682873.56779-CDS-L-elsbetiae_contig11864:1588..17651691682873.56779-CDS-L-elsbetiae_contig11864:1588..1765Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11864 1589..1765 +
1622815387.714644-CDS-L-elsbetiae_contig11864:2553..25661622815387.714644-CDS-L-elsbetiae_contig11864:2553..2566Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11864 2554..2566 +
1691682873.5805337-CDS-L-elsbetiae_contig11864:2553..25661691682873.5805337-CDS-L-elsbetiae_contig11864:2553..2566Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11864 2554..2566 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11864.1598.1

>prot_L-elsbetiae_contig11864.1598.1 ID=prot_L-elsbetiae_contig11864.1598.1|Name=mRNA_L-elsbetiae_contig11864.1598.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=174bp
MTGGGGGGGGSGGGSGGGGGYVAARGGSASDGSSVRSDIGSPDILAEVDE
GSGKIPYRESRFSPRRGRRKREGGRGADDGDNGGDDAGAAHDGRESPACD
RLFGLGDRAQRRRTDPPRDTPRTQRERQELEELKHCTFTPVMFTKDYCRG
PRPRAGHEKGAPARRNDEDCTRG*
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mRNA from alignment at L-elsbetiae_contig11864:658..3585+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11864.1598.1 ID=mRNA_L-elsbetiae_contig11864.1598.1|Name=mRNA_L-elsbetiae_contig11864.1598.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2928bp|location=Sequence derived from alignment at L-elsbetiae_contig11864:658..3585+ (Laminarionema elsbetiae ELsaHSoW15)
GCCACGCTGTTTCCTATTCTGATGAATGCAGTGCCGAAAACAAAGTCACC
CGCCACTCACGGTTAAGGCCACCCGCCGCTGGTGCTATGACCGGTGGCGG
TGGCGGTGGCGGTGGCAGTGGCGGTGGCAGTGGCGGTGGCGGCGGATATG
TCGCTGCTAGGGGCGGCAGCGCGAGCGATGGGAGCAGCGTTAGGAGTGAC
ATTGGTAGTCCAGACATCTTAGCGGAAGTTGACGAGGGAAGCGGAAAGAT
TCCGTACCGGGAATCAAGGTTTTCCCCCAGGAGAGGGCGCCGCAAGAGAG
AGGGGGGCAGGGGGGCTGATGATGGCGATAACGGCGGAGACGATGCTGGC
GCTGCCCATGACGGCCGTGAATCGCCCGCGTGCGACAGGCTATTCGGGCT
AGGCGATCGAGCGCAGAGGTGAGTCCAGGTCGTCTCTGATAGCCGCACCA
CCGTATGTAGCGTCTCGACCACGCATGATATGCAACTGTGCCGACCAGGC
AGTGTTGCAATGACGGCGAATACATGCGGATAGAGCTTCATCCGTTCCGA
GGGCTGCCGTAGAAAGTGCGTAATGAGCGGGAGGGTGGTGCTGATGCAAC
CGTTCTCTTTGTTACATGTCTTCGATGTCTTTCGTTGCTCGCACGCATTC
CTCTCGAGATTGGACGCGCATGATTTCTGCTTGAATTAGTCATTTTTCGA
GGATGGGGAGAGCGGGTGGGGCTGGGCATCGGACACCGTGCGAGTAGGGC
AGGCTGAATGCTGGCAGAGGTTCGGTTCTTCGTCTTCGAGTTCGGTCCCG
GGATCAGCTGTACCCCGGCCGAGGGAAGCGCTATAACGCGAGACTTTGTT
TTATCCGCTACTGCTGTTGGTTGTTGTACATGCATAACCCAAAATATCGA
CATGTCGACTGCTGTTGCCGCCCACGACCAGGAGGAGGACCGACCCTCCC
CGCGACACGCCCAGGACGCAGCGTGAGAGGCAGGAGCTGGAAGAGCTCAA
GCATTGCACTTTCACCCCCGTCATGTTCACCAAGGACTACTGCCGGGGCC
CCCGTCCTAGAGCCGGGCACGAGAAGGGCGCCCCGGCACGGAGGAACGAC
GAAGACTGGTGCGTGCGCGTCGCCTTTGGTTTTTTTCTTAAGCCGATCCT
TGCCGATCCTGCCACTCTTTCGTGTACCGAGTTGCTCTCTGACGCAGGGC
TTGGAAGCTTTGGACAACCATGTCTGGTTCTGTTTCAGATTCGGGGGACT
CAACACATTAAGGTCGCCGGATAGATGGAAGATGTAAGCCAGACTCTGTG
AAAAACCGGGGTTGAAAACTGGCGCTTGGCCGGAGCCAAAGACCCCCTCT
CCTGTAAGCGAGACGCGATCAAGAGCCGCCATGGGGGAGAGAAGGGGGGA
TGAATGGGAGCATGGACGGGCTGCAGGTTTTTGTTCCTTCGGGCCGACTT
CACGGACAAAAGAGATACTTGCCGGTCCATGTCGCCCATAAATAATAGGC
TTCATCGTAACGAAAACCCTGAAGGCAGAATTTGCCGTCCTCGCTTGCTG
TGCAAGCAAACCGTCAACTGGGGACCGGGAAACCTCTGGTACAACTGCAG
GGTGTTCAGCAAAATCAACGTGCTCGAAAAAGGGTTTCCTCTTCTGGGGG
GGAAGGGGATTTTGAATCTGGTGAAAATGTCATGTCCTCACGCGGCGACG
AACGCTTTTCGCTTGTATGAACGCCCTCCTTCAGGATAGATCATGGCGAT
AAGGTTCTGTGTACACGCTCACCGCTGATGCCAACGATGACCATTCGATG
CTAATCCTCGTCGAAATCGACGTCAACAGAACAACGTTGCTTATCCGCCC
TCTTGCTTGCCGCCCTTCCCCCCGCTCCACTTTTTCGCCATGGCAGCACC
CGAGGTTGATGACTGTGGAGAAGGCTGTTGTTTCTCCTCTCCTGCGTGTA
TTTCTTTGTTCCCGCTCATCATCTCAGCACCCACCGCGGACCTTGTGCAT
GTTTATGGGAGTACCATGCTTGCGGTATGTGGGTCCAAGGTATGCTAATA
GGAAAAATTTTCTGCGTGGACTATGTAATGATTCGTCATCGAGAGAAACG
TGCAAGCTTCCACAGAGCGTGCAATAAGTTGGCTTTGACATATGTGAGCG
TTCTCGGGCGCGCGCGCGTGCATGTTGCTCGCTCACGAGGACGCGGACAC
GCAAAAGGAGTTACAGTAAGTCTTTATCTGCAGTCTTAAATCTATCGCAG
AGATCGGGCCGCACTCTTTGGAATGAGGGGATTATTAGCTTGTACTTGTA
GCGCGATGTGTGTTTGTTTTCTTCTTCACATTTGTTTCCAGTGCTCGATG
GGCTCCTTGTCACGAGGAAATCTTGCCAGAGTACTGAACCGTGGTCACAC
AGAAGGGTTCCTTTTCCCCAAGGCCCCCACTCCCCCCTTCTGCGGTGCTT
GCGTGAGATTTTTGTAGCGAAAAGGGTTCGGCCGTCCCTTTCCCTCGTCG
ACGGTAAGTCGAAGTTAGTGTACATAGCGCGAATTGGATTGAAGTAAAGT
GAAGGGGCTGAACATAGGTAAAGCAACCTCGGACAAACTTCGAGAAATAA
TCGTGCTTTCAAGTACGTACGGAGAACAGAGTGATGGTGTGTTATTTGTA
ACCACTGTTTGGCGTAGTTTACCGTAGATAACACAAGATACCAACCCCCC
CGGGCATATTTTCAAAGTTCGATTACTCCGTAACGAAAACGGTGCCAACA
CCAAACGACACGTTTTCGGACAGCTATCGACGAGATCTTTCCGACACCAC
CCTTCTCGGCACTTGACACTCTTCTTGCTGTGGAGCAATCGAGCTTCAAA
AATCCGTCCAGGGGGGGTGGTATCTTGTGTCAACTACGGTATTTACAAAA
CGACGAAAGGTGAATATGGCCAGTGCGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11864:658..3585+

>mRNA_L-elsbetiae_contig11864.1598.1 ID=mRNA_L-elsbetiae_contig11864.1598.1|Name=mRNA_L-elsbetiae_contig11864.1598.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1044bp|location=Sequence derived from alignment at L-elsbetiae_contig11864:658..3585+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACCGGTGGCGGTGGCGGTGGCGGTGGCAGTGGCGGTGGCAGTGGCGG
TGGCGGCGGATATGTCGCTGCTAGGGGCGGCAGCGCGAGCGATGGGAGCA
GCGTTAGGAGTGACATTGGTAGTCCAGACATCTTAGCGGAAGTTGACGAG
GGAAGCGGAAAGATTCCGTACCGGGAATCAAGGTTTTCCCCCAGGAGAGG
GCGCCGCAAGAGAGAGGGGGGCAGGGGGGCTGATGATGGCGATAACGGCG
GAGACGATGCTGGCGCTGCCCATGACGGCCGTGAATCGCCCGCGTGCGAC
AGGCTATTCGGGCTAGGCGATCGAGCGCAGAGATGACCGGTGGCGGTGGC
GGTGGCGGTGGCAGTGGCGGTGGCAGTGGCGGTGGCGGCGGATATGTCGC
TGCTAGGGGCGGCAGCGCGAGCGATGGGAGCAGCGTTAGGAGTGACATTG
GTAGTCCAGACATCTTAGCGGAAGTTGACGAGGGAAGCGGAAAGATTCCG
TACCGGGAATCAAGGTTTTCCCCCAGGAGAGGGCGCCGCAAGAGAGAGGG
GGGCAGGGGGGCTGATGATGGCGATAACGGCGGAGACGATGCTGGCGCTG
CCCATGACGGCCGTGAATCGCCCGCGTGCGACAGGCTATTCGGGCTAGGC
GATCGAGCGCAGAGGAGGAGGACCGACCCTCCCCGCGACACGCCCAGGAC
GCAGCGTGAGAGGCAGGAGCTGGAAGAGCTCAAGCATTGCACTTTCACCC
CCGTCATGTTCACCAAGGACTACTGCCGGGGCCCCCGTCCTAGAGCCGGG
CACGAGAAGGGCGCCCCGGCACGGAGGAACGACGAAGACTGGAGGAGGAC
CGACCCTCCCCGCGACACGCCCAGGACGCAGCGTGAGAGGCAGGAGCTGG
AAGAGCTCAAGCATTGCACTTTCACCCCCGTCATGTTCACCAAGGACTAC
TGCCGGGGCCCCCGTCCTAGAGCCGGGCACGAGAAGGGCGCCCCGGCACG
GAGGAACGACGAAGACTGCACCCGAGGTTGACACCCGAGGTTGA
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