mRNA_L-elsbetiae_contig11858.1594.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11858.1594.1
Unique NamemRNA_L-elsbetiae_contig11858.1594.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11858.1594.1 vs. uniprot
Match: D8LD92_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD92_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 8.720e-14
Identity = 31/36 (86.11%), Postives = 35/36 (97.22%), Query Frame = 1 
Query:    1 VRFSHQIRVILVASRLEMSSVKADVWWGEKDYCDFR 108
            VRFS+QIRVILVASRLE+SSVK D+WWGE+DYCDFR
Sbjct:    5 VRFSNQIRVILVASRLELSSVKTDIWWGERDYCDFR 40
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BLAST of mRNA_L-elsbetiae_contig11858.1594.1 vs. uniprot
Match: A0A6H5L2K1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2K1_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 3.600e-13
Identity = 29/36 (80.56%), Postives = 35/36 (97.22%), Query Frame = 1 
Query:    1 VRFSHQIRVILVASRLEMSSVKADVWWGEKDYCDFR 108
            VRFS+QIRV+LVASRLE+SS+K D+WWGE+DYCDFR
Sbjct:  257 VRFSNQIRVVLVASRLELSSMKTDIWWGERDYCDFR 292
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11858.1594.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LD92_ECTSI8.720e-1486.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L2K1_9PHAE3.600e-1380.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11858contigL-elsbetiae_contig11858:5636..5746 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size111
Cds size111
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815387.3536592-CDS-L-elsbetiae_contig11858:5635..57461622815387.3536592-CDS-L-elsbetiae_contig11858:5635..5746Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11858 5636..5746 +
1691682873.3744936-CDS-L-elsbetiae_contig11858:5635..57461691682873.3744936-CDS-L-elsbetiae_contig11858:5635..5746Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11858 5636..5746 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11858.1594.1prot_L-elsbetiae_contig11858.1594.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11858 5636..5746 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11858.1594.1

>prot_L-elsbetiae_contig11858.1594.1 ID=prot_L-elsbetiae_contig11858.1594.1|Name=mRNA_L-elsbetiae_contig11858.1594.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=37bp
VRFSHQIRVILVASRLEMSSVKADVWWGEKDYCDFR*
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mRNA from alignment at L-elsbetiae_contig11858:5636..5746+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11858.1594.1 ID=mRNA_L-elsbetiae_contig11858.1594.1|Name=mRNA_L-elsbetiae_contig11858.1594.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=111bp|location=Sequence derived from alignment at L-elsbetiae_contig11858:5636..5746+ (Laminarionema elsbetiae ELsaHSoW15)
GTGAGGTTTAGCCATCAGATCAGGGTGATCTTGGTGGCGTCCCGGCTGGA
GATGTCGTCCGTGAAGGCCGACGTTTGGTGGGGGGAGAAGGACTACTGCG
ATTTCAGGTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11858:5636..5746+

>mRNA_L-elsbetiae_contig11858.1594.1 ID=mRNA_L-elsbetiae_contig11858.1594.1|Name=mRNA_L-elsbetiae_contig11858.1594.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=222bp|location=Sequence derived from alignment at L-elsbetiae_contig11858:5636..5746+ (Laminarionema elsbetiae ELsaHSoW15)
GTGAGGTTTAGCCATCAGATCAGGGTGATCTTGGTGGCGTCCCGGCTGGA
GATGTCGTCCGTGAAGGCCGACGTTTGGTGGGGGGAGAAGGACTACTGCG
ATTTCAGGTAGGTGAGGTTTAGCCATCAGATCAGGGTGATCTTGGTGGCG
TCCCGGCTGGAGATGTCGTCCGTGAAGGCCGACGTTTGGTGGGGGGAGAA
GGACTACTGCGATTTCAGGTAG
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