mRNA_L-elsbetiae_contig11833.1583.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11833.1583.1
Unique NamemRNA_L-elsbetiae_contig11833.1583.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11833.1583.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11833contigL-elsbetiae_contig11833:145..2335 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons3
Model size325
Cds size306
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11833.1583.1prot_L-elsbetiae_contig11833.1583.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11833 145..2316 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815386.3024874-CDS-L-elsbetiae_contig11833:144..2251622815386.3024874-CDS-L-elsbetiae_contig11833:144..225Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11833 145..225 -
1691682872.81628-CDS-L-elsbetiae_contig11833:144..2251691682872.81628-CDS-L-elsbetiae_contig11833:144..225Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11833 145..225 -
1622815386.317593-CDS-L-elsbetiae_contig11833:1266..13801622815386.317593-CDS-L-elsbetiae_contig11833:1266..1380Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11833 1267..1380 -
1691682872.8241522-CDS-L-elsbetiae_contig11833:1266..13801691682872.8241522-CDS-L-elsbetiae_contig11833:1266..1380Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11833 1267..1380 -
1622815386.334876-CDS-L-elsbetiae_contig11833:2205..23161622815386.334876-CDS-L-elsbetiae_contig11833:2205..2316Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11833 2206..2316 -
1691682872.8319073-CDS-L-elsbetiae_contig11833:2205..23161691682872.8319073-CDS-L-elsbetiae_contig11833:2205..2316Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11833 2206..2316 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815386.3505406-UTR-L-elsbetiae_contig11833:2316..23351622815386.3505406-UTR-L-elsbetiae_contig11833:2316..2335Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11833 2317..2335 -
1691682872.8401134-UTR-L-elsbetiae_contig11833:2316..23351691682872.8401134-UTR-L-elsbetiae_contig11833:2316..2335Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11833 2317..2335 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11833.1583.1

>prot_L-elsbetiae_contig11833.1583.1 ID=prot_L-elsbetiae_contig11833.1583.1|Name=mRNA_L-elsbetiae_contig11833.1583.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=102bp
MPPRHFWAQAVGSPLARVLYLAPLVILRTVVLWLWEQTKNAIAAAEREAR
LEAEDRLAQVTAKSNEDAAQQRRIATSKIAAAQRQTVITRAELRASKGRE
YV
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mRNA from alignment at L-elsbetiae_contig11833:145..2335-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11833.1583.1 ID=mRNA_L-elsbetiae_contig11833.1583.1|Name=mRNA_L-elsbetiae_contig11833.1583.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2191bp|location=Sequence derived from alignment at L-elsbetiae_contig11833:145..2335- (Laminarionema elsbetiae ELsaHSoW15)
CTAGTGTCTGCCGACGGAAATGCCGCCGAGACATTTCTGGGCTCAGGCGG
TCGGGAGCCCTCTTGCCCGAGTGTTGTATCTGGCGCCTCTGGTCATACTT
CGCACCGTCGTGCTGTGGCTGTGGGAACAGGTAGGTGGCAGAGCTTTCGT
TCGAAGGGGGCTAAGTATCAGCGTGAACACTCATGCAGGGCGCTGGCGCC
TTTTGTCGGTGTTGGGGGGACCCTGGCAAAGTGAATCAGTCCATGATGCT
CTCAGCAGTCCCACGGCCAGCCTATACCACCTTTAGTTAAACCCTTGTCA
CGTGCAGCAGGACCTCTGTGCCAACCTGGTACGCCGTCGTTATCATATGT
AGCTTTGTGGCTGAAGGCGTGCTGTCAGACGGGCGAGAACTGATGCCATC
GGCATCAGACAATATCATGGGAATAGGCAAGTCCGCGGCTGGACCATGCA
CGTACCGGGCGTTTAGTAGAATCTTTCAGTGTACCACATTAAAAACCCGG
TTAGTTGGAAAGACCTACGATATAGTGACTGGTTTTGCAGCGGTGGGCGA
ACCGTCGTGCTTTGAACTTCCGGCCTCTCTCCTTCTCTCTGTCCTTTGCA
AATATTTCAAGTTTTGGCGGCCATTGGTAACTTTCTGGCGCTCGAGTTGT
CATCGATGTTCGCTACTTCAAGCAAATGAGTTAGAAAAAACTATATGGTA
CACAAAAAGCATTTGCGTTTGAAAGAAATTAAGGAGTACCGTGGGTACTG
TGTTGTTGCTTTGTGGCGTTTTAGCTGTTGAAGCGAAGGATCGCAGAAAA
GGTAACGCTTTCTTGCACAAGATATTCCACCCCCCGGCCTCAAGTTAGAG
AGGGCGGGATCCTATGGCAGCCGTCTAAGCTATACCAGGTACATGATACC
AGGCGGGAAGTGTACCAACAAACACGAACTCCCTCTTTTCCGCCCCTCCT
CTCAGACAAAGAATGCCATCGCCGCCGCCGAGAGGGAGGCCAGGCTGGAA
GCAGAAGATAGACTGGCTCAAGTGACGGCCAAATCCAATGAAGATGCGGC
CCAACAGAGGCGAATTGCGGTGAGTTGTTTCCTGCATACCGCCCACCACC
CCGAAACGCCTGTGCATTGTTGCTCGGACGTGCATTTTGATCGACGACTT
TCTTTCGTGTTCGTGCATACGTACATACACCGCATTCGACTTCTTTGCAA
AGTTGAGTTGAGCGAATGTGTCGGCTTGCTCCAAAACACACTTCTCTTCC
TCGACTGCTGGAGTCTCTTGCAGACCTATCACGGAGGGGTTCTACCTCGA
CAGGATCATTCTGGGCTCATATCGAAAGGGCTGTTGTTCATTGATTGAAT
AGAACAGGCATTCGATCGTTGGCCCTCGAGTTCCTACAATGTCGTGATTT
CGCTTTGCTTTCGCCGGCCCAACCTCCGTTTCAAGGAAGAATGGTCGAGG
GTGGGATGTACTCATTTTTGTGCTTAGGACAGTCATGCGACCTATTTAGC
ATTCGATACAAGGCGTTGGGTCCGGGGTGGGTAGGTTGAAACGCTTTTCA
CAAAAACCTCACGACGCCGGTGCCCCATGGCCTTCACGCACAATAGCGGG
AATACAGTAGTCGACGTGGAATTCGATGCACCGGGTTGGCAGTGCCGCAG
CAGCACGATTTTGTGCGGACCTATCTACCAAGCGGTTGTAGGCCTTTCCT
CGACAGAAGAAACGCGAAGAACTGAGAAAAAAGCGACGAAAGCCAGAGCG
CGCGGTTCTTGTGTTGGGAGCGTCTCCTCCAAAAGTACCGAAACCCTCCG
CATGCATGCTCACTTCGATGAGGTACTTCCCAAAACGTTTTTTTTGGGAG
TAAGTACCCCAGAGGGTGGCCTGTGTATTTTGCTGGGGGTTAGATGCGGT
CCTCACCTAATGTGCACCGGTTTGGCTCTCGCCGCGAAAGCTATTTGACA
AAGAAGCACGACGTCGATGTACCGCACATGCAACACGCTGTCCAACCTAT
ATGTATCTTGTAATATAAACCCTGCTGTTGCATGCATGTGTGTATTAACA
CTTGAGAGATCGTAGCTGCCCGAGCTAACCTGCTCGATGCATTCGCGGTT
TTTGTCCCAGACGAGTAAGATTGCTGCCGCCCAGCGCCAAACAGTGATAA
CGAGAGCGGAGCTGAGAGCCTCGAAAGGGCGCGAATACGTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11833:145..2335-

>mRNA_L-elsbetiae_contig11833.1583.1 ID=mRNA_L-elsbetiae_contig11833.1583.1|Name=mRNA_L-elsbetiae_contig11833.1583.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=612bp|location=Sequence derived from alignment at L-elsbetiae_contig11833:145..2335- (Laminarionema elsbetiae ELsaHSoW15)
ATGCCGCCGAGACATTTCTGGGCTCAGGCGGTCGGGAGCCCTCTTGCCCG
AGTGTTGTATCTGGCGCCTCTGGTCATACTTCGCACCGTCGTGCTGTGGC
TGTGGGAACAGATGCCGCCGAGACATTTCTGGGCTCAGGCGGTCGGGAGC
CCTCTTGCCCGAGTGTTGTATCTGGCGCCTCTGGTCATACTTCGCACCGT
CGTGCTGTGGCTGTGGGAACAGACAAAGAATGCCATCGCCGCCGCCGAGA
GGGAGGCCAGGCTGGAAGCAGAAGATAGACTGGCTCAAGTGACGGCCAAA
TCCAATGAAGATGCGGCCCAACAGAGGCGAATTGCGACAAAGAATGCCAT
CGCCGCCGCCGAGAGGGAGGCCAGGCTGGAAGCAGAAGATAGACTGGCTC
AAGTGACGGCCAAATCCAATGAAGATGCGGCCCAACAGAGGCGAATTGCG
ACGAGTAAGATTGCTGCCGCCCAGCGCCAAACAGTGATAACGAGAGCGGA
GCTGAGAGCCTCGAAAGGGCGCGAATACGTGACGAGTAAGATTGCTGCCG
CCCAGCGCCAAACAGTGATAACGAGAGCGGAGCTGAGAGCCTCGAAAGGG
CGCGAATACGTG
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