mRNA_L-elsbetiae_contig11824.1575.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11824.1575.1
Unique NamemRNA_L-elsbetiae_contig11824.1575.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11824.1575.1 vs. uniprot
Match: A0A6H5K919_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K919_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 3.070e-25
Identity = 63/115 (54.78%), Postives = 77/115 (66.96%), Query Frame = 1 
Query:    7 KVEWLLGCSVEQMSRLKALEVLGISSAMLEEEKARILGSLGVTAWRNPGISSVIENSQDNAGSC--LSRKRRNTTS--------EVPRNAASEVAELEDECLSQHLRIQQLELQV 321
            K EWLL  SVEQMSRLKALE LG+S AMLEE++ RILG+LG+  W NPG S V      +  +C  + RKR++  +        +  R    EVA+LEDECLSQHLRIQQLEL+V
Sbjct:    2 KAEWLLSLSVEQMSRLKALEQLGVSQAMLEEDRGRILGNLGIPRWGNPGDSMVDTEQDSSTSTCGPIFRKRQHIEATAKRWGLAQPTRQMEVEVAKLEDECLSQHLRIQQLELEV 116
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BLAST of mRNA_L-elsbetiae_contig11824.1575.1 vs. uniprot
Match: D7FYL6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYL6_ECTSI)

HSP 1 Score: 108 bits (269), Expect = 3.890e-24
Identity = 63/117 (53.85%), Postives = 77/117 (65.81%), Query Frame = 1 
Query:    7 KVEWLLGCSVEQMSRLKALEVLGISSAMLEEEKARILGSLGVTAWRNPGISSVIENSQDNAGSC--LSRKRRNTT--------SEVPRNAASEVAELEDECLSQHLRIQQLELQVAA 327
            K EWLL  S+EQMSRLKALE LG+S  MLEE++ RILG LG+  W NPG S V      +  +C  + RKR++          ++  R    EVA+LEDECLSQHLRIQQLEL+VAA
Sbjct:   45 KAEWLLSLSMEQMSRLKALEELGVSQDMLEEDRGRILGDLGIPRWGNPGDSMVDAERDSSTSACGPVFRKRQHIEGTAKRWGLAQPTRQKEVEVAKLEDECLSQHLRIQQLELEVAA 161
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BLAST of mRNA_L-elsbetiae_contig11824.1575.1 vs. uniprot
Match: D7FYM0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYM0_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 3.730e-12
Identity = 52/127 (40.94%), Postives = 75/127 (59.06%), Query Frame = 1 
Query:    4 AKVEWLLGCSVEQMSRLKALEVLGISSAMLEEEKARILGSLGVTAWRNPGISS--VIENSQDNAGSCLSRKRRNTTSEVPRNAASEVA-------ELEDECLSQHLRIQQLELQVAALTLSESCADN 357
            +K EWLLG +  QMS  KAL+VLGIS A++EEE++R LG LG +  R  G S     + ++D  G    +KRR++  E+      EVA       +LE+ C +Q  RIQ+LE Q+A L+   S +D+
Sbjct:  125 SKEEWLLGVTYAQMSFHKALQVLGISEAVVEEERSRRLGELG-SGGRGGGASECGAGQEAEDTCGRFFIKKRRSSIEELGTTLPGEVAFANSRVLQLEEVCHTQMTRIQELESQLAVLSARSSTSDS 250
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11824.1575.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K919_9PHAE3.070e-2554.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYL6_ECTSI3.890e-2453.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FYM0_ECTSI3.730e-1240.94Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11824contigL-elsbetiae_contig11824:1176..3127 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-26_002690.1
Exons3
Model size1348
Cds size333
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11824.1575.1prot_L-elsbetiae_contig11824.1575.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11824 1218..2154 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815385.5476992-UTR-L-elsbetiae_contig11824:1175..12171622815385.5476992-UTR-L-elsbetiae_contig11824:1175..1217Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11824 1176..1217 +
1691682872.4079387-UTR-L-elsbetiae_contig11824:1175..12171691682872.4079387-UTR-L-elsbetiae_contig11824:1175..1217Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11824 1176..1217 +
1622815385.6175244-UTR-L-elsbetiae_contig11824:2154..31271622815385.6175244-UTR-L-elsbetiae_contig11824:2154..3127Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11824 2155..3127 +
1691682872.4454162-UTR-L-elsbetiae_contig11824:2154..31271691682872.4454162-UTR-L-elsbetiae_contig11824:2154..3127Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11824 2155..3127 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815385.5665224-CDS-L-elsbetiae_contig11824:1217..14301622815385.5665224-CDS-L-elsbetiae_contig11824:1217..1430Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11824 1218..1430 +
1691682872.4181468-CDS-L-elsbetiae_contig11824:1217..14301691682872.4181468-CDS-L-elsbetiae_contig11824:1217..1430Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11824 1218..1430 +
1622815385.5808523-CDS-L-elsbetiae_contig11824:1643..17061622815385.5808523-CDS-L-elsbetiae_contig11824:1643..1706Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11824 1644..1706 +
1691682872.4266665-CDS-L-elsbetiae_contig11824:1643..17061691682872.4266665-CDS-L-elsbetiae_contig11824:1643..1706Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11824 1644..1706 +
1622815385.5988414-CDS-L-elsbetiae_contig11824:2097..21541622815385.5988414-CDS-L-elsbetiae_contig11824:2097..2154Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11824 2098..2154 +
1691682872.4352932-CDS-L-elsbetiae_contig11824:2097..21541691682872.4352932-CDS-L-elsbetiae_contig11824:2097..2154Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11824 2098..2154 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11824.1575.1

>prot_L-elsbetiae_contig11824.1575.1 ID=prot_L-elsbetiae_contig11824.1575.1|Name=mRNA_L-elsbetiae_contig11824.1575.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=111bp
MSRLKALEVLGISSAMLEEEKARILGSLGVTAWRNPGISSVIENSQDNAG
SCLSRKRRNTTSEVPRNAASEVAELEDECLSQHLRIQQLELQVAALTLSE
SCADNDKGHG*
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mRNA from alignment at L-elsbetiae_contig11824:1176..3127+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11824.1575.1 ID=mRNA_L-elsbetiae_contig11824.1575.1|Name=mRNA_L-elsbetiae_contig11824.1575.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1952bp|location=Sequence derived from alignment at L-elsbetiae_contig11824:1176..3127+ (Laminarionema elsbetiae ELsaHSoW15)
AGCGCGAAGGTCGAGTGGCTGCTGGGCTGCAGTGTCGAACAAATGTCGCG
ACTGAAGGCGTTGGAAGTGTTGGGAATCAGCTCAGCAATGCTGGAGGAAG
AAAAGGCCCGGATTCTTGGGAGCCTCGGGGTTACGGCTTGGAGAAATCCG
GGAATTTCCTCCGTGATCGAGAATTCTCAAGACAACGCTGGTTCTTGCCT
TTCCAGAAAGCGCCGAAACACTACATCCGAGGTACCCAGGAACGCTGCAT
CCGAGGTGAGCGGCCTCTTTGTTGCACGCTTACCCCCCATACCTGGCACA
GGAAGGACTCCCGAGTTGTCGCGTACAAAGAAGGCGTCGATCTGTGTTTT
ATTTGATGTCTACAAATGTCAGCAGTCTACGTCCAGTCTGCGAAAAAGTC
GTTCCAGAGGGACTGTTGTTGTGTTTTTTACGCTCACAATCCACTTCCAA
TTTCCCCCACACACACAGGTGGCCGAGCTCGAAGACGAATGCTTGTCTCA
ACACCTGAGGATTCAGCAACTCGAGCTACAGGTATTTATTTATTTCAAAT
TGATCGATGGCGTCTATCGAACCCCGTTTTCTTAGAGGTGGACTTCATCA
CAAATCTCAGTTTGTATCTGCGCCGAATGAAGTCTCAGTTTGTATCGCCC
GAAACAAACTCTTACCTAACCTTTTGCTGAGAAGTCGATCGCCCACATGA
ACACATTTTTCCGTATCGCCAATTCGCTCTTCTTTCCCATCTACGAGCGA
GATTAGAGACTAGCCATCCACGTTTCTTTTAAACGCGATACATGGAAACT
ATGTAGTCGAATGATGATCGAGTTGAAAGCAAGAGGCCAATTGTGTGCGC
TTGGAATTATCCACCGCCTGAAATTAACGTTTCCTTTTTTCTGTTTTTTT
TAACCTTGTCTTCTTTTTGCAGGTGGCGGCGCTTACACTTTCTGAGTCAT
GTGCGGACAACGACAAGGGTCACGGTTAAGGCCGGAGGCTGTTGTTGAGC
TTGACAGACTGGCCGTAGATCCCTTCCCGGTCCGTTGATCGCCCTGCGGT
ACTTTTCTTCAGTTACGCCAGCGCCGCTTTCTACATGGCGCCTGTGTCGT
CTGTTGCCGCTGTTTGTTCTGGTGATCGGCCTGTGCCACGTTTTTCCCAG
TTGTGGCCTGGAGTGATACGGTGCTGTTGTATGTAGCGACCTCCATCCAG
GATACATGCTGTGCATCGCCGATATTGTTTTGTGTTGTATAAATACTTCA
AATCTTTCAGGTTAACACAAGGATGTGTTGACAACAAAGCTCTGAGCGTG
ATATGTGCGGGGGGAGCCATTTTTGATCGGGTGTGTGTAGTTGATCACTG
CCGGAACTTGGTGTTTAGACTAGTTCTCGCTGATGTTTGTTGCTTTGTAC
CTCTCCGCTGCCGGAAGCTCGTTTGATGGCGGGAAGGAATGGGGTCGTTT
TCCCATCGAAAAGGTGTTTTTGCCTTCGATGTTCTTTCTCTTGTAGGCAA
ATTGTTTTTCACTCAGCACGGCGTGATCGAATAGGTGCTGTCGTGCGGAG
TACCTTTGTGGAGATGGCAGTCAGCCGTGGGTCTGTTCGTGGGTCTGTTC
ATAGCCGTCAGTGATGTAGCCACCCCATGTGTGTATCACACGAATTCTGC
TTGCTCGATGCGGCCACCATCAACTCCGAGCAAGAGACCAAGGCTGGGTT
CAATCAGTATCAGCAAGCAGACGTGCCTCCGTTCCAACTCAGGGCTTCAG
TTTTATCCCGGCACAAGAGGCGTGTAGATCCCGTCCTATCCTCTTCGCAG
GGCTGCCTCTATTGTAGCTCTGATTCCAGATACAAATAACGTGCGTTCAA
AGAGATATACGCTCGCTCTTTGCAGCTTTCCTCGAAAGCCAAGGGGAGAC
AAATTCGCTCTCTTTTTTTTTTCTCTTTCGTTTCACAATTATTATCAGTG
CT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11824:1176..3127+

>mRNA_L-elsbetiae_contig11824.1575.1 ID=mRNA_L-elsbetiae_contig11824.1575.1|Name=mRNA_L-elsbetiae_contig11824.1575.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=666bp|location=Sequence derived from alignment at L-elsbetiae_contig11824:1176..3127+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGCGACTGAAGGCGTTGGAAGTGTTGGGAATCAGCTCAGCAATGCT
GGAGGAAGAAAAGGCCCGGATTCTTGGGAGCCTCGGGGTTACGGCTTGGA
GAAATCCGGGAATTTCCTCCGTGATCGAGAATTCTCAAGACAACGCTGGT
TCTTGCCTTTCCAGAAAGCGCCGAAACACTACATCCGAGGTACCCAGGAA
CGCTGCATCCGAGATGTCGCGACTGAAGGCGTTGGAAGTGTTGGGAATCA
GCTCAGCAATGCTGGAGGAAGAAAAGGCCCGGATTCTTGGGAGCCTCGGG
GTTACGGCTTGGAGAAATCCGGGAATTTCCTCCGTGATCGAGAATTCTCA
AGACAACGCTGGTTCTTGCCTTTCCAGAAAGCGCCGAAACACTACATCCG
AGGTACCCAGGAACGCTGCATCCGAGGTGGCCGAGCTCGAAGACGAATGC
TTGTCTCAACACCTGAGGATTCAGCAACTCGAGCTACAGGTGGCCGAGCT
CGAAGACGAATGCTTGTCTCAACACCTGAGGATTCAGCAACTCGAGCTAC
AGGTGGCGGCGCTTACACTTTCTGAGTCATGTGCGGACAACGACAAGGGT
CACGGTTAAGTGGCGGCGCTTACACTTTCTGAGTCATGTGCGGACAACGA
CAAGGGTCACGGTTAA
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